Information report for AT3G28920
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000014 — rosette leaf — hoja en roseta (Spanish, exact), ロゼット葉 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
Functional Keywords
- shoot axis apex , leaf lamina base , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , cauline leaf , rosette leaf , flower , stem
Literature and News
- The Arabidopsis zinc finger-homeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development. DOI: 10.1104/pp.105.070565 ; PMID: 16428600
- Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments. DOI: 10.1186/1471-2164-8-112 ; PMID: 17474978
- Nuclear import and DNA binding of the ZHD5 transcription factor is modulated by a competitive peptide inhibitor in Arabidopsis. DOI: 10.1074/jbc.M110.167692 ; PMID: 21059647
- Enhanced Y1H assays for Arabidopsis. DOI: 10.1038/nmeth.1750 ; PMID: 22037706
- Promoter-based integration in plant defense regulation. DOI: 10.1104/pp.114.248716 ; PMID: 25352272
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. DOI: 10.1105/tpc.15.00744 ; PMID: 27650334
- Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. DOI: 10.1105/tpc.17.00805 ; PMID: 29317470
- Transcriptional regulation of nitrogen-associated metabolism and growth. DOI: 10.1038/s41586-018-0656-3 ; PMID: 30356219
- A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. DOI: 10.1105/tpc.19.00562 ; PMID: 31806676
- Role of a ZF-HD Transcription Factor in miR157-Mediated Feed-Forward Regulatory Module That Determines Plant Architecture in Arabidopsis. DOI: 10.3390/ijms23158665 ; PMID: 35955798
Gene Resources
- UniProt: A0A654FCQ4
- EMBL: CACRSJ010000106
- AlphaFoldDB: A0A654FCQ4
- EnsemblPlants: AT3G28920.1
- Gramene: AT3G28920.1
- KEGG: ath:AT3G28920
- Orthologous matrix: HTPGSRK
- ExpressionAtlas: AT3G28920
- InterPro: IPR006455, IPR006456, IPR009057
- PANTHER: PTHR31948, PTHR31948:SF137
- SUPFAM: SSF46689
- PROSITE: PS51523
- Gene3D: 1.10.10.60
- SWISS-MODEL: A0A654FCQ4
Homologs
- Brassica napus GSBRNA2T00142868001, GSBRNA2T00144536001, GSBRNA2T00009837001, GSBRNA2T00109603001
- Brassica oleracea XP_013599446.1, XP_013607214.1
- Brassica rapa XP_009151829.1, XP_009111615.1, XP_009139922.1
- Raphanus raphanistrum RrC12344_p1
Sequences
cDNA Sequence
- >AT3G28920.1
ATTTATTATTCACATTTATTAACATTTTTATATCTCTCCCTATTAAATTATTTTATTCTCTCTTAGCAACATTCATCAACCAGAGCAGATTCACTATCATCATCTTATAACACATCTTCTTCCTCTAAAGTTTATTTTCTTAAACTTATTACAAAAAACATGATCTTCAAAAGTTGATTTAATCTCTTTTTATCCATCTTCTTCTTCATTTCTCAATATCAAACTTTTCTTTTTTTGTAAGCTTAACATAAACCCTAATATTTTCTTGATTTTTTTCAAGAAAATAAAAACATAAAGATGCTTGAAGTTAGATCAATGGATATGACTCCAAAATCACCAGAACCCGAATCCGAAACTCCGACCCGGATCCAACCAGCTAAACCAATCTCTTTCAGTAACGGAATCATCAAACGCCACCACCACCACCACCACAACAACAACAAAGTCACTTACAAAGAATGTCTCAAGAACCACGCGGCGGCGATTGGTGGTCACGCGCTTGACGGTTGCGGCGAATTTATGCCGTCTCCTTCGTCAACACCTTCCGATCCAACTTCTCTCAAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAAACTGACGATTCCTCCGCCGTTCCACCACCGTCTCTTCTTCCATCTTCAACAACAACCGCCGCAATTGAGTATCAGCCTCATCACCGTCATCATCCTCCTCCTCCGCTAGCTCCTCCGTTACCACGTAGTCCTAATTCATCTTCTCCGCCGCCTATCTCTTCCTCCTACATGCTTTTAGCTCTCTCCGGTAATAATAAAACCGCACCGTTCTCAGATCTAAACTTCGCCGCCGCGGCTAACCATCTCTCCGCCACGCCTGGCTCGAGGAAGCGATTCAGGACGAAGTTTAGCTCAAATCAGAAAGAGAAGATGCATGAATTCGCCGATCGAATCGGTTGGAAGATTCAGAAACGTGACGAAGACGAAGTTCGTGATTTTTGCCGTGAGATCGGAGTTGATAAAGGTGTTCTCAAAGTTTGGATGCATAATAACAAAAACTCCTTCAAATTCTCCGGCGGAGGAGCAACCACCGTGCAGAGAAACGATAACGGTATCGGCGGCGAGAACAGTAACGATGATGGAGTTCGCGGTTTAGCTAACGACGGTGACGGTGGTGGTGGGAGATTTGAGAGTGATAGTGGAGGAGCTGATGGTGGCGGAAACGTAAACGCCTCGTCGTCTTCGTCGTGAAGAAGAAAACATCATGTCGTTTTGCAGGGAAAGAGTTATAATAATGGAAGCTTAAGCTTTGTTTTTAGCTTTAGATCATAGAGAGTAAGCACTGGTATTATTATCGTTAATACGTTTTATTAATATTAATTAAACTCTTTTAGCTCTTTTTTAATTTTCCAATTTTATTATAATTTCATTACCACGACGTTGTCTTATTTTTCCATTTAAAGTAAGTTTATATCAACAAATTGGATTATGTTATAATAAGTCAATTTTGGTTAATTTAATGAACCCTAATGAGGAAAATTTTA
CDS Sequence
- >AT3G28920.1
ATGCTTGAAGTTAGATCAATGGATATGACTCCAAAATCACCAGAACCCGAATCCGAAACTCCGACCCGGATCCAACCAGCTAAACCAATCTCTTTCAGTAACGGAATCATCAAACGCCACCACCACCACCACCACAACAACAACAAAGTCACTTACAAAGAATGTCTCAAGAACCACGCGGCGGCGATTGGTGGTCACGCGCTTGACGGTTGCGGCGAATTTATGCCGTCTCCTTCGTCAACACCTTCCGATCCAACTTCTCTCAAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAAACTGACGATTCCTCCGCCGTTCCACCACCGTCTCTTCTTCCATCTTCAACAACAACCGCCGCAATTGAGTATCAGCCTCATCACCGTCATCATCCTCCTCCTCCGCTAGCTCCTCCGTTACCACGTAGTCCTAATTCATCTTCTCCGCCGCCTATCTCTTCCTCCTACATGCTTTTAGCTCTCTCCGGTAATAATAAAACCGCACCGTTCTCAGATCTAAACTTCGCCGCCGCGGCTAACCATCTCTCCGCCACGCCTGGCTCGAGGAAGCGATTCAGGACGAAGTTTAGCTCAAATCAGAAAGAGAAGATGCATGAATTCGCCGATCGAATCGGTTGGAAGATTCAGAAACGTGACGAAGACGAAGTTCGTGATTTTTGCCGTGAGATCGGAGTTGATAAAGGTGTTCTCAAAGTTTGGATGCATAATAACAAAAACTCCTTCAAATTCTCCGGCGGAGGAGCAACCACCGTGCAGAGAAACGATAACGGTATCGGCGGCGAGAACAGTAACGATGATGGAGTTCGCGGTTTAGCTAACGACGGTGACGGTGGTGGTGGGAGATTTGAGAGTGATAGTGGAGGAGCTGATGGTGGCGGAAACGTAAACGCCTCGTCGTCTTCGTCGTGA
Protein Sequence
- >AT3G28920.1
MLEVRSMDMTPKSPEPESETPTRIQPAKPISFSNGIIKRHHHHHHNNNKVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTPSDPTSLKCAACGCHRNFHRRETDDSSAVPPPSLLPSSTTTAAIEYQPHHRHHPPPPLAPPLPRSPNSSSPPPISSSYMLLALSGNNKTAPFSDLNFAAAANHLSATPGSRKRFRTKFSSNQKEKMHEFADRIGWKIQKRDEDEVRDFCREIGVDKGVLKVWMHNNKNSFKFSGGGATTVQRNDNGIGGENSNDDGVRGLANDGDGGGGRFESDSGGADGGGNVNASSSSS