Information report for AT3G47470
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0009535 — located in — chloroplast thylakoid membrane
- GO:0009534 — located in — chloroplast thylakoid
- GO:0009507 — located in — chloroplast
- GO:0009768 — involved in — photosynthesis, light harvesting in photosystem I
- GO:0009416 — involved in — response to light stimulus
- GO:0009941 — located in — chloroplast envelope
- GO:0005829 — located in — cytosol
- GO:0003729 — enables — mRNA binding
- GO:0009645 — involved in — response to low light intensity stimulus
- GO:0009409 — involved in — response to cold
- GO:0009644 — involved in — response to high light intensity
- GO:0016168 — enables — chlorophyll binding
- GO:0009579 — located in — thylakoid
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , guard cell
Literature and News
- Expression of the Arabidopsis Gene Akr Coincides with Chloroplast Development. DOI: 10.1104/pp.106.4.1261 ; PMID: 12232406
- Light stress-induced one-helix protein of the chlorophyll a/b-binding family associated with photosystem I. DOI: 10.1104/pp.102.019281 ; PMID: 12805611
- Absence of the Lhcb1 and Lhcb2 proteins of the light-harvesting complex of effects on photosynthesis, grana stacking and fitness. DOI: 10.1046/j.1365-313x.2003.01811.x ; PMID: 12887586
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Excitation energy trapping in photosystem I complexes depleted in Lhca1 and Lhca4. DOI: 10.1016/j.febslet.2005.06.091 ; PMID: 16098971
- Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. DOI: 10.1104/pp.105.076083 ; PMID: 16461379
- Singlet and triplet state transitions of carotenoids in the antenna complexes of higher-plant photosystem I. DOI: 10.1021/bi602531k ; PMID: 17326666
- Impaired photosystem I oxidation induces STN7-dependent phosphorylation of the light-harvesting complex I protein Lhca4 in Arabidopsis thaliana. DOI: 10.1007/s00425-007-0650-8 ; PMID: 17968587
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- The role of Lhca complexes in the supramolecular organization of higher plant photosystem I. DOI: 10.1074/jbc.M808395200 ; PMID: 19139095
- Effects of chlorophyllide a oxygenase overexpression on light acclimation in Arabidopsis thaliana. DOI: 10.1007/s11120-005-6807-z ; PMID: 16170635
- Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis. DOI: 10.1105/tpc.109.066845 ; PMID: 20008096
- Karrikins enhance light responses during germination and seedling development in Arabidopsis thaliana. DOI: 10.1073/pnas.0911635107 ; PMID: 20351290
- The light-harvesting complexes of higher-plant Photosystem I: Lhca1/4 and Lhca2/3 form two red-emitting heterodimers. DOI: 10.1042/BJ20101538 ; PMID: 21083539
- The role of the individual Lhcas in photosystem I excitation energy trapping. DOI: 10.1016/j.bpj.2011.06.045 ; PMID: 21806943
- Selective Interaction Between Chloroplast β-ATPase and TGB1L88 Retards Severe Symptoms Caused by Alternanthera mosaic virus Infection. DOI: 10.5423/PPJ.OA.09.2013.0097 ; PMID: 25288986
- An intact light harvesting complex I antenna system is required for complete state transitions in Arabidopsis. DOI: 10.1038/nplants.2015.176 ; PMID: 27251716
- LHCII can substitute for LHCI as an antenna for photosystem I but with reduced light-harvesting capacity. DOI: 10.1038/nplants.2016.131 ; PMID: 27564313
- Specific substitutions of light-harvesting complex I proteins associated with photosystem I are required for supercomplex formation with chloroplast NADH dehydrogenase-like complex. DOI: 10.1111/tpj.13846 ; PMID: 29385648
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Assembly of LHCA5 into PSI blue shifts the far-red fluorescence emission in higher plants. DOI: 10.1016/j.bbrc.2022.04.102 ; PMID: 35512460
- Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. DOI: 10.1074/mcp.M300030-MCP200 ; PMID: 12766230
- In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. DOI: 10.1105/tpc.017814 ; PMID: 14729914
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. DOI: 10.1104/pp.105.076083 ; PMID: 16461379
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
Gene Resources
- UniProt: A0A178VEE6
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A178VEE6
- EnsemblPlants: AT3G47470.1
- Gramene: AT3G47470.1
- KEGG: ath:AT3G47470
- Orthologous matrix: RPCINSK
- ExpressionAtlas: AT3G47470
- InterPro: IPR001344, IPR022796
- PANTHER: PTHR21649
- SUPFAM: SSF103511
- Gene3D: 1.10.3460.10
- OrthoDB: A0A178VEE6
- SWISS-MODEL: A0A178VEE6
Homologs
- Brachypodium distachyon Bradi3g42627.5.p, Bradi3g42627.4.p, Bradi3g42627.3.p
- Glycine max GmLHCa2
- Oryza sativa Lhca4;DYE1, CP29;OsLhcb4, OsCAB1R, CAB2R;OsLhcp, LHCB;LHCPII, CP24, ASCAB9-A;CP26
Sequences
cDNA Sequence
- >AT3G47470.1
AACCGATAAGCCTGTATCTCCTCTCAAACCAATCTCCTCCGTCAAATCAACCACGTCATCTAATCCAACGGTAGATACTCAGTCATCAAACCACAGCCACAAAACTCGTTTCAAGAAACGAATAAACTTACAAAATCCCCTCCAAGTCTTATTTCTTCACAACCATCTCTGAACTCATCTTTCAATCTCTCTTGATTCCAATCCATTCTTCTTCAAGTGCCGGGTTCTCGGGTCGGATCTTCTAAGTCTAGCTAGGGATAATGGCTACTGTCACTACTCATGCCTCGGCCTCGATTTTCCGACCTTGTACTTCAAAGCCAAGATTCCTCACCGGTTCTTCCGGTAGGTTGAACCGCGACTTGTCGTTTACATCGATCGGTTCATCGGCCAAAACGTCGTCGTTCAAGGTTGAAGCTAAGAAAGGAGAATGGTTGCCCGGTTTGGCATCGCCTGATTATCTCACCGGCAGTCTTGCCGGTGACAATGGGTTTGACCCGTTGGGTCTAGCAGAGGATCCAGAGAACTTGAAATGGTTCGTCCAGGCAGAGCTGGTCAACGGACGATGGGCTATGCTCGGTGTCGCTGGGATGCTTTTGCCGGAAGTTTTCACCAAGATCGGAATCATAAATGTTCCTGAGTGGTACGATGCTGGGAAAGAGCAGTATTTTGCATCGTCGTCGACATTGTTCGTGATCGAGTTCATATTGTTTCATTACGTTGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCCTATCTTTAAGCAATACAGCTTACCTAAGGGTGAAGTTGGTTACCCTGGTGGAATCTTTAACCCGCTTAACTTTGCTCCTACGCAAGAGGCCAAGGAGAAAGAGCTAGCAAACGGGAGGTTGGCGATGTTGGCATTCTTAGGGTTTGTGGTTCAACACAATGTGACTGGAAAAGGACCATTTGAGAATCTGTTGCAGCACTTGTCTGACCCATGGCACAACACTATTGTCCAAACCTTCAACTAAAGAGTGAAGACAGACTTATGATCTCATACCTATCTATCTTCCATCACTTTCATGTCTGTCTGTGAGTGTGTTTCATCTTAGAGTTCTTGGTTTTTGAGCTTGAATTATTGTTGAACCGTTGTAGCTCCATGAACAAATTTGGAATCTTCAATGTACAGAGGAACTAAGTTAATCAACATTGTTGTACTCTTTAATATCTATTATTCATGTGGCAACAGTTATATATAAGCACACCATAACTTAGATTCACAATCTCTTAATACATTTGCAACAAAAAAA
CDS Sequence
- >AT3G47470.1
ATGGCTACTGTCACTACTCATGCCTCGGCCTCGATTTTCCGACCTTGTACTTCAAAGCCAAGATTCCTCACCGGTTCTTCCGGTAGGTTGAACCGCGACTTGTCGTTTACATCGATCGGTTCATCGGCCAAAACGTCGTCGTTCAAGGTTGAAGCTAAGAAAGGAGAATGGTTGCCCGGTTTGGCATCGCCTGATTATCTCACCGGCAGTCTTGCCGGTGACAATGGGTTTGACCCGTTGGGTCTAGCAGAGGATCCAGAGAACTTGAAATGGTTCGTCCAGGCAGAGCTGGTCAACGGACGATGGGCTATGCTCGGTGTCGCTGGGATGCTTTTGCCGGAAGTTTTCACCAAGATCGGAATCATAAATGTTCCTGAGTGGTACGATGCTGGGAAAGAGCAGTATTTTGCATCGTCGTCGACATTGTTCGTGATCGAGTTCATATTGTTTCATTACGTTGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCCTATCTTTAAGCAATACAGCTTACCTAAGGGTGAAGTTGGTTACCCTGGTGGAATCTTTAACCCGCTTAACTTTGCTCCTACGCAAGAGGCCAAGGAGAAAGAGCTAGCAAACGGGAGGTTGGCGATGTTGGCATTCTTAGGGTTTGTGGTTCAACACAATGTGACTGGAAAAGGACCATTTGAGAATCTGTTGCAGCACTTGTCTGACCCATGGCACAACACTATTGTCCAAACCTTCAACTAA
Protein Sequence
- >AT3G47470.1
MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN