Gene Details:

• Gene ID: AT3G46460
• Gene Symbol: UBC13
• Gene Name: ubiquitin-conjugating enzyme 13
• Description: ubiquitin-conjugating enzyme 13;(source:Araport11)
• TAIR Accession:
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G46460.1     AT3G46460.2     AT3G46460.3

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)

Germplasm Phenotype:

• ubc7/13/14  — More sensitive to NaCl, the ABA analog PBI425.

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen

Literature:

• Ubiquitylation in plants: a post-genomic look at a post-translational modification.   DOI:  10.1016/s1360-1385(01)02080-5 ;  PMID:  11590065
• Protein degradation in signaling.   DOI:  10.1016/s1369-5266(00)00100-x ;  PMID:  11019805
• Components of nucleotide excision repair and DNA damage tolerance in Arabidopsis thaliana.   DOI:  10.1002/em.20094 ;  PMID:  15645454
• Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis.   DOI:  10.1104/pp.105.067983 ;  PMID:  16339806
• Biochemical function of typical and variant Arabidopsis thaliana U-box E3 ubiquitin-protein ligases.   DOI:  10.1042/BJ20071568 ;  PMID:  18393940
• A lysine-63-linked ubiquitin chain-forming conjugase, UBC13, promotes the developmental responses to iron deficiency in Arabidopsis roots.   DOI:  10.1111/j.1365-313X.2010.04150.x ;  PMID:  20113438
• Functional implications of K63-linked ubiquitination in the iron deficiency response of Arabidopsis roots.   DOI:  10.3389/fpls.2013.00542 ;  PMID:  24427162
• Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin ligase enzymes.   DOI:  10.1186/s12870-015-0660-9 ;  PMID:  26556605
• Arabidopsis OTU1, a linkage-specific deubiquitinase, is required for endoplasmic reticulum-associated protein degradation.   DOI:  10.1111/tpj.14524 ;  PMID:  31491807
• Coordinated regulation of plant immunity by poly(ADP-ribosyl)ation and K63-linked ubiquitination.   DOI:  10.1016/j.molp.2021.08.013 ;  PMID:  34418551
• Protein degradation in signaling.   DOI:  10.1016/s1369-5266(00)00100-x ;  PMID:  11019805
• Arabidopsis thaliana UBC13: implication of error-free DNA damage tolerance and Lys63-linked polyubiquitylation in plants.   DOI:  10.1007/s11103-006-0007-x ;  PMID:  16786304
• Arabidopsis UEV1D promotes Lysine-63-linked polyubiquitination and is involved in DNA damage response.   DOI:  10.1105/tpc.107.051862 ;  PMID:  18178771
• Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.   DOI:  10.1016/j.jprot.2017.06.004 ;  PMID:  28627464

Sequences: