Gene Details:

• Gene ID: AT3G42950
• Gene Symbol: PGF6
• Gene Name: Polygalacturonase Clade F 6
• Description: Pectin lyase-like superfamily protein;(source:Araport11)
• TAIR Accession: locus:2078531
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G42950.1

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0000293  — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)

Gene Ontology:

• GO:0009734  — acts upstream of or within — auxin-activated signaling pathway
• GO:0009059  — acts upstream of or within — macromolecule biosynthetic process
• GO:0016070  — acts upstream of or within — RNA metabolic process
• GO:0009507  — located in — chloroplast
• GO:0005975  — involved in — carbohydrate metabolic process
• GO:0004650  — enables — polygalacturonase activity

Function-related keywords:

• shoot axis apex ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  guard cell

Literature:

• Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis.   DOI:  10.1104/pp.106.082289 ;  PMID:  16920880
• Patterns of expansion and expression divergence in the plant polygalacturonase gene family.   DOI:  10.1186/gb-2006-7-9-r87 ;  PMID:  17010199
• Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis.   DOI:  10.1007/s11103-004-2142-6 ;  PMID:  15604721
• GeneCAT–novel webtools that combine BLAST and co-expression analyses.   DOI:  10.1093/nar/gkn292 ;  PMID:  18480120
• Mechanical load induces upregulation of transcripts for a set of genes implicated in secondary wall formation in the supporting tissue of Arabidopsis thaliana.   DOI:  10.1007/s10265-009-0251-7 ;  PMID:  19582540
• The pectin lyases in Arabidopsis thaliana: evolution, selection and expression profiles.   DOI:  10.1371/journal.pone.0046944 ;  PMID:  23056537
• Biochemical characterization of Arabidopsis clade F polygalacturonase shows a substrate preference toward oligogalacturonic acids.   DOI:  10.1016/j.jbiosc.2021.08.007 ;  PMID:  34690060

Sequences: