Information report for AT3G29090
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- SALK_074820C — seedlings were more sensitive to salt stresses
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , flower
Literature and News
- Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana. DOI: 10.1007/s00425-006-0261-9 ; PMID: 16622707
- Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. DOI: 10.1104/pp.108.126979 ; PMID: 18805951
- Activity of an atypical Arabidopsis thaliana pectin methylesterase. DOI: 10.1007/s00425-008-0831-0 ; PMID: 18936961
- Arabidopsis PECTIN METHYLESTERASEs contribute to immunity against Pseudomonas syringae. DOI: 10.1104/pp.113.227637 ; PMID: 24367018
- The Roles of β-Oxidation and Cofactor Homeostasis in Peroxisome Distribution and Function in Arabidopsis thaliana. DOI: 10.1534/genetics.116.193169 ; PMID: 27605050
- Coordination of five class III peroxidase-encoding genes for early germination events of Arabidopsis thaliana. DOI: 10.1016/j.plantsci.2020.110565 ; PMID: 32771166
- Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana. DOI: 10.1007/s00425-006-0261-9 ; PMID: 16622707
Gene Resources
- UniProt: A0A178VK52
- EMBL: CACRSJ010000106, LR881468, LUHQ01000003
- AlphaFoldDB: A0A178VK52
- EnsemblPlants: AT3G29090.1
- Gramene: AT3G29090.1
- KEGG: ath:AT3G29090
- Orthologous matrix: WDRSENE
- ExpressionAtlas: AT3G29090
- InterPro: IPR000070, IPR011050, IPR012334
- PANTHER: PTHR31321, PTHR31321:SF12
- SUPFAM: SSF51126
- PROSITE: PS00503
- Gene3D: 2.160.20.10
- SWISS-MODEL: A0A178VK52
Homologs
- Brassica oleracea Bo1g134410, Bo5g039320
- Cucumis sativus CsGy3G026590
- Glycine max Glyma.16G014100, Glyma.07G046000, Glyma.01G137700
- Manihot esculenta MANES_04G151000
- Populus trichocarpa POPTR_001G162600v3, POPTR_001G162500v3, POPTR_015G127700v3
- Sesamum indicum SIN_1000147, SIN_1017539
- Solanum lycopersicum Solyc03g083870.3
- Solanum tuberosum PGSC0003DMG400018037
Sequences
cDNA Sequence
- >AT3G29090.1
ATCCTGATCACTAAATATTACAAAACTAAAGAACGTCACACAGATGGTGATCGAACAATACCGACACCTAAACCTCTGTACCACAATTCGACGCAATTCATCGTTACCCAAAAACCTCTGTTTCGATTCCTAGACACTCTCACTAGGGTTTTACAACTATGGCAACGACTCGAATGGTTAGGGTTTCGCAAGATGGTTCGGGAGATTACTGCTCTGTTCAAGACGCAATTGATTCGGTGCCTTTAGGTAACACTTGCAGAACTGTGATTCGTCTCTCACCTGGGATTTATCGGCAACCTGTGTATGTACCCAAGAGGAAGAATTTCATTACCTTCGCCGGAATCTCACCGGAGATCACGGTTTTGACTTGGAACAATACAGCTTCCAAGATTGAGCATCACCAGGCGTCTAGAGTCATTGGGACTGGTACGTTTGGTTGTGGTAGTGTTATTGTTGAAGGTGAAGATTTTATTGCAGAGAACATTACTTTTGAGAACTCTGCTCCTGAGGGATCAGGGCAAGCTGTGGCGATACGAGTCACTGCAGACCGTTGCGCCTTTTATAATTGTCGATTTCTCGGTTGGCAGGATACATTGTATTTACATCATGGGAAACAATATTTGAAAGACTGTTACATCGAGGGAAGTGTGGATTTCATATTTGGAAACAGTACCGCTCTCTTGGAACACTGCCATATCCACTGCAAATCTCAGGGGTTTATAACAGCACAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGATGTGTGATCACGGGTAATGGTCAGAGCGGGTATATGTATCTCGGAAGGCCATGGGGACCATTTGGGAGGGTAGTCCTTGCTTACACTTACATGGACGCGTGTATCAGAAATGTGGGTTGGCATAACTGGGGAAACGCAGAGAACGAGAGAAGTGCTTGCTTTTATGAGTATAGGTGCTTTGGTCCGGGTAGCTGTTCGTCTGAACGTGTTCCGTGGTCGAGAGAACTGATGGATGACGAAGCTGGACACTTTGTGCATCATAGTTTTGTAGATCCTGAACAGGACCGGCCTTGGTTGTGTCTAAGAATGGGTGTGAAAACACCATATTCGGCTTAGAGTACTGAAAAAAAATGTTGTAACTGCCATGGTGAGGCCTAGAATAACAAAGGATCATGAAGAACCTATTGTAAACAACCCTAGTATCAAACTTTGGATTATCTTTTGTCCAAGTCAATAAGTGCACTACAAAAGGATCTTCT
CDS Sequence
- >AT3G29090.1
ATGGCAACGACTCGAATGGTTAGGGTTTCGCAAGATGGTTCGGGAGATTACTGCTCTGTTCAAGACGCAATTGATTCGGTGCCTTTAGGTAACACTTGCAGAACTGTGATTCGTCTCTCACCTGGGATTTATCGGCAACCTGTGTATGTACCCAAGAGGAAGAATTTCATTACCTTCGCCGGAATCTCACCGGAGATCACGGTTTTGACTTGGAACAATACAGCTTCCAAGATTGAGCATCACCAGGCGTCTAGAGTCATTGGGACTGGTACGTTTGGTTGTGGTAGTGTTATTGTTGAAGGTGAAGATTTTATTGCAGAGAACATTACTTTTGAGAACTCTGCTCCTGAGGGATCAGGGCAAGCTGTGGCGATACGAGTCACTGCAGACCGTTGCGCCTTTTATAATTGTCGATTTCTCGGTTGGCAGGATACATTGTATTTACATCATGGGAAACAATATTTGAAAGACTGTTACATCGAGGGAAGTGTGGATTTCATATTTGGAAACAGTACCGCTCTCTTGGAACACTGCCATATCCACTGCAAATCTCAGGGGTTTATAACAGCACAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGATGTGTGATCACGGGTAATGGTCAGAGCGGGTATATGTATCTCGGAAGGCCATGGGGACCATTTGGGAGGGTAGTCCTTGCTTACACTTACATGGACGCGTGTATCAGAAATGTGGGTTGGCATAACTGGGGAAACGCAGAGAACGAGAGAAGTGCTTGCTTTTATGAGTATAGGTGCTTTGGTCCGGGTAGCTGTTCGTCTGAACGTGTTCCGTGGTCGAGAGAACTGATGGATGACGAAGCTGGACACTTTGTGCATCATAGTTTTGTAGATCCTGAACAGGACCGGCCTTGGTTGTGTCTAAGAATGGGTGTGAAAACACCATATTCGGCTTAG
Protein Sequence
- >AT3G29090.1
MATTRMVRVSQDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISPEITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKSSQESTGYVFLRCVITGNGQSGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFYEYRCFGPGSCSSERVPWSRELMDDEAGHFVHHSFVDPEQDRPWLCLRMGVKTPYSA