Information report for AT3G27690
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Functional Keywords
Literature and News
- A guide to the Lhc genes and their relatives in Arabidopsis/IT>. DOI: 10.1016/s1360-1385(99)01419-3 ; PMID: 10366881
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- EGY1 encodes a membrane-associated and ATP-independent metalloprotease that is required for chloroplast development. DOI: 10.1111/j.1365-313X.2004.02308.x ; PMID: 15659096
- Genome-wide gene expression analysis reveals a critical role for CRYPTOCHROME1 in the response of Arabidopsis to high irradiance. DOI: 10.1104/pp.107.098293 ; PMID: 17478635
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Unique and overlapping expression patterns among members of photosynthesis-associated nuclear gene families in Arabidopsis. DOI: 10.1104/pp.108.126946 ; PMID: 18820083
- Effects of chlorophyllide a oxygenase overexpression on light acclimation in Arabidopsis thaliana. DOI: 10.1007/s11120-005-6807-z ; PMID: 16170635
- The photosystem II light-harvesting protein Lhcb3 affects the macrostructure of photosystem II and the rate of state transitions in Arabidopsis. DOI: 10.1105/tpc.108.064006 ; PMID: 19880802
- The PPH1 phosphatase is specifically involved in LHCII dephosphorylation and state transitions in Arabidopsis. DOI: 10.1073/pnas.0913810107 ; PMID: 20176943
- Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components. DOI: 10.1186/1471-2229-12-6 ; PMID: 22236032
- The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus. DOI: 10.1111/j.1365-313X.2011.04865.x ; PMID: 22211401
- Redox-mediated mechanisms regulate DNA binding activity of the G-group of basic region leucine zipper (bZIP) transcription factors in Arabidopsis. DOI: 10.1074/jbc.M112.361394 ; PMID: 22718771
- AtFtsH heterocomplex-mediated degradation of apoproteins of the major light harvesting complex of photosystem II (LHCII) in response to stresses. DOI: 10.1016/j.jplph.2013.03.008 ; PMID: 23598180
- Very rapid phosphorylation kinetics suggest a unique role for Lhcb2 during state transitions in Arabidopsis. DOI: 10.1111/tpj.12297 ; PMID: 23888908
- Change in fast Chl a fluorescence transients, 2 dimensional protein profile and pigment protein interactions during state transitions in Arabidopsis thaliana. DOI: 10.1016/j.jphotobiol.2013.07.028 ; PMID: 23995216
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- The specific localizations of phosphorylated Lhcb1 and Lhcb2 isoforms reveal the role of Lhcb2 in the formation of the PSI-LHCII supercomplex in Arabidopsis during state transitions. DOI: 10.1016/j.bbabio.2015.09.005 ; PMID: 26392145
- Phosphorylation of the Light-Harvesting Complex II Isoform Lhcb2 Is Central to State Transitions. DOI: 10.1104/pp.15.01498 ; PMID: 26438789
- Excitation energy transfer and charge separation are affected in Arabidopsis thaliana mutants lacking light-harvesting chlorophyll a/b binding protein Lhcb3. DOI: 10.1016/j.jphotobiol.2015.11.002 ; PMID: 26562806
- The Lack of Lutein Accelerates the Extent of Light-induced Bleaching of Photosynthetic Pigments in Thylakoid Membranes of Arabidopsis thaliana. DOI: 10.1111/php.12576 ; PMID: 26888623
- Identification and Roles of Photosystem II Assembly, Stability, and Repair Factors in Arabidopsis. DOI: 10.3389/fpls.2016.00168 ; PMID: 26909098
- An established Arabidopsis thaliana var. Landsberg erecta cell suspension culture accumulates chlorophyll and exhibits a stay-green phenotype in response to high external sucrose concentrations. DOI: 10.1016/j.jplph.2016.05.008 ; PMID: 27302005
- Pyrimidine Salvage: Physiological Functions and Interaction with Chloroplast Biogenesis. DOI: 10.1104/pp.19.00329 ; PMID: 31101721
- The Kinase STATE TRANSITION 8 Phosphorylates Light Harvesting Complex II and Contributes to Light Acclimation in Arabidopsis thaliana. DOI: 10.3389/fpls.2019.01156 ; PMID: 31608094
- Comparison of State Transitions of the Photosynthetic Antennae in Arabidopsis and Barley Plants upon Illumination with Light of Various Intensity. DOI: 10.1134/S0006297919090098 ; PMID: 31693466
- The role of carbonic anhydrase α-CA4 in the adaptive reactions of photosynthetic apparatus: the study with α-CA4 knockout plants. DOI: 10.1007/s00709-019-01456-1 ; PMID: 31784823
- Consequences of the reduction of the Photosystem II antenna size on the light acclimation capacity of Arabidopsis thaliana. DOI: 10.1111/pce.13701 ; PMID: 31834625
- OXS2 is Required for Salt Tolerance Mainly through Associating with Salt Inducible Genes, CA1 and Araport11, in Arabidopsis. DOI: 10.1038/s41598-019-56456-1 ; PMID: 31889067
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Phosphorylation-induced lateral rearrangements of thylakoid protein complexes upon light acclimation. DOI: 10.1002/pld3.39 ; PMID: 31245706
- Comparative proteomics of thylakoids from Arabidopsis grown in laboratory and field conditions. DOI: 10.1002/pld3.355 ; PMID: 34712896
- Chloroplast Acetyltransferase GNAT2 is Involved in the Organization and Dynamics of Thylakoid Structure. DOI: 10.1093/pcp/pcac096 ; PMID: 35792507
- Shade represses photosynthetic genes by disrupting the DNA binding of GOLDEN2-LIKE1. DOI: 10.1093/plphys/kiad029 ; PMID: 36702576
- Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. DOI: 10.1074/mcp.M300030-MCP200 ; PMID: 12766230
- In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. DOI: 10.1105/tpc.017814 ; PMID: 14729914
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
Gene Resources
- UniProt: A0A178VHN7
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VHN7
- EnsemblPlants: AT3G27690.1
- Gramene: AT3G27690.1
- KEGG: ath:AT3G27690
- ExpressionAtlas: AT3G27690
- InterPro: IPR001344, IPR022796
- PANTHER: PTHR21649
- SUPFAM: SSF103511
- Gene3D: 1.10.3460.10
- OrthoDB: A0A178VHN7
- SWISS-MODEL: A0A178VHN7
Homologs
- Brachypodium distachyon Bradi3g42627.5.p, Bradi3g42627.4.p, Bradi3g42627.3.p
- Glycine max GmLHCa2
- Oryza sativa LHCB;LHCPII, OsCAB1R, CAB2R;OsLhcp, Lhca4;DYE1, CP29;OsLhcb4, ASCAB9-A;CP26, CP24
- Saccharum spontaneum Sspon.02G0039210-2C
Sequences
cDNA Sequence
- >AT3G27690.1
CAACAACATCTCATTCTCACTTACTTCTTTTCTTTTTTTGTGTTCTTGTTTAGAAGAAGCAATGGCCACTTCAGCAATCCAACACTCTTCTTTCGCTGGCCAAACGACCCTAAAGCCATCCAACGATCTCCTCCGCAAAATCGGAGCCTCCAATGGCGGTGGCCGCATCATCATGCGTCGTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAGGACCATTTTCCGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGTTGGGACACCGCTGGTCTCTCAGCCGATCCAGAAACATTCGCAAAGAATCGTGAGCTCGAAGTGATCCACAGTAGATGGGCAATGTTGGGAGCTTTAGGCTGCACCTTCCCTGAAATTCTCTCAAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAAATCTTCTCAGAAGGAGGGCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAGCTATATGGGCGTGTCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGTGGTCCTCTTGGGGAAGGGCTTGACCCGCTTTACCCGGGCGGGGCCTTCGACCCGTTGAACTTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTGAAAGTGAAGGAGCTTAAAAACGGTCGTCTTGCTATGTTCTCAATGTTTGGATTCTTTGTCCAAGCCATAGTTACCGGTAAAGGTCCGATCGAAAATCTGTTCGATCACATTGCAGACCCTGTGGCTAACAATGCTTGGGCTTACGCCACCAACTTCGTCCCCGGAAAATAGAGTTTGATCGGATAATTTATGTAAATTATATCTTTTAAACATTTATCAATGCATTAAAGTTATCCCTATATTTGATACATCGGTTCCATTTTTTTTTTTTTTGCTTTGGTTAGAATTCTCGTTTGCTAGCAACTTGGCAGTACGTTTAAAAGGCTAAGACATTCGAAACATAAGACACTGAATTACAAGGCAGTTATAAACGTGCTTAAGTTTCCAAATTCAATAGTTGAGAGACATTGAATTACAAATGTTTGTTTATCTACAACTGTCCCTATGCTAAAACTGAATGAAAAAACAATGTAGTTGCA - >AT3G27690.2
CAACAACATCTCATTCTCACTTACTTCTTTTCTTTTTTTGTGTTCTTGTTTAGAAGAAGCAATGGCCACTTCAGCAATCCAACACTCTTCTTTCGCTGGCCAAACGACCCTAAAGCCATCCAACGATCTCCTCCGCAAAATCGGAGCCTCCAATGGCGGTGGCCGCATCATCATGCGTCGTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAGGACCATTTTCCGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGTTGGGACACCGCTGGTCTCTCAGCCGATCCAGAAACATTCGCAAAGAATCGTGAGCTCGAAGTGATCCACAGTAGATGGGCAATGTTGGGAGCTTTAGGCTGCACCTTCCCTGAAATTCTCTCAAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAAATCTTCTCAGAAGGAGGGCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAGCTATATGGGCGTGTCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGTGGTCCTCTTGGGGAAGGGCTTGACCCGCTTTACCCGGGCGGGGCCTTCGACCCGTTGAACTTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTGAAAGTGAAGGAGCTTAAAAACGGTCGTCTTGCTATGTTCTCAATGTTTGGATTCTTTGTCCAAGCCATAGTTACCGGTAAAGGTCCGATCGAAAATCTGTTCGATCACATTGCAGACCCTGTGGCTAACAATGCTTGGGCTTACGCCACCAACTTCGTCCCCGGAAAATAGAGTTTGATCGGATAATTTATGTAAATTATATCTTTTAAACATTTATCAATGCATTAAAGTTATCCCTATATTTGATACATCGGTTCCATTTTTTTTTTTTTTGCTTTGGTTAGAATTCTCGTTTGCTAGCAACTTGGCAGTACGTTTAAAAGGCTAAGACATTCGAAACATAAGACACTGAATTACAAGGCAGTTATAAACGTGCTTAAGTTTCCAAATTCAATAGTTGAGAGACATTGAATTACAAATGTTTGTTTATCTACAACTGTCCCTATGCTAAAACTGAATGAAAAAACAATGTAGTTGCA
CDS Sequence
- >AT3G27690.1
ATGGCCACTTCAGCAATCCAACACTCTTCTTTCGCTGGCCAAACGACCCTAAAGCCATCCAACGATCTCCTCCGCAAAATCGGAGCCTCCAATGGCGGTGGCCGCATCATCATGCGTCGTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAGGACCATTTTCCGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGTTGGGACACCGCTGGTCTCTCAGCCGATCCAGAAACATTCGCAAAGAATCGTGAGCTCGAAGTGATCCACAGTAGATGGGCAATGTTGGGAGCTTTAGGCTGCACCTTCCCTGAAATTCTCTCAAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAAATCTTCTCAGAAGGAGGGCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAGCTATATGGGCGTGTCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGTGGTCCTCTTGGGGAAGGGCTTGACCCGCTTTACCCGGGCGGGGCCTTCGACCCGTTGAACTTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTGAAAGTGAAGGAGCTTAAAAACGGTCGTCTTGCTATGTTCTCAATGTTTGGATTCTTTGTCCAAGCCATAGTTACCGGTAAAGGTCCGATCGAAAATCTGTTCGATCACATTGCAGACCCTGTGGCTAACAATGCTTGGGCTTACGCCACCAACTTCGTCCCCGGAAAATAG - >AT3G27690.2
ATGGCCACTTCAGCAATCCAACACTCTTCTTTCGCTGGCCAAACGACCCTAAAGCCATCCAACGATCTCCTCCGCAAAATCGGAGCCTCCAATGGCGGTGGCCGCATCATCATGCGTCGTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAGGACCATTTTCCGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGTTGGGACACCGCTGGTCTCTCAGCCGATCCAGAAACATTCGCAAAGAATCGTGAGCTCGAAGTGATCCACAGTAGATGGGCAATGTTGGGAGCTTTAGGCTGCACCTTCCCTGAAATTCTCTCAAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAAATCTTCTCAGAAGGAGGGCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAGCTATATGGGCGTGTCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGTGGTCCTCTTGGGGAAGGGCTTGACCCGCTTTACCCGGGCGGGGCCTTCGACCCGTTGAACTTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTGAAAGTGAAGGAGCTTAAAAACGGTCGTCTTGCTATGTTCTCAATGTTTGGATTCTTTGTCCAAGCCATAGTTACCGGTAAAGGTCCGATCGAAAATCTGTTCGATCACATTGCAGACCCTGTGGCTAACAATGCTTGGGCTTACGCCACCAACTTCGTCCCCGGAAAATAG
Protein Sequence
- >AT3G27690.1
MATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANNAWAYATNFVPGK - >AT3G27690.2
MATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANNAWAYATNFVPGK