Information report for AT3G46580
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- GO:0008327 — enables — methyl-CpG binding
- GO:0010370 — located in — perinucleolar chromocenter
- GO:0005634 — located in — nucleus
- GO:0006996 — acts upstream of or within — organelle organization
- GO:0043621 — enables — protein self-association
- GO:0051052 — acts upstream of or within — regulation of DNA metabolic process
- GO:0010605 — acts upstream of or within — negative regulation of macromolecule metabolic process
- GO:0019219 — acts upstream of or within — regulation of nucleobase-containing compound metabolic process
- GO:0005515 — enables — protein binding
- GO:0000792 — part of — heterochromatin
- GO:0019899 — enables — enzyme binding
Functional Keywords
Literature and News
- Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins. DOI: 10.1046/j.1365-313x.2003.01756.x ; PMID: 12787239
- Ten members of the Arabidopsis gene family encoding methyl-CpG-binding domain proteins are transcriptionally active and at least one, AtMBD11, is crucial for normal development. DOI: 10.1093/nar/gkg735 ; PMID: 12954765
- Methylated DNA-binding proteins from Arabidopsis. DOI: 10.1104/pp.103.026708 ; PMID: 14605234
- Evolutionary divergence of monocot and dicot methyl-CpG-binding domain proteins. DOI: 10.1104/pp.105.060566 ; PMID: 15888682
- Methyl-CpG-binding domain proteins in plants: interpreters of DNA methylation. DOI: 10.1016/j.tplants.2006.12.004 ; PMID: 17208509
- Genetic analysis implicates a molecular chaperone complex in regulating epigenetic silencing of methylated genomic regions. DOI: 10.1111/jipb.13155 ; PMID: 34289245
- Single-nucleus RNA-seq reveals that MBD5, MBD6, and SILENZIO maintain silencing in the vegetative cell of developing pollen. DOI: 10.1016/j.celrep.2022.111699 ; PMID: 36417865
Gene Resources
- UniProt: A0A654FEP7
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A654FEP7
- EnsemblPlants: AT3G46580.1
- Gramene: AT3G46580.1
- KEGG: ath:AT3G46580
- Orthologous matrix: TVDKFYY
- ExpressionAtlas: AT3G46580
- InterPro: IPR001739, IPR016177
- PANTHER: PTHR12396, PTHR12396:SF59
- SUPFAM: SSF54171
- PROSITE: PS50982
- Gene3D: 3.30.890.10
- OrthoDB: A0A654FEP7
- SWISS-MODEL: A0A654FEP7
- Conserved Domain Database: cd01396
Homologs
- Brassica napus GSBRNA2T00141076001
- Brassica oleracea Bo3g018180
- Capsicum annuum T459_34637
Sequences
cDNA Sequence
- >AT3G46580.1
CAAACTTTAAAACAGAAACAAAACTTCTAACTTACAAATTGTACTTCTGTCTTTTACTCTGTCTGATTCAGTCAAAAAGAAAGGAATATTAAAATCTCTCAATTTTATATACACTCACTCAATCATACCTTTCTCTGGAGACCTCCACAGGGTTTGTTTCCGGAAATGTCGAACGGCACGGATCAGGCTCAACCACCACCGGAGAACCCGGCTACTCCGGTGGATTCGAAGTCACGGAAACGTGCGACGCCAGGGGATGATAATTGGCTTCCTCCTGATTGGAGAACCGAAATTAGGGTTCGAACCTCTGGCACTAAAGCTGGTACTGTTGATAAGTTCTACTACGAACCGATTACGGGTCGTAAGTTCCGGTCCAAGAACGAGGTTTTGTACTATTTGGAACACGGGACGCCTAAAAAGAAGTCCGTCAAGACAGCGGAAAACGGAGACTCACATTCCGAACATTCTGAAGGTAGAGGAAGCGCTAGGCGGCAGACAAAATCCAACAAAAAGGTTACTGAGCCACCGCCAAAGCCGTTGAACTTCGATTTTCTGAATGTGCCGGAGAAGGTTACTTGGACTGGGATAAACGGTTCAGAAGAAGCTTGGTTGCCTTTCATTGGGGACTACAAGATTCAAGAATCTGTCAGCCAAGATTGGGACAGAGTATTCACTCTTGTCACCTCCCAAAACGCTGGAAAAACGATGTTCTAGAAGATTGCTGCAGAAACTCACAAATTGTAATAACACGCGCTGCTAGATTATCATATCTACTTAGTATTTACTGATCGTTGGTTGGAATGCAGGTTAATTTTTTAGTAGTGATAGTTTTAGTAACACTTTGATTTGAGTTGTAATGTACTTTCTTAACATTTTCTTAGATAATTTGAAGGCAATGTATGTCTATATTATTGCCTTTGAGAGAATCCGATAGTAACAAAGTTATGAAATCTAAAGTTCGATGTGCGGTACTTCTCTGCTCA
CDS Sequence
- >AT3G46580.1
ATGTCGAACGGCACGGATCAGGCTCAACCACCACCGGAGAACCCGGCTACTCCGGTGGATTCGAAGTCACGGAAACGTGCGACGCCAGGGGATGATAATTGGCTTCCTCCTGATTGGAGAACCGAAATTAGGGTTCGAACCTCTGGCACTAAAGCTGGTACTGTTGATAAGTTCTACTACGAACCGATTACGGGTCGTAAGTTCCGGTCCAAGAACGAGGTTTTGTACTATTTGGAACACGGGACGCCTAAAAAGAAGTCCGTCAAGACAGCGGAAAACGGAGACTCACATTCCGAACATTCTGAAGGTAGAGGAAGCGCTAGGCGGCAGACAAAATCCAACAAAAAGGTTACTGAGCCACCGCCAAAGCCGTTGAACTTCGATTTTCTGAATGTGCCGGAGAAGGTTACTTGGACTGGGATAAACGGTTCAGAAGAAGCTTGGTTGCCTTTCATTGGGGACTACAAGATTCAAGAATCTGTCAGCCAAGATTGGGACAGAGTATTCACTCTTGTCACCTCCCAAAACGCTGGAAAAACGATGTTCTAG
Protein Sequence
- >AT3G46580.1
MSNGTDQAQPPPENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVTSQNAGKTMF