Gene Details:

• Gene ID: AT3G46510
• Gene Symbol: ATPUB13, PUB13
• Gene Name: ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13
• Description: plant U-box 13;(source:Araport11)
• TAIR Accession:
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G46510.1

Plant Ontology Annotations:

• PO:0000056  — flower bud — floral bud (exact), yema floral (Spanish, exact), 花芽 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009047  — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)

Function-related keywords:

• flower bud ,  root ,  shoot system ,  vascular leaf ,  stem ,  shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen

Literature:

• Armadillo repeat proteins: beyond the animal kingdom.   DOI:  10.1016/s0962-8924(03)00167-3 ;  PMID:  12946625
• A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family.   DOI:  10.1104/pp.103.029553 ;  PMID:  14657406
• Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis.   DOI:  10.1104/pp.108.123380 ;  PMID:  18552232
• Direct ubiquitination of pattern recognition receptor FLS2 attenuates plant innate immunity.   DOI:  10.1126/science.1204903 ;  PMID:  21680842
• The U-Box/ARM E3 ligase PUB13 regulates cell death, defense, and flowering time in Arabidopsis.   DOI:  10.1104/pp.111.192617 ;  PMID:  22383540
• PUB13, a U-box/ARM E3 ligase, regulates plant defense, cell death, and flowering time.   DOI:  10.4161/psb.20703 ;  PMID:  22827949
• The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice.   DOI:  10.1371/journal.ppat.1004629 ;  PMID:  25658451
• The dominant negative ARM domain uncovers multiple functions of PUB13 in Arabidopsis immunity, flowering, and senescence.   DOI:  10.1093/jxb/erv148 ;  PMID:  25873653
• PLANT U-BOX PROTEIN10 Regulates MYC2 Stability in Arabidopsis.   DOI:  10.1105/tpc.15.00385 ;  PMID:  26163577
• Degradation of the ABA co-receptor ABI1 by PUB12/13 U-box E3 ligases.   DOI:  10.1038/ncomms9630 ;  PMID:  26482222
• New players in ABA signaling: identification of PUB12/13 involved in degradation of ABA co-receptor ABI1.   DOI:  10.1007/s11427-015-4947-8 ;  PMID:  26511514
• Arabidopsis E3 ubiquitin ligase PLANT U-BOX13 (PUB13) regulates chitin receptor LYSIN MOTIF RECEPTOR KINASE5 (LYK5) protein abundance.   DOI:  10.1111/nph.14472 ;  PMID:  28195333
• Arabidopsis ubiquitin ligase PUB12 interacts with and negatively regulates Chitin Elicitor Receptor Kinase 1 (CERK1).   DOI:  10.1371/journal.pone.0188886 ;  PMID:  29182677
• Regulation of Arabidopsis brassinosteroid receptor BRI1 endocytosis and degradation by plant U-box PUB12/PUB13-mediated ubiquitination.   DOI:  10.1073/pnas.1712251115 ;  PMID:  29432171
• Genetic buffering of cyclic AMP in Arabidopsis thaliana compromises the plant immune response triggered by an avirulent strain of Pseudomonas syringae pv. tomato.   DOI:  10.1111/tpj.14275 ;  PMID:  30735606
• News from the PUB: plant U-box type E3 ubiquitin ligases.   DOI:  10.1093/jxb/erx411 ;  PMID:  29237060
• The receptor-like cytoplasmic kinase CDG1 negatively regulates Arabidopsis pattern-triggered immunity and is involved in AvrRpm1-induced RIN4 phosphorylation.   DOI:  10.1093/plcell/koab033 ;  PMID:  33619522

Sequences: