Gene Details:

• Gene ID: AT3G44680
• Gene Symbol: AtHDA9, AtHDAC9, HDA09, HDA9, HDAC9
• Gene Name: histone deacetylase 9, histone deacetylase 9
• Description: histone deacetylase 9;(source:Araport11)
• TAIR Accession:
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G44680.1

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0005052  — plant callus — callo (Spanish, exact), portion of plant callus tissue (exact), 植物カルス (Japanese, exact), callus (broad)

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  plant callus

Literature:

• Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.   DOI:  10.1093/nar/gkf660 ;  PMID:  12466527
• Effectiveness of RNA interference in transgenic plants.   DOI:  10.1016/j.febslet.2004.04.043 ;  PMID:  15147899
• A transcriptome-based characterization of habituation in plant tissue culture.   DOI:  10.1104/pp.105.076059 ;  PMID:  16489130
• A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs.   DOI:  10.1016/j.ygeno.2012.05.013 ;  PMID:  22664253
• Arabidopsis histone deacetylase HDA9 regulates flowering time through repression of AGL19.   DOI:  10.1016/j.bbrc.2012.11.102 ;  PMID:  23237803
• HISTONE DEACETYLASE 9 represses seedling traits in Arabidopsis thaliana dry seeds.   DOI:  10.1111/tpj.12646 ;  PMID:  25146719
• Histone deacetylation-mediated cellular dedifferentiation in Arabidopsis.   DOI:  10.1016/j.jplph.2015.12.006 ;  PMID:  26724747
• POWERDRESS-mediated histone deacetylation is essential for thermomorphogenesis in Arabidopsis thaliana.   DOI:  10.1371/journal.pgen.1007280 ;  PMID:  29547672
• HOS15 Interacts with the Histone Deacetylase HDA9 and the Evening Complex to Epigenetically Regulate the Floral Activator GIGANTEA.   DOI:  10.1105/tpc.18.00721 ;  PMID:  30606777
• The EC-HDA9 complex rhythmically regulates histone acetylation at the TOC1 promoter in Arabidopsis.   DOI:  10.1038/s42003-019-0377-7 ;  PMID:  31044168
• Arabidopsis histone deacetylase HDA15 directly represses plant response to elevated ambient temperature.   DOI:  10.1111/tpj.14492 ;  PMID:  31400169
• HISTONE DEACETYLASE 9 Functions with Polycomb Silencing to Repress FLOWERING LOCUS C Expression.   DOI:  10.1104/pp.19.00793 ;  PMID:  31641076
• HISTONE DEACETYLASE 9 stimulates auxin-dependent thermomorphogenesis in Arabidopsis thaliana by mediating H2A.Z depletion.   DOI:  10.1073/pnas.1911694116 ;  PMID:  31767749
• Histone Deacetylase HDA9 With ABI4 Contributes to Abscisic Acid Homeostasis in Drought Stress Response.   DOI:  10.3389/fpls.2020.00143 ;  PMID:  32158458
• PWR/HDA9/ABI4 Complex Epigenetically Regulates ABA Dependent Drought Stress Tolerance in Arabidopsis.   DOI:  10.3389/fpls.2020.00623 ;  PMID:  32528497
• The diverse and unanticipated roles of histone deacetylase 9 in coordinating plant development and environmental acclimation.   DOI:  10.1093/jxb/eraa335 ;  PMID:  32687569
• The Transcriptional Corepressor HOS15 Mediates Dark-Induced Leaf Senescence in Arabidopsis.   DOI:  10.3389/fpls.2022.828264 ;  PMID:  35283908
• PICKLE associates with histone deacetylase 9 to mediate vegetative phase change in Arabidopsis.   DOI:  10.1111/nph.18174 ;  PMID:  35460275
• The HDA9-HY5 module epigenetically regulates flowering time in Arabidopsis thaliana.   DOI:  10.1002/jcp.30761 ;  PMID:  35491506
• Arabidopsis HISTONE DEACETYLASE 9 Stimulates Hypocotyl Cell Elongation by Repressing GIGANTEA Expression Under Short Day Photoperiod.   DOI:  10.3389/fpls.2022.950378 ;  PMID:  35923878
• HY5-HDA9 orchestrates the transcription of HsfA2 to modulate salt stress response in Arabidopsis.   DOI:  10.1111/jipb.13372 ;  PMID:  36165397
• HISTONE DEACETYLASE 9 transduces heat signal in plant cells.   DOI:  10.1073/pnas.2206846119 ;  PMID:  36322735
• The HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE15-HISTONE DEACETYLASE9 complex associates with HYPONASTIC LEAVES 1 to modulate microRNA expression in response to abscisic acid signaling.   DOI:  10.1093/plcell/koad132 ;  PMID:  37195876
• Histone Deacetylases Regulate MORE AXILLARY BRANCHED 2-Dependent Germination of Arabidopsis thaliana.   DOI:  10.1093/pcp/pcad047 ;  PMID:  37279553

Sequences: