AT3G42950

Gene Details

Gene ID: AT3G42950
Gene Symbol: PGF6
Gene Name: Polygalacturonase Clade F 6
Description: Pectin lyase-like superfamily protein;(source:Araport11)
TAIR Accession: locus:2078531
Genome: Araport11_genome_release
Species: Arabidopsis thaliana

Functional Descriptions

PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)

GO:0009734 — acts upstream of or within — auxin-activated signaling pathway
GO:0009059 — acts upstream of or within — macromolecule biosynthetic process
GO:0016070 — acts upstream of or within — RNA metabolic process
GO:0009507 — located in — chloroplast
GO:0005975 — involved in — carbohydrate metabolic process
GO:0004650 — enables — polygalacturonase activity

Functional Keywords

Literature and News

Gene Resources

Homologs

Sequences

cDNA Sequence

>AT3G42950.1
TTTTCCGGTTCAGGTTATTCTTTTTTCCGGAATGCGAAAAAAAGAATATCATTGTTTGCTCTCTCAATCTCAACAACAACACTTCTCTCACTCAATCGCTTTCTCTTTGAGACGTTTGTTTAGTTTCAACAAACAAATCAAAACACACAAAGTTTGTGTCTTCCCTTAAGATTCACTCAAATCTCGCAACACACACATTCAACAAATCCTGATTCATAACATCTCACCAAATCTCTCAAAAGATCTCCAAATCTAAAATGTTCTTCTTCTTCTTCTTCATCTGAATCCAAAACAACAATGGTGAGACGTTTCCTCTCTTCTCACAAATCTCTCATCACTGTTTTCTGGATCGCCACTTTCGCTTCCTTATTCATCTGGCAATTCGGCGGCGTTTCCACAAATCTCTACTCCGGTTTCTCCCTTTTCTGGTCGTCGTCTTCAACAACCACCACCGTCTTCTCCGGTGGATTCCCCAAGCTCAGACCTGTAGTTTTCAATCTAACAGACTTCGGTGCTGTCGGCGATGGTGTCACAATCAACACTGAAGCTTTCGAGAAAGCTATTTATAAGATCTCTAAGCTTGCTAAGAAAGGAGGTGGTCAACTTAATGTTCCTCCTGGTCGTTGGCTCACTGCTCCGTTTAATCTCACTAGTTATATGACTCTTTTCCTCTCTGAGAACGCTGAGATTCTTGCTCTTCAGGATGAAAAGTATTGGTCTTTGCTTCCTCCTTTACCTTCATATGGATATGGAAGAGAGCATCATGGACCTCGTTATGGAAGTTTCATTCATGGACAGAATCTTAGAGATGTTGTTGTTACAGGGAATAATGGTAGCATCAACGGGCAGGGACAAACGTGGTGGAAGAAGTATCGCCAAAAGCTGCTTAACCACACGAGAGGACCACTGGTGCAGATAATGTGGTCAAGTGACATTGTTTTTGCCAATATCACTTTGCGTGATTCTCCATTTTGGACGCTTCACCCATATGACTGCAAAAATGTCACAATCACCAATATGACCATTTTGGCGCCTGTGTTCGAAGCCCCAAACACTGATGGTATCGATCCGGATTCGTGTGAGGACATGTTAATCGAGAACTCTTACATCAGCGTTGGGGATGATGGAATCGCAATAAAGAGCGGTTGGGACCAGTATGGAACTACATATGGAAAACCTTCAAAGAACATACTCATCCGCAACCTCATCATCCGCTCCATGGTTAGCGCTGGTATATCAATAGGAAGTGAGATGTCTGGTGGTGTCTCGAATATCACAGTCGAGAATATTCTGATTTGGAGCTCCCGGCGTGGAGTTAGGATTAAAACCGCACCAGGACGAGGTGGGTATGTCCGGGATATAACATTCCGGAATGTCACATTGGATGAGTTGAGAGTTGGTATTGTCATTAAAACAGACTACAACGAGCACCCAGATGGTGGATTCAATCCCCAAGCCTTTCCGATACTCGAGAACATAAACTACACTGGGATATACGGTCAGGGAGTGCGTGTACCAGTGCGTATCCAAGGAAGCAAAGAGATTCCTGTTAAAAATGTAACCTTCAGGGACATGTCAGTGGGGATAACATACAAGAAAAAGCACATATTCCAGTGTGCGTACGTGGAGGGGCGTGTGATAGGCACCATCTTCCCAGCTCCGTGTGATAACCTTGATCGGTATGATGAGCAGGAACGGTTGGTGAAGCAATCTGATTCCCAGAATGCAACAGATATAGACTACGAGATCTGACCAACAAGAGACTGGGTTTGGCCTCTGCAACAAATTTGTTTCGTTGGATTTTGTACATATACAGAGGAATCTGGAAAGCAAAGGAAATTATCGGTCAGTCAGATTAAATTGTATTTGCACTCTTAAAGAGGAATTTTTCCATTGATCAGTTTATGTTATTGGGTTCTTCTCTATCTACCTTTGTTATACACACATAAATGGGAATGGTGAGATTCGAAAATTACTGCTTTTGCGGCAAGCTGAGATATTGTATCATAAGTTCAATTTCGTAAATAAAATGCAGTCTTCTACGGACACATGATTCTGCAATGACCTGACCAGTCTAGTAGAGAAACAGAAAGTAACCAAGTTGATCAGATGATGATTTGGTGTTGGAAATACAGAAAAAATGGAAGATATGTGAGATTTGTTGTTCTCAGAGTTAGATGAGTTTTAAGAGGGTGTGGATCATGCAGCTTAAAGCATCACCGGTGACTGTAACGGCTAGCAGCTCGACTCTCGGGACTTTTAAAGTGGGGACACTTGGACAAAGTCACACCTCCATGGACTGATTGTCAAAGCATCTGTAGTGGTTGCTCCTATGGTACTTCAATTTGGTCATTCTTTGTTAACCTTTAGTAGTTTGGTGGTTTTTGGTTATGTCGTATGGTCACCTACAGGGTTATTGCATTTGGAACTTTTAACTTCGAAACTACATGTATCCTATATCCAAATGCTTTATCACTTTGTACTGAAATGCGTTCATGTGAGGTTATTTTTACTCATTTCCGCTCTTTTGCACCTAAGATGTGTTGAAAGTGGAAATGAGCTAAATCTTTGTTCAGATTATTCAACCGAATTAAGAAAGATTGAC

CDS Sequence

>AT3G42950.1
ATGGTGAGACGTTTCCTCTCTTCTCACAAATCTCTCATCACTGTTTTCTGGATCGCCACTTTCGCTTCCTTATTCATCTGGCAATTCGGCGGCGTTTCCACAAATCTCTACTCCGGTTTCTCCCTTTTCTGGTCGTCGTCTTCAACAACCACCACCGTCTTCTCCGGTGGATTCCCCAAGCTCAGACCTGTAGTTTTCAATCTAACAGACTTCGGTGCTGTCGGCGATGGTGTCACAATCAACACTGAAGCTTTCGAGAAAGCTATTTATAAGATCTCTAAGCTTGCTAAGAAAGGAGGTGGTCAACTTAATGTTCCTCCTGGTCGTTGGCTCACTGCTCCGTTTAATCTCACTAGTTATATGACTCTTTTCCTCTCTGAGAACGCTGAGATTCTTGCTCTTCAGGATGAAAAGTATTGGTCTTTGCTTCCTCCTTTACCTTCATATGGATATGGAAGAGAGCATCATGGACCTCGTTATGGAAGTTTCATTCATGGACAGAATCTTAGAGATGTTGTTGTTACAGGGAATAATGGTAGCATCAACGGGCAGGGACAAACGTGGTGGAAGAAGTATCGCCAAAAGCTGCTTAACCACACGAGAGGACCACTGGTGCAGATAATGTGGTCAAGTGACATTGTTTTTGCCAATATCACTTTGCGTGATTCTCCATTTTGGACGCTTCACCCATATGACTGCAAAAATGTCACAATCACCAATATGACCATTTTGGCGCCTGTGTTCGAAGCCCCAAACACTGATGGTATCGATCCGGATTCGTGTGAGGACATGTTAATCGAGAACTCTTACATCAGCGTTGGGGATGATGGAATCGCAATAAAGAGCGGTTGGGACCAGTATGGAACTACATATGGAAAACCTTCAAAGAACATACTCATCCGCAACCTCATCATCCGCTCCATGGTTAGCGCTGGTATATCAATAGGAAGTGAGATGTCTGGTGGTGTCTCGAATATCACAGTCGAGAATATTCTGATTTGGAGCTCCCGGCGTGGAGTTAGGATTAAAACCGCACCAGGACGAGGTGGGTATGTCCGGGATATAACATTCCGGAATGTCACATTGGATGAGTTGAGAGTTGGTATTGTCATTAAAACAGACTACAACGAGCACCCAGATGGTGGATTCAATCCCCAAGCCTTTCCGATACTCGAGAACATAAACTACACTGGGATATACGGTCAGGGAGTGCGTGTACCAGTGCGTATCCAAGGAAGCAAAGAGATTCCTGTTAAAAATGTAACCTTCAGGGACATGTCAGTGGGGATAACATACAAGAAAAAGCACATATTCCAGTGTGCGTACGTGGAGGGGCGTGTGATAGGCACCATCTTCCCAGCTCCGTGTGATAACCTTGATCGGTATGATGAGCAGGAACGGTTGGTGAAGCAATCTGATTCCCAGAATGCAACAGATATAGACTACGAGATCTGA

Protein Sequence

>AT3G42950.1
MVRRFLSSHKSLITVFWIATFASLFIWQFGGVSTNLYSGFSLFWSSSSTTTTVFSGGFPKLRPVVFNLTDFGAVGDGVTINTEAFEKAIYKISKLAKKGGGQLNVPPGRWLTAPFNLTSYMTLFLSENAEILALQDEKYWSLLPPLPSYGYGREHHGPRYGSFIHGQNLRDVVVTGNNGSINGQGQTWWKKYRQKLLNHTRGPLVQIMWSSDIVFANITLRDSPFWTLHPYDCKNVTITNMTILAPVFEAPNTDGIDPDSCEDMLIENSYISVGDDGIAIKSGWDQYGTTYGKPSKNILIRNLIIRSMVSAGISIGSEMSGGVSNITVENILIWSSRRGVRIKTAPGRGGYVRDITFRNVTLDELRVGIVIKTDYNEHPDGGFNPQAFPILENINYTGIYGQGVRVPVRIQGSKEIPVKNVTFRDMSVGITYKKKHIFQCAYVEGRVIGTIFPAPCDNLDRYDEQERLVKQSDSQNATDIDYEI