Gene Details:
- Gene ID: AT3G46560
- Gene Symbol: AtTIM9, emb2474, TIM9
- Gene Name: embryo defective 2474, TRANSLOCASE OF THE INNER MEMBRANE 9
- Description: Tim10/DDP family zinc finger protein;(source:Araport11)
- TAIR Accession: locus:2075195
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Gene Ontology:
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0005829 — located in — cytosol
- GO:0005758 — located in — mitochondrial intermembrane space
- GO:0007005 — acts upstream of or within — mitochondrion organization
- GO:0005515 — enables — protein binding
Function-related keywords:
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen
Literature:
- A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. DOI: 10.1104/pp.103.033910 ; PMID: 14730085
- Identification of genes required for embryo development in Arabidopsis. DOI: 10.1104/pp.104.045179 ; PMID: 15266054
- Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis. DOI: 10.1111/j.1365-313X.2005.02355.x ; PMID: 15773857
- The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. DOI: 10.1094/MPMI-19-0665 ; PMID: 16776300
- Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. DOI: 10.1186/1471-2164-9-113 ; PMID: 18315867
- OEP61 is a chaperone receptor at the plastid outer envelope. DOI: 10.1042/BJ20110448 ; PMID: 21612577
- TRANSLOCASE OF THE INNER MEMBRANE9 and 10 are essential for maintaining mitochondrial function during early embryo cell and endosperm free nucleus divisions in Arabidopsis. DOI: 10.1104/pp.114.242560 ; PMID: 25104724
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- tRNA-Dependent Import of a Transit Sequence-Less Aminoacyl-tRNA Synthetase (LeuRS2) into the Mitochondria of Arabidopsis. DOI: 10.3390/ijms22083808 ; PMID: 33916944
- A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. DOI: 10.1104/pp.103.033910 ; PMID: 14730085
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Sequences:
cDNA Sequence
- >AT3G46560.1
GGGCCTAATTAGTAAAACATTAGGCTTTAATCAAGTCTAAGTAATAAAGCCCACCAGGCCCAATAAAGAAAATCGCTAGGGTTTAAGTCTTAAGCACAGAACAAGGAGGCGATGAAGAATTGAATCTGTAGTCGAAAGAAAAGAGTTGGGAAAAAAATGGACGCAAGCATGATGGCTGGACTTGATGGTCTTCCTGAAGAAGACAAAGCCAAAATGGCCTCCATGATCGATCAGCTTCAGCTCCGTGATAGTTTGAGGATGTACAATTCATTGGTGGAGAGGTGTTTCGTGGACTGTGTTGATAGCTTCACACGCAAATCTCTGCAGAAACAAGAGGAGACTTGTGTGATGCGTTGCGCTGAGAAGTTCCTTAAGCATACGATGCGTGTTGGTATGCGGTTTGCTGAGCTCAATCAGAACGCACCAACCCAAGACTGATATAGTCTGCTTTTTCTGTTTGGTTTTTTCGTACGGTTTACGAGTCCGAAACCAGAATAAACCGGTTGTTAGTTGTTCAGGTTACTACTCCGATACTGTTTTTTGAACATCTTGTACTGTGAAATTATTTTGACTGTATCCAGTTCTGATATTGATATTGACTTGTATTTCAATGGAGTCTAGAGAATATCATATCATATCAGTATTACATCGACCAGTTCCAAATTTTCAATGTGTAATATTGCTTAACATCTTGAAACTTTGTTACAAAAGAAATCGAG
CDS Sequence
- >AT3G46560.1
ATGGACGCAAGCATGATGGCTGGACTTGATGGTCTTCCTGAAGAAGACAAAGCCAAAATGGCCTCCATGATCGATCAGCTTCAGCTCCGTGATAGTTTGAGGATGTACAATTCATTGGTGGAGAGGTGTTTCGTGGACTGTGTTGATAGCTTCACACGCAAATCTCTGCAGAAACAAGAGGAGACTTGTGTGATGCGTTGCGCTGAGAAGTTCCTTAAGCATACGATGCGTGTTGGTATGCGGTTTGCTGAGCTCAATCAGAACGCACCAACCCAAGACTGA
Protein Sequence
- >AT3G46560.1
MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQEETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD