Gene Details:
- Gene ID: AT3G47180
- Gene Symbol: CTL16
- Gene Name:
- Description: RING/U-box superfamily protein;(source:Araport11)
- TAIR Accession: locus:2075641
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
Gene Ontology:
- GO:0005634 — located in — nucleus
- GO:0004842 — enables — ubiquitin-protein transferase activity
- GO:0031624 — enables — ubiquitin conjugating enzyme binding
- GO:0046621 — involved in — negative regulation of organ growth
Function-related keywords:
Literature:
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Plant retromer, localized to the prevacuolar compartment and microvesicles in Arabidopsis, may interact with vacuolar sorting receptors. DOI: 10.1105/tpc.105.035907 ; PMID: 16582012
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Sequences:
cDNA Sequence
- >AT3G47180.1
TGCTTAAGTAACCTCTCTGACATGAAAGCCATTTTCATATAAAATTCCGGAGCTCGGCTTCCTAACCATAACACAATCTACTTATTCTTCTCTAATGGATAACCAAGAAGAAGAGCCTAAGCAACCTCCAAACAAACTTCCCGATCTAGCCCTCTTTGAGCAAGCAAATTCTGAAGTTGCTCTTGCTGCCTCCCAAGCTAATTCCCATTTTGCCCATGCTATGCATGATTCGTCTCCCTCAATGATTTCAATGATAGAAAGTGACGAAGAATCTGAAGATGAAGAAGAAATCAATGAGAACTACTACGAGTATTTCGATAGCAATGGATTTGGAGTAGATGAAGACGAAATCAATGAGTTTCTTGAAGATCAAGAAAGCAATTCCAACCTTGAGGAGGAGGATGATTTCTTGGAGGAAGAAGATGAGATTGATCCCGACCAATTGTCTTACGAGGAACTGATTGCGCTTGGAGATTTCATCGGAGTCGAAAACCGTGGGCTAACTCCTATTGAAATCTCTACGTGTTTGAACGCATCTACATACGTATTTTCACATAACAAAAACGAGATTGATCGTTGTGTAGTTTGCCAAATGGAGTTTGAAGAAAGAGAATCTTTGGTCGTTCTCCGACCTTGTGACCATCCATACCACTCTGAGTGTATAACCAAATGGCTTGAGACAAAGAAGATTTGTCCCATTTGTTGTTCTGAACCATCTGTCAGTTGAAATGTAATGGTATAAATATTTTAATTATCATTAATTAGTTTATTAACTTTTTTGGGGGATTAAACCTACGACCTCTAGGTTTTGCATGGG
CDS Sequence
- >AT3G47180.1
ATGGATAACCAAGAAGAAGAGCCTAAGCAACCTCCAAACAAACTTCCCGATCTAGCCCTCTTTGAGCAAGCAAATTCTGAAGTTGCTCTTGCTGCCTCCCAAGCTAATTCCCATTTTGCCCATGCTATGCATGATTCGTCTCCCTCAATGATTTCAATGATAGAAAGTGACGAAGAATCTGAAGATGAAGAAGAAATCAATGAGAACTACTACGAGTATTTCGATAGCAATGGATTTGGAGTAGATGAAGACGAAATCAATGAGTTTCTTGAAGATCAAGAAAGCAATTCCAACCTTGAGGAGGAGGATGATTTCTTGGAGGAAGAAGATGAGATTGATCCCGACCAATTGTCTTACGAGGAACTGATTGCGCTTGGAGATTTCATCGGAGTCGAAAACCGTGGGCTAACTCCTATTGAAATCTCTACGTGTTTGAACGCATCTACATACGTATTTTCACATAACAAAAACGAGATTGATCGTTGTGTAGTTTGCCAAATGGAGTTTGAAGAAAGAGAATCTTTGGTCGTTCTCCGACCTTGTGACCATCCATACCACTCTGAGTGTATAACCAAATGGCTTGAGACAAAGAAGATTTGTCCCATTTGTTGTTCTGAACCATCTGTCAGTTGA
Protein Sequence
- >AT3G47180.1
MDNQEEEPKQPPNKLPDLALFEQANSEVALAASQANSHFAHAMHDSSPSMISMIESDEESEDEEEINENYYEYFDSNGFGVDEDEINEFLEDQESNSNLEEEDDFLEEEDEIDPDQLSYEELIALGDFIGVENRGLTPIEISTCLNASTYVFSHNKNEIDRCVVCQMEFEERESLVVLRPCDHPYHSECITKWLETKKICPICCSEPSVS