Information report for AT3G27010
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005515 — enables — protein binding
- GO:0009653 — acts upstream of or within — anatomical structure morphogenesis
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:1900056 — acts upstream of or within — negative regulation of leaf senescence
- GO:0043565 — enables — sequence-specific DNA binding
- GO:0003677 — enables — DNA binding
- GO:0005634 — is active in — nucleus
- GO:0005634 — located in — nucleus
- GO:0008361 — acts upstream of or within — regulation of cell size
- GO:0000987 — enables — cis-regulatory region sequence-specific DNA binding
Functional Keywords
- root , plant embryo , vascular leaf , flower
Literature and News
- The TCP domain: a motif found in proteins regulating plant growth and development. DOI: 10.1046/j.1365-313x.1999.00444.x ; PMID: 10363373
- PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene. DOI: 10.1105/tpc.9.9.1607 ; PMID: 9338963
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- DNA binding and dimerization specificity and potential targets for the TCP protein family. DOI: 10.1046/j.1365-313x.2002.01294.x ; PMID: 12000681
- Internal telomeric repeats and 'TCP domain' protein-binding sites co-operate to regulate gene expression in Arabidopsis thaliana cycling cells. DOI: 10.1046/j.1365-313x.2003.01682.x ; PMID: 12631321
- Arabidopsis TCP20 links regulation of growth and cell division control pathways. DOI: 10.1073/pnas.0504039102 ; PMID: 16123132
- The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. DOI: 10.1104/pp.105.068171 ; PMID: 16258011
- Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. DOI: 10.1111/j.1365-313X.2005.02584.x ; PMID: 16367961
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA-binding properties due to the presence of a threonine residue at position 15 of the TCP domain. DOI: 10.1042/BJ20101019 ; PMID: 21241251
- Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically. DOI: 10.1104/pp.112.200303 ; PMID: 22718775
- Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors. DOI: 10.1007/s11103-014-0180-2 ; PMID: 24549883
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- TCP transcription factors are critical for the coordinated regulation of isochorismate synthase 1 expression in Arabidopsis thaliana. DOI: 10.1111/tpj.12803 ; PMID: 25702611
- Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. DOI: 10.1073/pnas.1614852113 ; PMID: 27708161
- LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. DOI: 10.1038/ncomms13181 ; PMID: 27734958
- Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. DOI: 10.3389/fpls.2017.01697 ; PMID: 29033968
- MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. DOI: 10.1111/tpj.13757 ; PMID: 29086441
- Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. DOI: 10.1104/pp.17.00823 ; PMID: 29133375
- Specific TCP transcription factors interact with and stabilize PRR2 within different nuclear sub-domains. DOI: 10.1016/j.plantsci.2019.110197 ; PMID: 31481190
- A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. DOI: 10.1105/tpc.19.00562 ; PMID: 31806676
- Functional Antagonism of WRI1 and TCP20 Modulates GH3.3 Expression to Maintain Auxin Homeostasis in Roots. DOI: 10.3390/plants11030454 ; PMID: 35161435
- An Expanding Portfolio. DOI: 10.3389/fpls.2022.825341 ; PMID: 35273626
- Modulating Expression Levels of TCP Transcription Factors by Mentha x piperita Volatiles-An Allelopathic Tool to Influence Leaf Growth? DOI: 10.3390/plants11223078 ; PMID: 36432807
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: A0A178VAT1
- EMBL: LUHQ01000003
- AlphaFoldDB: A0A178VAT1
- EnsemblPlants: AT3G27010.1, AT3G27010.2
- Gramene: AT3G27010.1, AT3G27010.2
- KEGG: ath:AT3G27010
- Orthologous matrix: GSSRTNW
- ExpressionAtlas: AT3G27010
- InterPro: IPR005333, IPR017887
- PANTHER: PTHR31072, PTHR31072:SF4
- PROSITE: PS51369
- SWISS-MODEL: A0A178VAT1
Homologs
- Brassica napus GSBRNA2T00078098001, GSBRNA2T00006850001, GSBRNA2T00109688001, GSBRNA2T00009909001
- Brassica oleracea XP_013593496.1, XP_013607477.1
- Brassica rapa XP_009151998.1, XP_009111551.1
- Juglans regia WALNUT_00019923-RA
- Lotus japonicus Lj1g3v3847330.1
- Manihot esculenta Manes.11G083000.1.p
- Raphanus raphanistrum RrC700_p7
Sequences
cDNA Sequence
- >AT3G27010.1
AATTCTACATCGGGATCTTACTGGGTTTTTTTTTAAACATTAAATTCGTAAATTCCCAAAGAAAAAAAAAAAAACTCGATACCTTTTGTTTTACAAAGTCGTCACAATTCTGAAACCCTTAATTGAATCCAAGAGAATTTTTGATTAAATTAAGTCTCTGGACCCTGAAGTCCCCACACAAGCAAGCTTCGATGGATCCCAAGAACCTAAATCGTCACCAAGTACCAAATTTCTTGAACCCACCACCACCACCGCGAAATCAGGGTTTGGTAGATGATGATGCTGCTTCTGCTGTTGTTTCCGACGAGAATCGCAAACCAACAACTGAGATTAAAGATTTCCAGATCGTGGTCTCTGCTTCCGACAAAGAACCAAACAAGAAGAGTCAGAATCAGAACCAGCTTGGTCCTAAGAGAAGCTCTAACAAAGACAGACACACTAAAGTCGAAGGTAGAGGTCGACGAATTCGGATGCCTGCTCTTTGTGCTGCTAGGATTTTTCAATTGACTAGAGAATTGGGTCATAAATCTGATGGTGAAACTATCCAGTGGCTGCTTCAACAAGCTGAGCCATCGATTATTGCAGCTACTGGTTCAGGAACTATACCGGCCTCTGCTTTAGCTTCTTCAGCTGCAACCTCTAACCATCATCAAGGTGGGTCTCTTACTGCTGGTTTAATGATCAGTCATGACTTAGATGGTGGGTCTAGTAGTAGTGGTAGACCATTAAATTGGGGGATTGGTGGCGGTGAAGGAGTTTCTAGGTCAAGTTTACCAACTGGGTTATGGCCAAATGTAGCTGGGTTTGGTTCTGGTGTGCCAACCACTGGTTTAATGAGTGAAGGAGCTGGTTATAGAATTGGGTTTCCTGGTTTTGATTTTCCTGGTGTTGGTCATATGAGTTTTGCATCTATTTTGGGTGGGAATCATAATCAGATGCCTGGACTTGAGTTAGGCTTGTCTCAAGAAGGGAATGTTGGTGTTTTGAATCCTCAGTCTTTTACTCAGATTTATCAACAGATGGGTCAGGCTCAGGCTCAAGCTCAAGGTAGGGTTCTTCACCATATGCATCATAACCATGAAGAACATCAGCAAGAGAGTGGTGAGAAAGATGATTCTCAAGGCTCAGGTCGTTAAAAGGATTGGGTTTTTTTTTGTATCTTCTGGATTTGAAAAAGCTTTTGGCTTTTGTTTTGTGATAATATTGTTGTAATTTGTACCACCATGGAGAAGAAAAAGAAAAGGTTATATACTGAGTGAGAGTGATAATCTATACTTATTGAAACCTCTGCAAAAACACAAGGTGGAGTTTGTTGAATACACACAGCCAGAGATTTTTTTGTTTGGAGTCTTTAAGTTGCAGAGAGGCTTGTTTTTACTTGTTCTGAGTTTTGTTGCTTTTGAATATCAAGAAACCGGCTTTTTTCAGATAGTACAACAATGGTAATGTATACTTGTCTTCCATCAC - >AT3G27010.2
AATTCTACATCGGGATCTTACTGGGTTTTTTTTTAAACATTAAATTCGTAAATTCCCAAAGAAAAAAAAAAAAACTCGATACCTTTTGTTTTACAAAGTCGTCACAATTCTGAAACCCTTAATTGAATCCAAGAGAATTTTTGATTAAATTAAGTCTCTGGACCCTGAAGTCCCCACACAAGCAAGCTTCGATGGATCCCAAGAACCTAAATCGTCACCAAGTACCAAATTTCTTGAACCCACCACCACCACCGCGAAATCAGGGTTTGGTAGATGATGATGCTGCTTCTGCTGTTGTTTCCGACGAGAATCGCAAACCAACAACTGAGATTAAAGATTTCCAGATCGTGGTCTCTGCTTCCGACAAAGAACCAAACAAGAAGAGTCAGAATCAGAACCAGCTTGGTCCTAAGAGAAGCTCTAACAAAGACAGACACACTAAAGTCGAAGGTAGAGGTCGACGAATTCGGATGCCTGCTCTTTGTGCTGCTAGGATTTTTCAATTGACTAGAGAATTGGGTCATAAATCTGATGGTGAAACTATCCAGTGGCTGCTTCAACAAGCTGAGCCATCGATTATTGCAGCTACTGGTTCAGGAACTATACCGGCCTCTGCTTTAGCTTCTTCAGCTGCAACCTCTAACCATCATCAAGGTGGGTCTCTTACTGCTGGTTTAATGATCAGTCATGACTTAGATGGTGGGTCTAGTAGTAGTGGTAGACCATTAAATTGGGGGATTGGTGGCGGTGAAGGAGTTTCTAGGTCAAGTTTACCAACTGGGTTATGGCCAAATGTAGCTGGGTTTGGTTCTGGTGTGCCAACCACTGGTTTAATGAGTGAAGGAGCTGGTTATAGAATTGGGTTTCCTGGTTTTGATTTTCCTGGTGTTGGTCATATGAGTTTTGCATCTATTTTGGGTGGGAATCATAATCAGATGCCTGGACTTGAGTTAGGCTTGTCTCAAGAAGGGAATGTTGGTGTTTTGAATCCTCAGTCTTTTACTCAGATTTATCAACAGATGGGTCAGGCTCAGGCTCAAGCTCAAGGTAGGGTTCTTCACCATATGCATCATAACCATGAAGAACATCAGCAAGAGAGTGGTGAGAAAGATGATTCTCAAGGCTCAGGTCGTTAAAAGGATTGGGTTTTTTTTTGTATCTTCTGGATTTGAAAAAGCTTTTGGCTTTTGTTTTGTGATAATATTGTTGTAATTTGTACCACCATGGAGAAGAAAAAGAAAAGGTTATATACTGAGTGAGAGTGATAATCTATACTTATTGAAACCTCTGCAAAAACACAAGGTGGAGTTTGTTGAATACACACAGCCAGAGATTTTTTTGTTTGGAGTCTTTAAGTTGCAGAGAGGCTTGTTTTTACTTGTTCTGAGTTTTGTTGCTTTTGAATATCAAGAAACCGGCTTTTTTCAGATAGTACAACAATGGTAATGTATACTTGTCTTCCATCAC
CDS Sequence
- >AT3G27010.1
ATGGATCCCAAGAACCTAAATCGTCACCAAGTACCAAATTTCTTGAACCCACCACCACCACCGCGAAATCAGGGTTTGGTAGATGATGATGCTGCTTCTGCTGTTGTTTCCGACGAGAATCGCAAACCAACAACTGAGATTAAAGATTTCCAGATCGTGGTCTCTGCTTCCGACAAAGAACCAAACAAGAAGAGTCAGAATCAGAACCAGCTTGGTCCTAAGAGAAGCTCTAACAAAGACAGACACACTAAAGTCGAAGGTAGAGGTCGACGAATTCGGATGCCTGCTCTTTGTGCTGCTAGGATTTTTCAATTGACTAGAGAATTGGGTCATAAATCTGATGGTGAAACTATCCAGTGGCTGCTTCAACAAGCTGAGCCATCGATTATTGCAGCTACTGGTTCAGGAACTATACCGGCCTCTGCTTTAGCTTCTTCAGCTGCAACCTCTAACCATCATCAAGGTGGGTCTCTTACTGCTGGTTTAATGATCAGTCATGACTTAGATGGTGGGTCTAGTAGTAGTGGTAGACCATTAAATTGGGGGATTGGTGGCGGTGAAGGAGTTTCTAGGTCAAGTTTACCAACTGGGTTATGGCCAAATGTAGCTGGGTTTGGTTCTGGTGTGCCAACCACTGGTTTAATGAGTGAAGGAGCTGGTTATAGAATTGGGTTTCCTGGTTTTGATTTTCCTGGTGTTGGTCATATGAGTTTTGCATCTATTTTGGGTGGGAATCATAATCAGATGCCTGGACTTGAGTTAGGCTTGTCTCAAGAAGGGAATGTTGGTGTTTTGAATCCTCAGTCTTTTACTCAGATTTATCAACAGATGGGTCAGGCTCAGGCTCAAGCTCAAGGTAGGGTTCTTCACCATATGCATCATAACCATGAAGAACATCAGCAAGAGAGTGGTGAGAAAGATGATTCTCAAGGCTCAGGTCGTTAA - >AT3G27010.2
ATGGATCCCAAGAACCTAAATCGTCACCAAGTACCAAATTTCTTGAACCCACCACCACCACCGCGAAATCAGGGTTTGGTAGATGATGATGCTGCTTCTGCTGTTGTTTCCGACGAGAATCGCAAACCAACAACTGAGATTAAAGATTTCCAGATCGTGGTCTCTGCTTCCGACAAAGAACCAAACAAGAAGAGTCAGAATCAGAACCAGCTTGGTCCTAAGAGAAGCTCTAACAAAGACAGACACACTAAAGTCGAAGGTAGAGGTCGACGAATTCGGATGCCTGCTCTTTGTGCTGCTAGGATTTTTCAATTGACTAGAGAATTGGGTCATAAATCTGATGGTGAAACTATCCAGTGGCTGCTTCAACAAGCTGAGCCATCGATTATTGCAGCTACTGGTTCAGGAACTATACCGGCCTCTGCTTTAGCTTCTTCAGCTGCAACCTCTAACCATCATCAAGGTGGGTCTCTTACTGCTGGTTTAATGATCAGTCATGACTTAGATGGTGGGTCTAGTAGTAGTGGTAGACCATTAAATTGGGGGATTGGTGGCGGTGAAGGAGTTTCTAGGTCAAGTTTACCAACTGGGTTATGGCCAAATGTAGCTGGGTTTGGTTCTGGTGTGCCAACCACTGGTTTAATGAGTGAAGGAGCTGGTTATAGAATTGGGTTTCCTGGTTTTGATTTTCCTGGTGTTGGTCATATGAGTTTTGCATCTATTTTGGGTGGGAATCATAATCAGATGCCTGGACTTGAGTTAGGCTTGTCTCAAGAAGGGAATGTTGGTGTTTTGAATCCTCAGTCTTTTACTCAGATTTATCAACAGATGGGTCAGGCTCAGGCTCAAGCTCAAGGTAGGGTTCTTCACCATATGCATCATAACCATGAAGAACATCAGCAAGAGAGTGGTGAGAAAGATGATTCTCAAGGCTCAGGTCGTTAA
Protein Sequence
- >AT3G27010.1
MDPKNLNRHQVPNFLNPPPPPRNQGLVDDDAASAVVSDENRKPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPTGLWPNVAGFGSGVPTTGLMSEGAGYRIGFPGFDFPGVGHMSFASILGGNHNQMPGLELGLSQEGNVGVLNPQSFTQIYQQMGQAQAQAQGRVLHHMHHNHEEHQQESGEKDDSQGSGR - >AT3G27010.2
MDPKNLNRHQVPNFLNPPPPPRNQGLVDDDAASAVVSDENRKPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPTGLWPNVAGFGSGVPTTGLMSEGAGYRIGFPGFDFPGVGHMSFASILGGNHNQMPGLELGLSQEGNVGVLNPQSFTQIYQQMGQAQAQAQGRVLHHMHHNHEEHQQESGEKDDSQGSGR