Gene Details:

• Gene ID: AT3G27360
• Gene Symbol: H3.1, HTR3
• Gene Name: histone 3.1
• Description: Histone superfamily protein;(source:Araport11)
• TAIR Accession:
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G27360.1

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0009049  — inflorescence — inflorescencia (Spanish, exact), 花序 (Japanese, exact), Triticeae spike (narrow)

Germplasm Phenotype:

• N578768  — No visible phenotype.

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  root ,  vascular leaf ,  flower ,  inflorescence

Literature:

• Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: interlacing of biosynthetic pathways provides response specificity.   DOI:  10.1046/j.1365-313x.2003.01657.x ;  PMID:  12609038
• Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome.   DOI:  10.1105/tpc.010009 ;  PMID:  12837951
• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3.   DOI:  10.1111/j.1365-313X.2005.02554.x ;  PMID:  16262706
• A transcriptome-based characterization of habituation in plant tissue culture.   DOI:  10.1104/pp.105.076059 ;  PMID:  16489130
• BOLITA, an Arabidopsis AP2/ERF-like transcription factor that affects cell expansion and proliferation/differentiation pathways.   DOI:  10.1007/s11103-006-9059-1 ;  PMID:  17096212
• Zygotic resetting of the HISTONE 3 variant repertoire participates in epigenetic reprogramming in Arabidopsis.   DOI:  10.1016/j.cub.2010.11.012 ;  PMID:  21093266
• Differential association of Arabidopsis telomeres and centromeres with histone H3 variants.   DOI:  10.1038/srep01202 ;  PMID:  23383372
• Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication.   DOI:  10.1126/science.1248357 ;  PMID:  24626927
• The H3 chaperone function of NASP is conserved in Arabidopsis.   DOI:  10.1111/tpj.13263 ;  PMID:  27402088
• Genome-wide identification, evolutionary, and expression analyses of histone H3 variants in plants.   DOI:  10.1155/2015/341598 ;  PMID:  25815311
• Molecular basis for the methylation specificity of ATXR5 for histone H3.   DOI:  10.1093/nar/gkx224 ;  PMID:  28383693
• Gene modification by fast-track recombineering for cellular localization and isolation of components of plant protein complexes.   DOI:  10.1111/tpj.14450 ;  PMID:  31276249
• A unified phylogeny-based nomenclature for histone variants.   DOI:  10.1186/1756-8935-5-7 ;  PMID:  22650316
• H3.1 Eviction Marks Female Germline Precursors in Arabidopsis.   DOI:  10.3390/plants9101322 ;  PMID:  33036297
• Disruption of NAP1 genes in Arabidopsis thaliana suppresses the fas1 mutant phenotype, enhances genome stability and changes chromatin compaction.   DOI:  10.1111/tpj.15145 ;  PMID:  33368779
• H3.1K27me1 maintains transcriptional silencing and genome stability by preventing GCN5-mediated histone acetylation.   DOI:  10.1093/plcell/koaa027 ;  PMID:  33793815
• The Histone Chaperone HIRA Is a Positive Regulator of Seed Germination.   DOI:  10.3390/ijms22084031 ;  PMID:  33919775
• Epigenetic features drastically impact CRISPR-Cas9 efficacy in plants.   DOI:  10.1093/plphys/kiac285 ;  PMID:  35689624
• Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis.   DOI:  10.1038/s41467-022-34648-0 ;  PMID:  36379930
• Mitotic inheritance of genetic and epigenetic information via the histone H3.1 variant.   DOI:  10.1016/j.pbi.2023.102401 ;  PMID:  37302254
• Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3.   DOI:  10.1111/j.1365-313X.2005.02554.x ;  PMID:  16262706

Sequences: