Information report for AT3G44260
Gene Details
|
|
Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- New molecular phenotypes in the dst mutants of Arabidopsis revealed by DNA microarray analysis. DOI: 10.1105/tpc.010295 ; PMID: 11752382
- Identification of unstable transcripts in Arabidopsis by cDNA microarray and specific clock-controlled genes. DOI: 10.1073/pnas.152204099 ; PMID: 12167669
- Plant body weight-induced secondary growth in Arabidopsis and its transcription phenotype revealed by whole-transcriptome profiling. DOI: 10.1104/pp.104.038844 ; PMID: 15194820
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- Transcript profiling in Arabidopsis reveals complex responses to global inhibition of DNA methylation and histone deacetylation. DOI: 10.1074/jbc.M409053200 ; PMID: 15516340
- and darkness-regulated Arabidopsis genes: a focus on calmodulin-like and XTH genes. DOI: 10.1111/j.1469-8137.2004.01238.x ; PMID: 15720654
- The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. DOI: 10.1105/tpc.105.035568 ; PMID: 16214899
- Identification and characterization of COI1-dependent transcription factor genes involved in JA-mediated response to wounding in Arabidopsis plants. DOI: 10.1007/s00299-007-0410-z ; PMID: 17786451
- Promoter DNA hypermethylation and gene repression in undifferentiated Arabidopsis cells. DOI: 10.1371/journal.pone.0003306 ; PMID: 18827894
- Mechanical stress induces biotic and abiotic stress responses via a novel cis-element. DOI: 10.1371/journal.pgen.0030172 ; PMID: 17953483
- The Arabidopsis homologs of CCR4-associated factor 1 show mRNA deadenylation activity and play a role in plant defence responses. DOI: 10.1038/cr.2008.317 ; PMID: 19065152
- Arabidopsis deadenylases AtCAF1a and AtCAF1b play overlapping and distinct roles in mediating environmental stress responses. DOI: 10.1104/pp.109.149005 ; PMID: 19955262
- Identification of Arabidopsis CCR4-NOT Complexes with Pumilio RNA-Binding Proteins, APUM5 and APUM2. DOI: 10.1093/pcp/pcz089 ; PMID: 31093672
Gene Resources
- UniProt: A0A654FI64
- EMBL: CACRSJ010000106
- AlphaFoldDB: A0A654FI64
- EnsemblPlants: AT3G44260.1
- Gramene: AT3G44260.1
- KEGG: ath:AT3G44260
- Orthologous matrix: HTFQQIT
- ExpressionAtlas: AT3G44260
- InterPro: IPR006941, IPR012337, IPR036397
- PANTHER: PTHR10797
- SUPFAM: SSF53098
- Gene3D: 3.30.420.10
- SWISS-MODEL: A0A654FI64
Homologs
- Oryza sativa OsCAF1B
Sequences
cDNA Sequence
- >AT3G44260.1
CTACAACATACATATATTCAGTGTATATAACCCAATAATGACAAATACTAAAATAGAAAAAACGAATAACAATAAATAAAAGAATTAAACCCAGTAGAGAGTGGCCAACTTGGACCGAGTCAAGTTACGTTACATAGTCACTCAAACCCCACCACTTGACGCGTTTCTCGTCCCCACTTCTTCTTCCTCGCAACTCTTTCACTCTGTTTCACACACACATTCTCACATATATATAACACAAACTAACTCTAATCACCAAATCATAAACCAAAGCTTCTAAATTCAGTTTCAATGGCGATCATTAAACCAAACCGAGATCTCAAACCGGACGGTGTCACAGTCGTGACTCGTGAAGTCTGGGCGGAGAATCTCGAATCAGAATTTGAACTAATCAGCGAAATCATCGACGATTATCCATTTATCTCAATGGACACAGAATTTCCCGGCGTGATTTTCAAATCCGATCTCCGGTTTACGAATCCCGACGATCTTTATACTCTTCTTAAAGCTAACGTCGACGCTCTCAGCTTAATCCAAGTCGGTCTCACTCTCTCTGATGTTAACGGTAACCTCCCAGACCTCGGTGACGATCTTCACCGAGGATTCATCTGGGAGTTTAATTTCCGTGACTTCGACGTGGCGCGTGACGCACACGCGCCTGATTCGATCGAGTTGCTTCGTCGGCAAGGTATCGATTTTGAGCGGAATTGTCGCGACGGTGTTGAGTCGGAGAGGTTTGCGGAGCTGATGATGTCGTCGGGGCTTGTTTGTAATGAGGAAGTGAGCTGGGTGACGTTTCATAGCGCGTATGATTTCGGTTACTTGATGAAGATTCTCACGCGCCGAGAATTGCCCGGCGCGTTGGGGGAGTTTAAGCGCGTGATGAGAGTGTTGTTTGGGGAGCGTGTGTATGATGTGAAGCATATGATGAAGTTTTGTGAAAGGAGATTGTTTGGTGGTTTGGACCGGGTTGCAAGGACGCTTGAGGTTAACCGGGCGGTTGGGAAATGTCATCAAGCTGGTTCGGATAGTTTGCTTACGTGGCATGCGTTTCAGAGGATGAGGGATTTGTATTTTGTTCAAGATGGGCCGGAGAAACATGCTGGGGTTTTGTATGGGCTTGAGGTTTTTTAAGGGGTTTCTTTTTTTTTATAATTCAAATTCAATTAATTAACTCATTTTTTTTTTATTTTTTTTTGGTAGTGTCAATTAATTAACTCAATTGATCCTTGTAGTTAAACGTTCTTTGGAAAGAAGAAATTTTAGAAATTTGAAAATTCATTTGTTTAGTCCACATTTAAATCATATACAAATCGATATGAATTTAAAAACAGATTCA
CDS Sequence
- >AT3G44260.1
ATGGCGATCATTAAACCAAACCGAGATCTCAAACCGGACGGTGTCACAGTCGTGACTCGTGAAGTCTGGGCGGAGAATCTCGAATCAGAATTTGAACTAATCAGCGAAATCATCGACGATTATCCATTTATCTCAATGGACACAGAATTTCCCGGCGTGATTTTCAAATCCGATCTCCGGTTTACGAATCCCGACGATCTTTATACTCTTCTTAAAGCTAACGTCGACGCTCTCAGCTTAATCCAAGTCGGTCTCACTCTCTCTGATGTTAACGGTAACCTCCCAGACCTCGGTGACGATCTTCACCGAGGATTCATCTGGGAGTTTAATTTCCGTGACTTCGACGTGGCGCGTGACGCACACGCGCCTGATTCGATCGAGTTGCTTCGTCGGCAAGGTATCGATTTTGAGCGGAATTGTCGCGACGGTGTTGAGTCGGAGAGGTTTGCGGAGCTGATGATGTCGTCGGGGCTTGTTTGTAATGAGGAAGTGAGCTGGGTGACGTTTCATAGCGCGTATGATTTCGGTTACTTGATGAAGATTCTCACGCGCCGAGAATTGCCCGGCGCGTTGGGGGAGTTTAAGCGCGTGATGAGAGTGTTGTTTGGGGAGCGTGTGTATGATGTGAAGCATATGATGAAGTTTTGTGAAAGGAGATTGTTTGGTGGTTTGGACCGGGTTGCAAGGACGCTTGAGGTTAACCGGGCGGTTGGGAAATGTCATCAAGCTGGTTCGGATAGTTTGCTTACGTGGCATGCGTTTCAGAGGATGAGGGATTTGTATTTTGTTCAAGATGGGCCGGAGAAACATGCTGGGGTTTTGTATGGGCTTGAGGTTTTTTAA
Protein Sequence
- >AT3G44260.1
MAIIKPNRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF