Information report for AT3G46440
Gene Details
|
|
Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen tube cell , pollen
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- The Arabidopsis IspH homolog is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. DOI: 10.1104/pp.104.058735 ; PMID: 15863698
- Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. DOI: 10.1111/j.1365-313X.2005.02584.x ; PMID: 16367961
- Proteomic analysis and extensive protein identification from dry, germinating Arabidopsis seeds and young seedlings. DOI: 10.5483/bmbrep.2005.38.6.650 ; PMID: 16336779
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. DOI: 10.1104/pp.108.126979 ; PMID: 18805951
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Role of UDP-Glucuronic Acid Decarboxylase in Xylan Biosynthesis in Arabidopsis. DOI: 10.1016/j.molp.2016.04.013 ; PMID: 27179920
- Cytosol-Localized UDP-Xylose Synthases Provide the Major Source of UDP-Xylose for the Biosynthesis of Xylan and Xyloglucan. DOI: 10.1093/pcp/pcw179 ; PMID: 28011867
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178VDJ4
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A178VDJ4
- EnsemblPlants: AT3G46440.1, AT3G46440.2
- Gramene: AT3G46440.1, AT3G46440.2
- KEGG: ath:AT3G46440
- Orthologous matrix: KYPKVKY
- ExpressionAtlas: AT3G46440
- InterPro: IPR016040, IPR036291, IPR044516
- PANTHER: PTHR43078, PTHR43078:SF49
- SUPFAM: SSF51735
- Gene3D: 3.40.50.720
- OrthoDB: A0A178VDJ4
- SWISS-MODEL: A0A178VDJ4
- Conserved Domain Database: cd05230
Homologs
- Glycine max ST1
- Malus domestica MDP0000247737
Sequences
cDNA Sequence
- >AT3G46440.1
AATGCCACATCAGATAATACGTTTGGTCAAACGTTGTCGTTGTAATCGAGTAACCACAAATTAACATTTGATATTGATTTTTCCACTTTTCGTGTTTTTTAAGTCACTAATCTTATCTCACCCAAAACAAATTAAACAAACACACAAAAAAAAGTCTAAAAAAAGAATTTCTCAACAAAAAAATAAAAATATCTAACTTTTCCAGATAATATATTCAAAATTTTACAGAGAGGAAGAAGAAGTTCCCGACACTTGTGAGAGACTATAAAAGTATACGATCTCCTCCTCTCGCTCTCTTCAGATCACAAAGTTTTCGTTTTTAGGGTTCTCTCATCGATCTCGGTTTGTGATCTTCTTCTTCATCAATGGCGTCTAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCTCTCCGTAATTCCAAGTTTTGTCAGTCAAATATGAGGATTTTGATCTCAGGAGGAGCTGGATTCATTGGTTCTCACCTTGTTGATAAGCTGATGGAAAACGAAAAGAATGAGGTGATTGTTGCTGATAACTATTTCACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACGATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAAGACCAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGGATTTTGCTTACCTCAACCTCGGAGGTATATGGAGATCCTCTCATTCATCCCCAGCCTGAGAGCTATTGGGGAAATGTCAACCCAATTGGTGTTAGGAGCTGTTATGATGAAGGCAAGCGTGTTGCTGAGACCTTGATGTTTGACTACCACAGGCAACATGGAATTGAAATCCGCATTGCTAGAATCTTCAACACTTATGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACTCCGGGGTGAGGCATTGACTGTTCAGAAACCAGGGACACAGACTCGCAGTTTCTGTTATGTATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGATGACACTGGTCCCATCAACATCGGTAACCCAGGTGAGTTTACAATGGTGGAGTTGGCTGAGACAGTGAAAGAGCTGATTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCGGATGATCCAAGACAGAGGAAGCCAGACATCACAAAGGCTAAAGAAGTGTTGGGATGGGAACCAAAGGTGAAGCTTCGTGAAGGCCTTCCACTTATGGAAGAAGACTTCAGGCTAAGGCTCGGAGTCCACAAGAACTAAAACTCCATCACCGATCACACGCAAACGTGAATGCACTACATAACCAAGTTCTACTTTTCATATTCCATGGTGCAAGCGGTTGGTTTCATATAATATGTTTCTACTTTCCACAGTCGAAATTATTCCTAGAGAAAAATAAAGATTATGAACGAATGCTTTTTATATTTAAGGAAGATAAAATTTACTTTCTTGCCATAGCTTACGCAGCTACGGTGACTCCATTTTTTCAAATCTTGAGTGAGGTAAACAATGGCG - >AT3G46440.2
AATGCCACATCAGATAATACGTTTGGTCAAACGTTGTCGTTGTAATCGAGTAACCACAAATTAACATTTGATATTGATTTTTCCACTTTTCGTGTTTTTTAAGTCACTAATCTTATCTCACCCAAAACAAATTAAACAAACACACAAAAAAAAGTCTAAAAAAAGAATTTCTCAACAAAAAAATAAAAATATCTAACTTTTCCAGATAATATATTCAAAATTTTACAGAGAGGAAGAAGAAGTTCCCGACACTTGTGAGAGACTATAAAAGTATACGATCTCCTCCTCTCGCTCTCTTCAGATCACAAAGTTTTCGTTTTTAGGGTTCTCTCATCGATCTCGGTTTGTGATCTTCTTCTTCATCAATGGCGTCTAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCTCTCCGTAATTCCAAGTTTTGTCAGTCAAATATGAGGATTTTGATCTCAGGAGGAGCTGGATTCATTGGTTCTCACCTTGTTGATAAGCTGATGGAAAACGAAAAGAATGAGGTGATTGTTGCTGATAACTATTTCACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACGATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAAGACCAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGGATTTTGCTTACCTCAACCTCGGAGGTATATGGAGATCCTCTCATTCATCCCCAGCCTGAGAGCTATTGGGGAAATGTCAACCCAATTGGTGTTAGGAGCTGTTATGATGAAGGCAAGCGTGTTGCTGAGACCTTGATGTTTGACTACCACAGGCAACATGGAATTGAAATCCGCATTGCTAGAATCTTCAACACTTATGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACTCCGGGGTGAGGCATTGACTGTTCAGAAACCAGGGACACAGACTCGCAGTTTCTGTTATGTATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGATGACACTGGTCCCATCAACATCGGTAACCCAGGTGAGTTTACAATGGTGGAGTTGGCTGAGACAGTGAAAGAGCTGATTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCGGATGATCCAAGACAGAGGAAGCCAGACATCACAAAGGCTAAAGAAGTGTTGGGATGGGAACCAAAGGTGAAGCTTCGTGAAGGCCTTCCACTTATGGAAGAAGACTTCAGGCTAAGGCTCGGAGTCCACAAGAACTAAAACTCCATCACCGATCACACGCAAACGTGAATGCACTACATAACCAAGTTCTACTTTTCATATTCCATGGTGCAAGCGGTTGGTTTCATATAATATGTTTCTACTTTCCACAGTCGAAATTATTCCTAGAGAAAAATAAAGATTATGAACGAATGCTTTTTATATTTAAGGAAGATAAAATTTACTTTCTTGCCATAGCTTACGCAGCTACGGTGACTCCATTTTTTCAAATCTTGAGTGAGGTAAACAATGGCG
CDS Sequence
- >AT3G46440.1
ATGGCGTCTAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCTCTCCGTAATTCCAAGTTTTGTCAGTCAAATATGAGGATTTTGATCTCAGGAGGAGCTGGATTCATTGGTTCTCACCTTGTTGATAAGCTGATGGAAAACGAAAAGAATGAGGTGATTGTTGCTGATAACTATTTCACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACGATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAAGACCAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGGATTTTGCTTACCTCAACCTCGGAGGTATATGGAGATCCTCTCATTCATCCCCAGCCTGAGAGCTATTGGGGAAATGTCAACCCAATTGGTGTTAGGAGCTGTTATGATGAAGGCAAGCGTGTTGCTGAGACCTTGATGTTTGACTACCACAGGCAACATGGAATTGAAATCCGCATTGCTAGAATCTTCAACACTTATGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACTCCGGGGTGAGGCATTGACTGTTCAGAAACCAGGGACACAGACTCGCAGTTTCTGTTATGTATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGATGACACTGGTCCCATCAACATCGGTAACCCAGGTGAGTTTACAATGGTGGAGTTGGCTGAGACAGTGAAAGAGCTGATTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCGGATGATCCAAGACAGAGGAAGCCAGACATCACAAAGGCTAAAGAAGTGTTGGGATGGGAACCAAAGGTGAAGCTTCGTGAAGGCCTTCCACTTATGGAAGAAGACTTCAGGCTAAGGCTCGGAGTCCACAAGAACTAA - >AT3G46440.2
ATGGCGTCTAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCTCTCCGTAATTCCAAGTTTTGTCAGTCAAATATGAGGATTTTGATCTCAGGAGGAGCTGGATTCATTGGTTCTCACCTTGTTGATAAGCTGATGGAAAACGAAAAGAATGAGGTGATTGTTGCTGATAACTATTTCACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACGATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAAGACCAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGGATTTTGCTTACCTCAACCTCGGAGGTATATGGAGATCCTCTCATTCATCCCCAGCCTGAGAGCTATTGGGGAAATGTCAACCCAATTGGTGTTAGGAGCTGTTATGATGAAGGCAAGCGTGTTGCTGAGACCTTGATGTTTGACTACCACAGGCAACATGGAATTGAAATCCGCATTGCTAGAATCTTCAACACTTATGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACTCCGGGGTGAGGCATTGACTGTTCAGAAACCAGGGACACAGACTCGCAGTTTCTGTTATGTATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGATGACACTGGTCCCATCAACATCGGTAACCCAGGTGAGTTTACAATGGTGGAGTTGGCTGAGACAGTGAAAGAGCTGATTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCGGATGATCCAAGACAGAGGAAGCCAGACATCACAAAGGCTAAAGAAGTGTTGGGATGGGAACCAAAGGTGAAGCTTCGTGAAGGCCTTCCACTTATGGAAGAAGACTTCAGGCTAAGGCTCGGAGTCCACAAGAACTAA
Protein Sequence
- >AT3G46440.1
MASSDKQTSPKPPPSPSPLRNSKFCQSNMRILISGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLMRLMEGDDTGPINIGNPGEFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDITKAKEVLGWEPKVKLREGLPLMEEDFRLRLGVHKN - >AT3G46440.2
MASSDKQTSPKPPPSPSPLRNSKFCQSNMRILISGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLMRLMEGDDTGPINIGNPGEFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDITKAKEVLGWEPKVKLREGLPLMEEDFRLRLGVHKN