Gene Details:
- Gene ID: AT3G26900
- Gene Symbol: ATSKL1, SKL1
- Gene Name: Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase-like 1
- Description: shikimate kinase like 1;(source:Araport11)
- TAIR Accession: locus:2088469
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Gene Ontology:
- GO:0009507 — located in — chloroplast
- GO:0005829 — located in — cytosol
- GO:0009570 — located in — chloroplast stroma
- GO:0009507 — is active in — chloroplast
- GO:0009658 — acts upstream of or within — chloroplast organization
- GO:0010027 — acts upstream of or within — thylakoid membrane organization
Function-related keywords:
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen
Literature:
- The in-vitro synthesized tomato shikimate kinase precursor is enzymatically active and is imported and processed to the mature enzyme by chloroplasts. DOI: NA ; PMID: 1338949
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Evolutionary diversification of plant shikimate kinase gene duplicates. DOI: 10.1371/journal.pgen.1000292 ; PMID: 19057671
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Embryonic Photosynthesis Affects Post-Germination Plant Growth. DOI: 10.1104/pp.20.00043 ; PMID: 32060052
- The in-vitro synthesized tomato shikimate kinase precursor is enzymatically active and is imported and processed to the mature enzyme by chloroplasts. DOI: NA ; PMID: 1338949
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
Sequences:
cDNA Sequence
- >AT3G26900.2
ATATGATAAAAGAAATTAATACGTGGCGGATATCTTGGGACTAGAGGAAGGAGGGAGAGAAGGAGCTTAAGAGAGCATTCGTCGTCGTCAATGGAGATCTTCTCTGCGTCTGCTTCTCTAACTTTAACTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTACTCTCTGCAAGCCGTTGCTGTCTTCTTCTTCTACTAGACTCATTTCTTGTCACAGTCGTATAGCTCCGTCTCGGTCTCTCGCAGATCAATCCGCCTCTACTGGGATCAGTGTTGTTGATTCGGATCCCATTGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAACTGAAAGGAGCTTCCATATTTCTGGTTGGAATTAATAACTCTATTAAAACGAACACGGGGAAGCTTTTGGCTGAGGCATTACGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGGTGGAAATGTGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAAGAATCAGAGACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGGTGCGGTCCAAAGCTTGAGAAATCTTGCACTTCTTAGACACGGGATCTCCATATGGATCGATGTTCCTCTGGATATCACTGCTAAAGGGGATGATGATTCATTCCACTCAGAACCTTCCCCTGAGTTGTTTGACACACTAAAAGCGAGTTACGAGAAATCAAGAAAGGGTTACGAAACAGCAGATGTATCCATTTCCCTTGAAAAAATAGCTACAAAGCTAGAATTTGAAGACTTGGAAGCAGTAACTTCTGAAGACATTGCTTTGGAGATTCTGAAAGAAATAGAGAAGTTGACAAGAGTGAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAGGTCGATTTTACACTCTCATTCATATCGACATGTGTTATACAAAGAGGCTCAGCTTTGGGTGGTGGAGGAGAAGGATCATCAATCTGTCGCCTTCTCTCACGTGAGATCGATAACGTGCTGGGCTTAATATATTGATCCACTAGTATGTGGGCCTTGATTATGGCCCACTAATGGATAAGAGTGAGAAATAGTGAAAGGGCACAAAATAGCTCATCCCAATTCCCAACAGCTTTCTTGTCTCTCCCGTCTTTTAAAAACAAAACATAATTAATTCTCCATTTTTTCTCTGTTCGTTTGAGTTGTTTTTTTCTTACGGTAAAAAGACAATAAAAACGGTAAGGTTTATTTTTGTTTATAGA - >AT3G26900.1
ATATGATAAAAGAAATTAATACGTGGCGGATATCTTGGGACTAGAGGAAGGAGGGAGAGAAGGAGCTTAAGAGAGCATTCGTCGTCGTCAATGGAGATCTTCTCTGCGTCTGCTTCTCTAACTTTAACTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTACTCTCTGCAAGCCGTTGCTGTCTTCTTCTTCTACTAGACTCATTTCTTGTCACAGTCGTATAGCTCCGTCTCGGTCTCTCGCAGATCAATCCGCCTCTACTGGGATCAGTGTTGTTGATTCGGATCCCATTGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAACTGAAAGGAGCTTCCATATTTCTGGTTGGAATTAATAACTCTATTAAAACGAACACGGGGAAGCTTTTGGCTGAGGCATTACGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGGTGGAAATGTGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAAGAATCAGAGACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGGTGCGGTCCAAAGCTTGAGAAATCTTGCACTTCTTAGACACGGGATCTCCATATGGATCGATGTTCCTCTGGATATCACTGCTAAAGGGGATGATGATTCATTCCACTCAGAACCTTCCCCTGAGTTGTTTGACACACTAAAAGCGAGTTACGAGAAATCAAGAAAGGGTTACGAAACAGCAGATGTATCCATTTCCCTTGAAAAAATAGCTACAAAGCTAGAATTTGAAGACTTGGAAGCAGTAACTTCTGAAGACATTGCTTTGGAGATTCTGAAAGAAATAGAGAAGTTGACAAGAGTGAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAGGTCGATTTTACACTCTCATTCATATCGACATGTGTTATACAAAGAGGCTCAGCTTTGGGTGGTGGAGGAGAAGGATCATCAATCTGTCGCCTTCTCTCACGTGAGATCGATAACGTGCTGGGCTTAATATATTGATCCACTAGTATGTGGGCCTTGATTATGGCCCACTAATGGATAAGAGTGAGAAATAGTGAAAGGGCACAAAATAGCTCATCCCAATTCCCAACAGCTTTCTTGTCTCTCCCGTCTTTTAAAAACAAAACATAATTAATTCTCCATTTTTTCTCTGTTCGTTTGAGTTGTTTTTTTCTTACGGTAAAAAGACAATAAAAACGGTAAGGTTTATTTTTGTTTATAGA - >AT3G26900.3
ATATGATAAAAGAAATTAATACGTGGCGGATATCTTGGGACTAGAGGAAGGAGGGAGAGAAGGAGCTTAAGAGAGCATTCGTCGTCGTCAATGGAGATCTTCTCTGCGTCTGCTTCTCTAACTTTAACTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTACTCTCTGCAAGCCGTTGCTGTCTTCTTCTTCTACTAGACTCATTTCTTGTCACAGTCGTATAGCTCCGTCTCGGTCTCTCGCAGATCAATCCGCCTCTACTGGGATCAGTGTTGTTGATTCGGATCCCATTGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAACTGAAAGGAGCTTCCATATTTCTGGTTGGAATTAATAACTCTATTAAAACGAACACGGGGAAGCTTTTGGCTGAGGCATTACGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGGTGGAAATGTGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAAGAATCAGAGACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGGTGCGGTCCAAAGCTTGAGAAATCTTGCACTTCTTAGACACGGGATCTCCATATGGATCGATGTTCCTCTGGATATCACTGCTAAAGGGGATGATGATTCATTCCACTCAGAACCTTCCCCTGAGTTGTTTGACACACTAAAAGCGAGTTACGAGAAATCAAGAAAGGGTTACGAAACAGCAGATGTATCCATTTCCCTTGAAAAAATAGCTACAAAGCTAGAATTTGAAGACTTGGAAGCAGTAACTTCTGAAGACATTGCTTTGGAGATTCTGAAAGAAATAGAGAAGTTGACAAGAGTGAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAGGTCGATTTTACACTCTCATTCATATCGACATGTGTTATACAAAGAGGCTCAGCTTTGGGTGGTGGAGGAGAAGGATCATCAATCTGTCGCCTTCTCTCACGTGAGATCGATAACGTGCTGGGCTTAATATATTGATCCACTAGTATGTGGGCCTTGATTATGGCCCACTAATGGATAAGAGTGAGAAATAGTGAAAGGGCACAAAATAGCTCATCCCAATTCCCAACAGCTTTCTTGTCTCTCCCGTCTTTTAAAAACAAAACATAATTAATTCTCCATTTTTTCTCTGTTCGTTTGAGTTGTTTTTTTCTTACGGTAAAAAGACAATAAAAACGGTAAGGTTTATTTTTGTTTATAGA
CDS Sequence
- >AT3G26900.2
ATGGAGATCTTCTCTGCGTCTGCTTCTCTAACTTTAACTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTACTCTCTGCAAGCCGTTGCTGTCTTCTTCTTCTACTAGACTCATTTCTTGTCACAGTCGTATAGCTCCGTCTCGGTCTCTCGCAGATCAATCCGCCTCTACTGGGATCAGTGTTGTTGATTCGGATCCCATTGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAACTGAAAGGAGCTTCCATATTTCTGGTTGGAATTAATAACTCTATTAAAACGAACACGGGGAAGCTTTTGGCTGAGGCATTACGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGGTGGAAATGTGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAAGAATCAGAGACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGGTGCGGTCCAAAGCTTGAGAAATCTTGCACTTCTTAGACACGGGATCTCCATATGGATCGATGTTCCTCTGGATATCACTGCTAAAGGGGATGATGATTCATTCCACTCAGAACCTTCCCCTGAGTTGTTTGACACACTAAAAGCGAGTTACGAGAAATCAAGAAAGGGTTACGAAACAGCAGATGTATCCATTTCCCTTGAAAAAATAGCTACAAAGCTAGAATTTGAAGACTTGGAAGCAGTAACTTCTGAAGACATTGCTTTGGAGATTCTGAAAGAAATAGAGAAGTTGACAAGAGTGAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAG - >AT3G26900.1
ATGGAGATCTTCTCTGCGTCTGCTTCTCTAACTTTAACTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTACTCTCTGCAAGCCGTTGCTGTCTTCTTCTTCTACTAGACTCATTTCTTGTCACAGTCGTATAGCTCCGTCTCGGTCTCTCGCAGATCAATCCGCCTCTACTGGGATCAGTGTTGTTGATTCGGATCCCATTGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAACTGAAAGGAGCTTCCATATTTCTGGTTGGAATTAATAACTCTATTAAAACGAACACGGGGAAGCTTTTGGCTGAGGCATTACGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGGTGGAAATGTGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAAGAATCAGAGACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGGTGCGGTCCAAAGCTTGAGAAATCTTGCACTTCTTAGACACGGGATCTCCATATGGATCGATGTTCCTCTGGATATCACTGCTAAAGGGGATGATGATTCATTCCACTCAGAACCTTCCCCTGAGTTGTTTGACACACTAAAAGCGAGTTACGAGAAATCAAGAAAGGGTTACGAAACAGCAGATGTATCCATTTCCCTTGAAAAAATAGCTACAAAGCTAGAATTTGAAGACTTGGAAGCAGTAACTTCTGAAGACATTGCTTTGGAGATTCTGAAAGAAATAGAGAAGTTGACAAGAGTGAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAG - >AT3G26900.3
ATGGAGATCTTCTCTGCGTCTGCTTCTCTAACTTTAACTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTACTCTCTGCAAGCCGTTGCTGTCTTCTTCTTCTACTAGACTCATTTCTTGTCACAGTCGTATAGCTCCGTCTCGGTCTCTCGCAGATCAATCCGCCTCTACTGGGATCAGTGTTGTTGATTCGGATCCCATTGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAACTGAAAGGAGCTTCCATATTTCTGGTTGGAATTAATAACTCTATTAAAACGAACACGGGGAAGCTTTTGGCTGAGGCATTACGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGGTGGAAATGTGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAAGAATCAGAGACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGGTGCGGTCCAAAGCTTGAGAAATCTTGCACTTCTTAGACACGGGATCTCCATATGGATCGATGTTCCTCTGGATATCACTGCTAAAGGGGATGATGATTCATTCCACTCAGAACCTTCCCCTGAGTTGTTTGACACACTAAAAGCGAGTTACGAGAAATCAAGAAAGGGTTACGAAACAGCAGATGTATCCATTTCCCTTGAAAAAATAGCTACAAAGCTAGAATTTGAAGACTTGGAAGCAGTAACTTCTGAAGACATTGCTTTGGAGATTCTGAAAGAAATAGAGAAGTTGACAAGAGTGAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAG
Protein Sequence
- >AT3G26900.2
MEIFSASASLTLTGFVPRLLPLLSPQARTTLCKPLLSSSSTRLISCHSRIAPSRSLADQSASTGISVVDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLDITAKGDDDSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATKLEFEDLEAVTSEDIALEILKEIEKLTRVKKMMEEASRPF - >AT3G26900.1
MEIFSASASLTLTGFVPRLLPLLSPQARTTLCKPLLSSSSTRLISCHSRIAPSRSLADQSASTGISVVDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLDITAKGDDDSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATKLEFEDLEAVTSEDIALEILKEIEKLTRVKKMMEEASRPF - >AT3G26900.3
MEIFSASASLTLTGFVPRLLPLLSPQARTTLCKPLLSSSSTRLISCHSRIAPSRSLADQSASTGISVVDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLDITAKGDDDSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATKLEFEDLEAVTSEDIALEILKEIEKLTRVKKMMEEASRPF