Information report for AT3G28340
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- SALK_058676C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:increased,cold:no change,oxidative stress:no change,osmotic stress:decreased,salt stress:decreased,ABA:decreased,hypoxia:no change.
Functional Keywords
- shoot axis apex , leaf lamina base , root , plant embryo , vascular leaf , stamen , sepal , flower , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen tube cell , pollen
Literature and News
- The GATA family of transcription factors in Arabidopsis and rice. DOI: 10.1104/pp.103.037788 ; PMID: 15084732
- The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis. DOI: 10.1104/pp.103.036749 ; PMID: 15181213
- A global survey of gene regulation during cold acclimation in Arabidopsis thaliana. DOI: 10.1371/journal.pgen.0010026 ; PMID: 16121258
- Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase. DOI: 10.1073/pnas.0600120103 ; PMID: 16540543
- Galactinol and raffinose constitute a novel function to protect plants from oxidative damage. DOI: 10.1104/pp.108.122465 ; PMID: 18502973
- Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. DOI: 10.1104/pp.108.126979 ; PMID: 18805951
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Molecular analysis of a family of Arabidopsis genes related to galacturonosyltransferases. DOI: 10.1104/pp.110.163220 ; PMID: 21300919
Gene Resources
- UniProt: W8QNM3
- EMBL: KJ138808
- AlphaFoldDB: W8QNM3
- EnsemblPlants: AT3G28340.1
- Gramene: AT3G28340.1
- KEGG: ath:AT3G28340
- Orthologous matrix: YQNGLEC
- ExpressionAtlas: AT3G28340
- InterPro: IPR002495, IPR029044, IPR050748
- PANTHER: PTHR13778, PTHR13778:SF57
- SUPFAM: SSF53448
- Gene3D: 3.90.550.10
- SWISS-MODEL: W8QNM3
Homologs
- Actinidia chinensis Achn244501
- Oryza sativa OsGATL5, OsGATL2, OsGAUT4, OsPDT1, OsGAUT21, LOC_Os09g36180
- Prunus avium Pav_sc0000412.1_g540.1.mk
- Sesamum indicum SIN_1014576
Sequences
cDNA Sequence
- >AT3G28340.1
TTTTAAAAGAGCGTAAATTGACTCTCTTCTTTACAAAACCGCGTTTCCTTTTTTGTCTTGGTCTTCTTCGTCGACCTTTCTCTTTTTCTTTCTCTTGTCCATAAATTCCAGAAACTTTTTTTCTAGACACTTTAGAAACACCAAACCTTAAAAAGAGCTCTGCTTTGAGATCTTAGCCATTAAGTTCTCTTGATGATGTCTGGTTCAAGATTAGCCTCTAGACTAATAATAATCTTCTCAATAATCTCCACATCTTTCTTCACCGTTGAATCGATTCGACTATTCCCTGATTCATTCGACGATGCATCTTCAGATTTAATGGAAGCTCCAGCATATCAAAACGGTCTTGATTGCTCTGTTTTAGCCAAAAACAGACTCTTGTTAGCTTGTGATCCATCAGCTGTTCATATAGCTATGACTCTAGATCCAGCTTACTTGCGTGGCACGGTATCTGCAGTACATTCCATCCTCAAACACACTTCTTGCCCTGAAAACATCTTCTTCCACTTCATTGCTTCGGGTACAAGTCAGGGTTCCCTCGCCAAGACCCTATCCTCTGTTTTTCCTTCTTTGAGTTTCAAAGTCTATACCTTTGAAGAAACCACGGTCAAGAATCTAATCTCTTCTTCTATAAGACAAGCTCTTGATAGTCCTTTGAATTACGCAAGAAGCTACTTATCCGAGATTCTTTCTTCGTGTGTTAGTCGAGTGATTTATCTCGATTCGGATGTGATTGTGGTCGATGATATTCAGAAACTATGGAAGATTTCTTTATCCGGGTCAAGAACAATCGGTGCACCAGAGTATTGCCACGCAAATTTCACCAAATACTTCACAGATAGTTTCTGGTCCGATCAAAAACTCTCGAGTGTCTTCGATTCCAAGACTCCTTGTTATTTCAACACAGGAGTGATGGTTATCGATTTAGAGCGATGGAGAGAAGGAGATTACACGAGAAAGATCGAAAACTGGATGAAGATTCAGAAAGAAGATAAGAGAATCTACGAATTGGGTTCTTTACCACCGTTTCTTCTAGTGTTTGGTGGTGATATTGAAGCTATTGATCATCAATGGAACCAACACGGTCTCGGTGGAGACAACATTGTGAGTAGTTGTAGATCTTTGCATCCTGGTCCGGTTAGTTTGATACATTGGAGTGGTAAAGGGAAGCCATGGGTTAGGCTTGATGATGGTAAGCCTTGTCCAATTGATTATCTTTGGGCTCCTTATGATCTTCACAAGTCACAGAGGCAGTATCTTCAATACAATCAAGAGTTAGAAATTCTTTGATTTATTCATTTTTTGGGGTTTTGGTATGGTAAATTTTGTGAACTCATTACATGGATTCTATGTTTTTTGTTATTCCTTTTTTAATGTACATACAACATAAATACATCGAGGATTTTGTTCAAGATATTGATTATTGATCTTCATTCGGCTTAAGTATTCTTTGCCTCATGAATCATGAGTTGTGTGAATAAAAATAAGCTTATATTATATGTGTTCTATTCCAAATCACATACCTATATTTAAGAAAATAGCAAACAGATTTTTATTTATCTAAATACATTTTCATATATATGCTATCAACCTAGTTAACTCTAAATAAGTATAATTGGATCATGTATTTTGTTTTGTTTCATTAAAAATATGTTTACCAAAATACAAAACTAGTTAGTAAGAGGAGAGATCTGCGGATACTTGAGGGGTTTTTTCATTAAAAATGCCAAGTAGAAACT
CDS Sequence
- >AT3G28340.1
ATGATGTCTGGTTCAAGATTAGCCTCTAGACTAATAATAATCTTCTCAATAATCTCCACATCTTTCTTCACCGTTGAATCGATTCGACTATTCCCTGATTCATTCGACGATGCATCTTCAGATTTAATGGAAGCTCCAGCATATCAAAACGGTCTTGATTGCTCTGTTTTAGCCAAAAACAGACTCTTGTTAGCTTGTGATCCATCAGCTGTTCATATAGCTATGACTCTAGATCCAGCTTACTTGCGTGGCACGGTATCTGCAGTACATTCCATCCTCAAACACACTTCTTGCCCTGAAAACATCTTCTTCCACTTCATTGCTTCGGGTACAAGTCAGGGTTCCCTCGCCAAGACCCTATCCTCTGTTTTTCCTTCTTTGAGTTTCAAAGTCTATACCTTTGAAGAAACCACGGTCAAGAATCTAATCTCTTCTTCTATAAGACAAGCTCTTGATAGTCCTTTGAATTACGCAAGAAGCTACTTATCCGAGATTCTTTCTTCGTGTGTTAGTCGAGTGATTTATCTCGATTCGGATGTGATTGTGGTCGATGATATTCAGAAACTATGGAAGATTTCTTTATCCGGGTCAAGAACAATCGGTGCACCAGAGTATTGCCACGCAAATTTCACCAAATACTTCACAGATAGTTTCTGGTCCGATCAAAAACTCTCGAGTGTCTTCGATTCCAAGACTCCTTGTTATTTCAACACAGGAGTGATGGTTATCGATTTAGAGCGATGGAGAGAAGGAGATTACACGAGAAAGATCGAAAACTGGATGAAGATTCAGAAAGAAGATAAGAGAATCTACGAATTGGGTTCTTTACCACCGTTTCTTCTAGTGTTTGGTGGTGATATTGAAGCTATTGATCATCAATGGAACCAACACGGTCTCGGTGGAGACAACATTGTGAGTAGTTGTAGATCTTTGCATCCTGGTCCGGTTAGTTTGATACATTGGAGTGGTAAAGGGAAGCCATGGGTTAGGCTTGATGATGGTAAGCCTTGTCCAATTGATTATCTTTGGGCTCCTTATGATCTTCACAAGTCACAGAGGCAGTATCTTCAATACAATCAAGAGTTAGAAATTCTTTGA
Protein Sequence
- >AT3G28340.1
MMSGSRLASRLIIIFSIISTSFFTVESIRLFPDSFDDASSDLMEAPAYQNGLDCSVLAKNRLLLACDPSAVHIAMTLDPAYLRGTVSAVHSILKHTSCPENIFFHFIASGTSQGSLAKTLSSVFPSLSFKVYTFEETTVKNLISSSIRQALDSPLNYARSYLSEILSSCVSRVIYLDSDVIVVDDIQKLWKISLSGSRTIGAPEYCHANFTKYFTDSFWSDQKLSSVFDSKTPCYFNTGVMVIDLERWREGDYTRKIENWMKIQKEDKRIYELGSLPPFLLVFGGDIEAIDHQWNQHGLGGDNIVSSCRSLHPGPVSLIHWSGKGKPWVRLDDGKPCPIDYLWAPYDLHKSQRQYLQYNQELEIL