Information report for AT3G28470
Gene Details
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Functional Descriptions
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0009071 — anther wall tapetum — pollen sac tapetum (exact), portion of anther wall tapetal tissue (exact), tapete (Spanish, exact), 葯壁タペート組織 (Japanese, exact), Poaceae tapetum (narrow), Zea tapetum (narrow)
- PO:0020047 — microsporocyte — microsporocito (Spanish, exact), 小胞子母細胞 (Japanese, exact), PMC (related), microspore mother cell (related), pollen mother cell (related), Poaceae microsporocyte (narrow), Zea microsporocyte (narrow)
- tdf1 — Male sterile due to defects in anther development. Earliest defect seen at developmental stage 6. Tapetal cells do not develop into secretory tapetal cells. Excessive tapetal cell division.Microspores also developmentally defective.
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The R2R3-MYB gene family in Arabidopsis thaliana. DOI: 10.1016/s1369-5266(00)00199-0 ; PMID: 11597504
- The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. DOI: 10.1007/s11103-005-2910-y ; PMID: 16463103
- Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor. DOI: 10.1242/dev.02463 ; PMID: 16831835
- Differential gene expression in Arabidopsis wild-type and mutant anthers: insights into anther cell differentiation and regulatory networks. DOI: 10.1111/j.1365-313X.2007.03217.x ; PMID: 17666023
- ROXY1 and ROXY2, two Arabidopsis glutaredoxin genes, are required for anther development. DOI: 10.1111/j.1365-313X.2007.03375.x ; PMID: 18036205
- A genetic pathway for tapetum development and function in Arabidopsis. DOI: 10.1111/j.1744-7909.2011.01078.x ; PMID: 21957980
- DYT1 directly regulates the expression of TDF1 for tapetum development and pollen wall formation in Arabidopsis. DOI: 10.1111/tpj.12694 ; PMID: 25284309
- Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana. DOI: 10.1111/nph.14790 ; PMID: 28940573
- Analyses of functional conservation and divergence reveal requirement of bHLH010/089/091 for pollen development at elevated temperature in Arabidopsis. DOI: 10.1016/j.jgg.2020.09.001 ; PMID: 33393464
- IMPERFECTIVE EXINE FORMATION (IEF) is required for exine formation and male fertility in Arabidopsis. DOI: 10.1007/s11103-020-01114-8 ; PMID: 33481140
- Iron insufficiency in floral buds impairs pollen development by disrupting tapetum function. DOI: 10.1111/tpj.15438 ; PMID: 34310779
- ATBS1-INTERACTING FACTOR 2 Negatively Modulates Pollen Production and Seed Formation in Arabidopsis. DOI: 10.3389/fpls.2021.704958 ; PMID: 34386030
- The full-length Auxin Response Factor 8 isoform ARF8.1 controls pollen cell wall formation and directly regulates TDF1, AMS and MS188 expression. DOI: 10.1111/tpj.16089 ; PMID: 36597651
- Ascorbic acid-mediated reactive oxygen species homeostasis modulates the switch from tapetal cell division to cell differentiation in Arabidopsis. DOI: 10.1093/plcell/koad037 ; PMID: 36781400
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: A0A654FBL4
- EMBL: CACRSJ010000106
- AlphaFoldDB: A0A654FBL4
- EnsemblPlants: AT3G28470.1
- Gramene: AT3G28470.1
- KEGG: ath:AT3G28470
- Orthologous matrix: VANHGTG
- ExpressionAtlas: AT3G28470
- InterPro: IPR001005, IPR009057, IPR015495
- PANTHER: PTHR47994, PTHR47994:SF5
- SUPFAM: SSF46689
- PROSITE: PS50090, PS51294
- Gene3D: 1.10.10.60
- SWISS-MODEL: A0A654FBL4
- Conserved Domain Database: cd00167
Homologs
- Brassica napus GSBRNA2T00144573001, GSBRNA2T00142818001
- Brassica oleracea XP_013596923.1
- Brassica rapa XP_009151869.1
- Manihot esculenta Manes.15G175900.1.p, Manes.17G023900.1.p
- Raphanus raphanistrum RrC309_p2
- Vitis vinifera GSVIVT01032564001
Sequences
cDNA Sequence
- >AT3G28470.1
ATGGGAAGACCTCCTTGTTGTGACAAGTCCAATGTCAAGAAAGGTCTCTGGACCGAGGAAGAAGACGCTAAGATCCTTGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGCTTGATCCCCAAAAAAGCAGGTCTGAATCGATGTGGAAAGAGCTGTAGACTAAGATGGACTAATTACTTAAGACCTGACCTTAAACATGACAGCTTCTCTACCCAAGAAGAAGAGCTTATCATTGAGTGTCATAGAGCCATTGGCAGCAGGTGGTCTTCCATTGCACGAAAGCTTCCAGGAAGAACGGATAATGATGTGAAGAATCACTGGAACACAAAGCTGAAGAAGAAGCTGATGAAAATGGGGATAGACCCGGTGACTCATAAACCGGTTTCTCAACTCCTTGCAGAATTCAGAAACATTAGCGGCCATGGAAATGCATCCTTCAAAACAGAACCATCTAACAACTCTATACTCACACAATCCAACTCAGCTTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATTACACCAACTCTCCAATGATGTTTACAAATTCCTCTGAGTACCAAACTACTCCATTTCATTTCTATAGCCATCCAAATCATCTGCTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCTTCTACTAGTATCACTCAGCCAAACCAAGTACCTCAAACACCGGTTACTAACTTCTACTGGAGCGATTTCCTTCTCTCGGACCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACTAGCGACCTCACTTTTACGCAGAACGAACATCATTTCAACATCGAAGCCGAATACATCTCTCAAAACATCGATTCAAAGGCCTCGGGAACATGTCATTCCGCGAGTTCCTTCGTTGACGAAATACTAGATAAAGACCAAGAGATGTTGTCACAGTTTCCTCAACTCTTGAATGATTTCGATTATTAGATCCCTTCTTTTCCCTATTGTTGTTACTTCTCTTGTAACTGGTTTATGATTTTCAAGAACTATGTTTTTTC
CDS Sequence
- >AT3G28470.1
ATGGGAAGACCTCCTTGTTGTGACAAGTCCAATGTCAAGAAAGGTCTCTGGACCGAGGAAGAAGACGCTAAGATCCTTGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGCTTGATCCCCAAAAAAGCAGGTCTGAATCGATGTGGAAAGAGCTGTAGACTAAGATGGACTAATTACTTAAGACCTGACCTTAAACATGACAGCTTCTCTACCCAAGAAGAAGAGCTTATCATTGAGTGTCATAGAGCCATTGGCAGCAGGTGGTCTTCCATTGCACGAAAGCTTCCAGGAAGAACGGATAATGATGTGAAGAATCACTGGAACACAAAGCTGAAGAAGAAGCTGATGAAAATGGGGATAGACCCGGTGACTCATAAACCGGTTTCTCAACTCCTTGCAGAATTCAGAAACATTAGCGGCCATGGAAATGCATCCTTCAAAACAGAACCATCTAACAACTCTATACTCACACAATCCAACTCAGCTTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATTACACCAACTCTCCAATGATGTTTACAAATTCCTCTGAGTACCAAACTACTCCATTTCATTTCTATAGCCATCCAAATCATCTGCTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCTTCTACTAGTATCACTCAGCCAAACCAAGTACCTCAAACACCGGTTACTAACTTCTACTGGAGCGATTTCCTTCTCTCGGACCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACTAGCGACCTCACTTTTACGCAGAACGAACATCATTTCAACATCGAAGCCGAATACATCTCTCAAAACATCGATTCAAAGGCCTCGGGAACATGTCATTCCGCGAGTTCCTTCGTTGACGAAATACTAGATAAAGACCAAGAGATGTTGTCACAGTTTCCTCAACTCTTGAATGATTTCGATTATTAG
Protein Sequence
- >AT3G28470.1
MGRPPCCDKSNVKKGLWTEEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFSTQEEELIIECHRAIGSRWSSIARKLPGRTDNDVKNHWNTKLKKKLMKMGIDPVTHKPVSQLLAEFRNISGHGNASFKTEPSNNSILTQSNSAWEMMRNTTTNHESYYTNSPMMFTNSSEYQTTPFHFYSHPNHLLNGTTSSCSSSSSSTSITQPNQVPQTPVTNFYWSDFLLSDPVPQVVGSSATSDLTFTQNEHHFNIEAEYISQNIDSKASGTCHSASSFVDEILDKDQEMLSQFPQLLNDFDY