Information report for AT3G46550
Gene Details
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Functional Descriptions
- CS2106720 — Seed mucilage defects.
- CS24931 — Hypersensitive to NaCl, KCl, and LiCl but not to CsCl stress; in response to salt stress, the root tips of plants swell and root elongation is arrested, root tips have abnormal cell expansion, thinner walls, and reduced middle lamella; under normal growth conditions, the rate of growth and development of plants is similar to that of wild type plants but with shorter siliques and fewer seeds per silique; glabra phenotype: lacks trichomes on leaves and stems.
- CS24931 — Mutants grown in the presence of 100 mM NaCl display a dramatic short root phenotype and radial swelling of the root elongation zone.ABA at between 0.5 and 2 microM partially and at 5 microM fully suppresses the NaCl-induced phenotype and partially suppresses in the absence of NaCl. Roots are also short and more swollen in media containing 1% sucrose.
- CS72786 — poorly staining seed mucilage, equivalent to sos5-1 and sos5-2
- CS72787 — poorly staining seed mucilage, equivalent to sos5-1 and sos5-2
- sos5-1/abi4-1 — Abnormal root growth on NaCl free media.
- sos5-1/cpl1-1 — In the presence and absence of 100 mM NaCl, root morphology in double mutants is comparable with that of the wild type.
- sos5-1/sad1-1 — In the presence and absence of 100 mM NaCl, root morphology in double mutants is comparable to wild type.
Functional Keywords
Literature and News
- Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. DOI: 10.1104/pp.010884 ; PMID: 12068095
- Using genomic resources to guide research directions. The arabinogalactan protein gene family as a test case. DOI: 10.1104/pp.003459 ; PMID: 12177459
- Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. DOI: 10.1104/pp.103.021170 ; PMID: 12805588
- The fasciclin-like arabinogalactan proteins of Arabidopsis. A multigene family of putative cell adhesion molecules. DOI: 10.1104/pp.103.031237 ; PMID: 14645732
- AtFLA11, a fasciclin-like arabinogalactan-protein, specifically localized in sclerenchyma cells. DOI: 10.1271/bbb.69.1963 ; PMID: 16244449
- Two leucine-rich repeat receptor kinases mediate signaling, linking cell wall biosynthesis and ACC synthase in Arabidopsis. DOI: 10.1105/tpc.108.063354 ; PMID: 19017745
- and salt-stress signaling in plants: shedding light on SOS pathway. DOI: 10.1016/j.abb.2008.01.010 ; PMID: 18241665
- Fasciclin-like arabinogalactan proteins: specialization for stem biomechanics and cell wall architecture in Arabidopsis and Eucalyptus. DOI: 10.1111/j.1365-313X.2010.04181.x ; PMID: 20202165
- A fasciclin-like arabinogalactan-protein (FLA) mutant of Arabidopsis thaliana, fla1, shows defects in shoot regeneration. DOI: 10.1371/journal.pone.0025154 ; PMID: 21966441
- The FEI2-SOS5 pathway and CELLULOSE SYNTHASE 5 are required for cellulose biosynthesis in the Arabidopsis seed coat and affect pectin mucilage structure. DOI: 10.4161/psb.18819 ; PMID: 22353871
- The Arabidopsis thaliana FASCICLIN LIKE ARABINOGALACTAN PROTEIN 4 gene acts synergistically with abscisic acid signalling to control root growth. DOI: 10.1093/aob/mcu010 ; PMID: 24603604
- Starting to gel: how Arabidopsis seed coat epidermal cells produce specialized secondary cell walls. DOI: 10.3390/ijms16023452 ; PMID: 25658798
- Two Hydroxyproline Galactosyltransferases, GALT5 and GALT2, Function in Arabinogalactan-Protein Glycosylation, Growth and Development in Arabidopsis. DOI: 10.1371/journal.pone.0125624 ; PMID: 25974423
- Highly Branched Xylan Made by IRREGULAR XYLEM14 and MUCILAGE-RELATED21 Links Mucilage to Arabidopsis Seeds. DOI: 10.1104/pp.15.01441 ; PMID: 26482889
- Glycosylation of a Fasciclin-Like Arabinogalactan-Protein (SOS5) Mediates Root Growth and Seed Mucilage Adherence via a Cell Wall Receptor-Like Kinase (FEI1/FEI2) Pathway in Arabidopsis. DOI: 10.1371/journal.pone.0145092 ; PMID: 26731606
- Dissecting Seed Mucilage Adherence Mediated by FEI2 and SOS5. DOI: 10.3389/fpls.2016.01073 ; PMID: 27524986
- A speculation on the tandem fasciclin 1 repeat of FLA4 proteins in angiosperms. DOI: 10.1080/15592324.2018.1507403 ; PMID: 30148420
- Seed hemicelluloses tailor mucilage properties and salt tolerance. DOI: 10.1111/nph.17056 ; PMID: 33128402
- The FLA4-FEI Pathway: A Unique and Mysterious Signaling Module Related to Cell Wall Structure and Stress Signaling. DOI: 10.3390/genes12020145 ; PMID: 33499195
- Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. DOI: 10.1104/pp.103.021170 ; PMID: 12805588
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. DOI: 10.1074/mcp.M700099-MCP200 ; PMID: 17644812
- Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins. DOI: 10.1074/mcp.M300079-MCP200 ; PMID: 14517339
Gene Resources
- UniProt: A0A5S9XK06
- EMBL: CACRSJ010000106, CACSHJ010000089
- AlphaFoldDB: A0A5S9XK06
- EnsemblPlants: AT3G46550.1
- Gramene: AT3G46550.1
- KEGG: ath:AT3G46550
- Orthologous matrix: GIFLWCI
- ExpressionAtlas: AT3G46550
- InterPro: IPR000782, IPR033254, IPR036378
- PANTHER: PTHR32382, PTHR32382:SF0
- SUPFAM: SSF82153
- PROSITE: PS50213
- Gene3D: 2.30.180.10
- OrthoDB: A0A5S9XK06
- SWISS-MODEL: A0A5S9XK06
Homologs
- Capsicum annuum T459_18164
- Malus domestica MD04G1100000
- Nicotiana attenuata A4A49_28632
- Oryza sativa DEAP1
- Ricinus communis 30078.t000138, 29643.t000002
- Solanum lycopersicum Solyc06g075220.1
- Solanum tuberosum Soltu.DM.06G030590
- Vitis vinifera GSVIVT01030085001
- Zea mays AC209784.3_FGP011
Sequences
cDNA Sequence
- >AT3G46550.1
AGCTTAATTAATTCACAGCTAGGAAACTCACATGCAAACGAAAAAAACTTTAATGACATTATTATTAAAACTATACCCCACGTGGGCACCACATAAAATACATTAATTTTATTTCAATCAAATAAATCTTCTCACCAAAATCTAATCACTACAAGACTAGAAGTGTCCACAAAAGCATCTCTCTTTCTGACACAATGACATCTGTTTTGTTCTACGCGTGAACTTCAAACTCCCAAACACCGCGCGTCATACAATTCCCAACGATGTCTCTAATTTTAATTTCGTCCACCAAACTTCACTCACACATCACTCCCATCTCTCTATCCACTCACTTCCTTCTCTGTGTTCTTCTCTTTACCAATCTCATGACCTAACTCAAAAAATAATGGCGAACGTAATCTCAATTTCCCATTTTACCCTTCTCGCATTACCTTATTTACTTCTCCTCCTATCTTCCACCGCCGCCGCAATTAACGTCACCGCCGTCCTCTCCTCTTTCCCTAATCTCTCATCTTTCTCAAACCTCCTCGTCTCTTCCGGCATCGCTGCCGAACTCTCCGGTAGAAACTCATTAACCCTCCTCGCCGTTCCCAATTCTCAATTCTCCTCCGCCTCCTTGGACCTCACGCGCCGCCTACCTCCTTCCGCCCTAGCAGATCTCCTCCGCTTCCATGTCCTCCTCCAGTTCCTTTCAGATTCCGATCTCCGACGTATTCCACCGTCAGGCTCCGCCGTCACTACTCTCTACGAAGCTTCCGGTCGTACATTCTTTGGATCTGGATCCGTTAACGTAACCCGTGACCCGGCTTCAGGATCCGTCACGATCGGATCTCCAGCCACCAAAAACGTCACTGTGTTAAAGCTTCTCGAGACCAAACCTCCCAACATAACCGTCCTCACCGTGGACTCCCTCATCGTCCCCACCGGAATCGATATCACCGCATCGGAGACTCTCACTCCACCGCCGACGTCAACATCTCTCTCCCCTCCACCGGCGGGAATCAATCTCACTCAGATACTAATCAACGGACACAACTTCAACGTCGCTCTATCCCTCCTCGTCGCTTCCGGTGTCATAACAGAATTCGAAAACGACGAACGTGGCGCCGGCATCACAGTCTTCGTCCCCACCGACTCCGCCTTCTCCGATCTCCCTTCCAACGTTAACCTCCAGTCATTACCGGCGGAGCAAAAAGCATTCGTGTTAAAATTCCACGTGCTACATTCATACTACACTCTCGGTTCACTAGAATCAATAACCAACCCGGTTCAACCGACATTAGCCACTGAAGAAATGGGAGCCGGTTCATACACTCTCAACATCTCCCGGGTTAACGGGTCAATCGTAACGATCAATTCGGGTGTGGTTTTAGCTGTTGTGACTCAAACGGCTTTTGATCAAAACCCGGTTTCTGTTTTCGGAGTATCCAAAGTTCTTTTGCCTAAAGAACTATTTCCAAAATCGGGTCAACCCGTTGCCACAGCTCCTCCACAGGAGATTTCTTTGTCGCCGGAGAGTTCTAGTGAACAGCCGTCACGACTAGTATCACCACCGCGTGAGATAGTTTCTTCCGGCGCGGTTAAAAGACCACTTGGTTTCTTGGTCTTGTGGTGTTGGTGTATAGCATTTTGTTATGTTTTGGTATGATTTTTTTTTCTTTCTTTCTTTTATCACATAATGTTTTGCCTTCGATTAGGGCTTTATTTATTTTTACTGGATTTTTTTTTTCACAAGGGTTTATATTTATTCACGATAATGTTATTGTATTTGAGTCGAGGAAAAAACAAATTCACTTTCCCATGTAAATTTGGATTGAATGGGCGATTTTGGGTAAAACCCATGACTATATAAATCCTTCATTTTCTCTTTTGCTCTTGAATCATCTTTTACCGAAGGTTATTCCCAGTTTCAAC
CDS Sequence
- >AT3G46550.1
ATGGCGAACGTAATCTCAATTTCCCATTTTACCCTTCTCGCATTACCTTATTTACTTCTCCTCCTATCTTCCACCGCCGCCGCAATTAACGTCACCGCCGTCCTCTCCTCTTTCCCTAATCTCTCATCTTTCTCAAACCTCCTCGTCTCTTCCGGCATCGCTGCCGAACTCTCCGGTAGAAACTCATTAACCCTCCTCGCCGTTCCCAATTCTCAATTCTCCTCCGCCTCCTTGGACCTCACGCGCCGCCTACCTCCTTCCGCCCTAGCAGATCTCCTCCGCTTCCATGTCCTCCTCCAGTTCCTTTCAGATTCCGATCTCCGACGTATTCCACCGTCAGGCTCCGCCGTCACTACTCTCTACGAAGCTTCCGGTCGTACATTCTTTGGATCTGGATCCGTTAACGTAACCCGTGACCCGGCTTCAGGATCCGTCACGATCGGATCTCCAGCCACCAAAAACGTCACTGTGTTAAAGCTTCTCGAGACCAAACCTCCCAACATAACCGTCCTCACCGTGGACTCCCTCATCGTCCCCACCGGAATCGATATCACCGCATCGGAGACTCTCACTCCACCGCCGACGTCAACATCTCTCTCCCCTCCACCGGCGGGAATCAATCTCACTCAGATACTAATCAACGGACACAACTTCAACGTCGCTCTATCCCTCCTCGTCGCTTCCGGTGTCATAACAGAATTCGAAAACGACGAACGTGGCGCCGGCATCACAGTCTTCGTCCCCACCGACTCCGCCTTCTCCGATCTCCCTTCCAACGTTAACCTCCAGTCATTACCGGCGGAGCAAAAAGCATTCGTGTTAAAATTCCACGTGCTACATTCATACTACACTCTCGGTTCACTAGAATCAATAACCAACCCGGTTCAACCGACATTAGCCACTGAAGAAATGGGAGCCGGTTCATACACTCTCAACATCTCCCGGGTTAACGGGTCAATCGTAACGATCAATTCGGGTGTGGTTTTAGCTGTTGTGACTCAAACGGCTTTTGATCAAAACCCGGTTTCTGTTTTCGGAGTATCCAAAGTTCTTTTGCCTAAAGAACTATTTCCAAAATCGGGTCAACCCGTTGCCACAGCTCCTCCACAGGAGATTTCTTTGTCGCCGGAGAGTTCTAGTGAACAGCCGTCACGACTAGTATCACCACCGCGTGAGATAGTTTCTTCCGGCGCGGTTAAAAGACCACTTGGTTTCTTGGTCTTGTGGTGTTGGTGTATAGCATTTTGTTATGTTTTGGTATGA
Protein Sequence
- >AT3G46550.1
MANVISISHFTLLALPYLLLLLSSTAAAINVTAVLSSFPNLSSFSNLLVSSGIAAELSGRNSLTLLAVPNSQFSSASLDLTRRLPPSALADLLRFHVLLQFLSDSDLRRIPPSGSAVTTLYEASGRTFFGSGSVNVTRDPASGSVTIGSPATKNVTVLKLLETKPPNITVLTVDSLIVPTGIDITASETLTPPPTSTSLSPPPAGINLTQILINGHNFNVALSLLVASGVITEFENDERGAGITVFVPTDSAFSDLPSNVNLQSLPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLATEEMGAGSYTLNISRVNGSIVTINSGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELFPKSGQPVATAPPQEISLSPESSSEQPSRLVSPPREIVSSGAVKRPLGFLVLWCWCIAFCYVLV