Information report for AT3G28500
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
Literature and News
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- Overexpression of spermidine synthase enhances tolerance to multiple environmental stresses and up-regulates the expression of various stress-regulated genes in transgenic Arabidopsis thaliana. DOI: 10.1093/pcp/pch083 ; PMID: 15215506
- Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. DOI: 10.1104/pp.104.053637 ; PMID: 15734919
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. DOI: 10.1104/pp.106.079707 ; PMID: 16679424
- A putative CCAAT-binding transcription factor is a regulator of flowering timing in Arabidopsis. DOI: 10.1104/pp.107.102079 ; PMID: 17631525
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. DOI: 10.1021/pr8000173 ; PMID: 18433157
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. DOI: 10.1104/pp.109.152413 ; PMID: 20118269
- Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. DOI: 10.1104/pp.113.223511 ; PMID: 23858430
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. DOI: 10.1186/s12870-018-1255-z ; PMID: 29490615
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. DOI: 10.1104/pp.104.053637 ; PMID: 15734919
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. DOI: 10.1021/pr8000173 ; PMID: 18433157
Gene Resources
- UniProt: A0A5S9XGI0
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A5S9XGI0
- EnsemblPlants: AT3G28500.1
- Gramene: AT3G28500.1
- KEGG: ath:AT3G28500
- Orthologous matrix: NIMCFIC
- ExpressionAtlas: AT3G28500
- InterPro: IPR027534, IPR038716, IPR044076
- PANTHER: PTHR21141, PTHR21141:SF84
- Gene3D: 1.10.10.1410
- OrthoDB: A0A5S9XGI0
- SWISS-MODEL: A0A5S9XGI0
- Conserved Domain Database: cd05833
Sequences
cDNA Sequence
- >AT3G28500.1
AAAATTTCCGGCTCTGTGTCGTGTACCGTACGTACGGAACAAAACCCTAAAATCTCCTCTCACATTATGGGACAGAGACAACATTTGACCCTTAAAATTCACAAACTATAGATCTCTCCAGTCCCTTTCGCAAACCCTAGCAGTCGAAAGATCGAAATCGAAAACCCCTAAAACGATGAAGGTGATTGCTGCATTTCTCCTCGCGAAACTCGGTGGAAACGAGAATCCAACCTCAAATGATCTGAAGAAGATCTTGGAATCTGTTGGTGCTGAAATCGATGAAACGAAGATAGATCTGTTGTTTTCTCTCATCAAGGATCATGATGTGACGGAGCTTATTGCTGCTGGGAGAGAAAAGATGTCTGCTTTGTCTTCTGGTGGTCCAGCTGTTGCTATGGTGGCTGGAGGTGGTGGTGGTGGTGCTGCTTCGGCGGCTGAGCCGGTTGCTGAATCTAAGAAGAAGGTTGAAGAAGTGAAGGATGAATCTTCTGACGATGCAGGCATGATGGGTCTCTTTGATTGATCATTTGGTTAGAAGTTTCGTTTAAAGGTCAAGACTTTATGTTTCTGATGTTGGTTTTATTGATGGATCTTTGTTTAATGTTGAGACTTGTGTTTCTGATGTTGGTTTAATGATCTTTGGTGGTGATGACTCTATGTTGGGTTTTACTTGTGATTTGAGAATTGTGGATGATGATGATGATTTTAGGATTTGAGATTGATAGATCATAGCGAGTTTGTTTATGTGATTTGATGCTTTTGGATCGCTGAGTAGTATTATCATGATTAGTAGTTAAAGATGGATATATTAAGAGTAGCCAGTGAGTCAAAATGTGAAAAGGGTTTGTTTTGTTAGTGGCTAAGAACACATTGGAGCAAATCTTTCATTTGAGTTTATGTGTATAGTGAGTTTGTTTATGTAATTTTGTATGGTTTTTCAATATGGGTTTG
CDS Sequence
- >AT3G28500.1
ATGAAGGTGATTGCTGCATTTCTCCTCGCGAAACTCGGTGGAAACGAGAATCCAACCTCAAATGATCTGAAGAAGATCTTGGAATCTGTTGGTGCTGAAATCGATGAAACGAAGATAGATCTGTTGTTTTCTCTCATCAAGGATCATGATGTGACGGAGCTTATTGCTGCTGGGAGAGAAAAGATGTCTGCTTTGTCTTCTGGTGGTCCAGCTGTTGCTATGGTGGCTGGAGGTGGTGGTGGTGGTGCTGCTTCGGCGGCTGAGCCGGTTGCTGAATCTAAGAAGAAGGTTGAAGAAGTGAAGGATGAATCTTCTGACGATGCAGGCATGATGGGTCTCTTTGATTGA
Protein Sequence
- >AT3G28500.1
MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMSALSSGGPAVAMVAGGGGGGAASAAEPVAESKKKVEEVKDESSDDAGMMGLFD