Information report for AT3G26650
Gene Details
|
|
Functional Descriptions
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0009409 — acts upstream of or within — response to cold
- GO:0009570 — located in — chloroplast stroma
- GO:0009535 — located in — chloroplast thylakoid membrane
- GO:0004365 — enables — glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
- GO:0009941 — located in — chloroplast envelope
- GO:0019253 — involved in — reductive pentose-phosphate cycle
- GO:0009507 — located in — chloroplast
- GO:0019253 — acts upstream of or within — reductive pentose-phosphate cycle
- GO:0005515 — enables — protein binding
- GO:0048046 — located in — apoplast
- GO:0009416 — acts upstream of or within — response to light stimulus
- GO:0006006 — involved in — glucose metabolic process
Functional Keywords
- vascular leaf , stem , shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , guard cell
Literature and News
- Effects of light and chloroplast functional state on expression of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in long hypocotyl (hy) mutants and wild-type Arabidopsis thaliana. DOI: 10.1104/pp.108.3.1013 ; PMID: 7630933
- Identification of a light-responsive region of the nuclear gene encoding the B subunit of chloroplast glyceraldehyde 3-phosphate dehydrogenase from Arabidopsis thaliana. DOI: 10.1104/pp.105.1.357 ; PMID: 8029358
- Effects of blue and red light on expression of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase of Arabidopsis thaliana. DOI: 10.1104/pp.103.4.1115 ; PMID: 8290625
- Stress responses and metabolic regulation of glyceraldehyde-3-phosphate dehydrogenase genes in Arabidopsis. DOI: 10.1104/pp.101.1.209 ; PMID: 8278495
- Cloning and chromosomal mapping of nuclear genes encoding chloroplast and cytosolic glyceraldehyde-3-phosphate-dehydrogenase from Arabidopsis thaliana. DOI: 10.1016/0378-1119(92)90290-6 ; PMID: 1398114
- Intron existence predated the divergence of eukaryotes and prokaryotes. DOI: 10.1126/science.3055302 ; PMID: 3055302
- Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana. DOI: 10.1023/a:1010602031070 ; PMID: 11442054
- Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. DOI: 10.1016/s0006-291x(02)02892-9 ; PMID: 12504119
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Co-ordinated gene expression of photosynthetic glyceraldehyde-3-phosphate dehydrogenase, phosphoribulokinase, and CP12 in Arabidopsis thaliana. DOI: 10.1093/jxb/eri020 ; PMID: 15533878
- Reconstitution and properties of the recombinant glyceraldehyde-3-phosphate dehydrogenase/CP12/phosphoribulokinase supramolecular complex of Arabidopsis. DOI: 10.1104/pp.105.068445 ; PMID: 16258009
- The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show and long-term exposure to low temperature. DOI: 10.1111/j.1365-313X.2006.02821.x ; PMID: 16923014
- Proteomic analysis of S-nitrosylated proteins in Arabidopsis thaliana undergoing hypersensitive response. DOI: 10.1002/pmic.200700536 ; PMID: 18297659
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Expression analysis of the Arabidopsis CP12 gene family suggests novel roles for these proteins in roots and floral tissues. DOI: 10.1093/jxb/ern236 ; PMID: 18974062
- Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. DOI: 10.1104/pp.109.152413 ; PMID: 20118269
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Deciphering the Binding of Salicylic Acid to Arabidopsis thaliana Chloroplastic GAPDH-A1. DOI: 10.3390/ijms21134678 ; PMID: 32630078
- Integrative transcriptomic and TMT-based proteomic analysis reveals the mechanism by which AtENO2 affects seed germination under salt stress. DOI: 10.3389/fpls.2022.1035750 ; PMID: 36340336
- Glyceraldehyde-3-phosphate dehydrogenase subunits A and B are essential to maintain photosynthetic efficiency. DOI: 10.1093/plphys/kiad256 ; PMID: 37099455
- Intron existence predated the divergence of eukaryotes and prokaryotes. DOI: 10.1126/science.3055302 ; PMID: 3055302
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show and long-term exposure to low temperature. DOI: 10.1111/j.1365-313X.2006.02821.x ; PMID: 16923014
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Proteomic analysis of S-nitrosylated proteins in Arabidopsis thaliana undergoing hypersensitive response. DOI: 10.1002/pmic.200700536 ; PMID: 18297659
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. DOI: 10.1016/j.phytochem.2008.04.007 ; PMID: 18538804
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. DOI: 10.1074/mcp.M500180-MCP200 ; PMID: 16207701
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
- Identification of multiple salicylic acid-binding proteins using two high throughput screens. DOI: 10.3389/fpls.2014.00777 ; PMID: 25628632
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178VLF6
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VLF6
- EnsemblPlants: AT3G26650.1
- Gramene: AT3G26650.1
- KEGG: ath:AT3G26650
- Orthologous matrix: WKDMEVD
- ExpressionAtlas: AT3G26650
- InterPro: IPR006424, IPR020828, IPR020829
- PANTHER: PTHR43148
- SUPFAM: SSF51735, SSF55347
- PROSITE: PS00071
- Gene3D: 3.30.360.10, 3.40.50.720
- OrthoDB: A0A178VLF6
- SWISS-MODEL: A0A178VLF6
- Conserved Domain Database: cd05214, cd18126
Homologs
- Actinidia chinensis Achn306271
- Lactuca sativa gene-LSAT_0X6440
- Malus domestica MDP0000275412
- Oryza sativa GADPH;OsGAPB, OsGAPC3, OsGapC2, OsGAPDH1
- Triticum aestivum TaGAPDH2-2D, TaGAPDH2-2B, TaGAPDH2-2A
Sequences
cDNA Sequence
- >AT3G26650.1
AGCCAGTCCTAAGAACCTCTGCTCTAAAAAGTCTTAGCTTTGAAAGTCAGACAAATGGAGAGCAGCCTTATCCTCCTTTTATAACCGTGACCACACACACAAATGAAGAAGCCCAAATGAAAGGCCCAAAAATCTAAAAAATAGGTGAAGGAGGGACTTTGTGAATATGTGATCATAGAAACATGAAGAGACAAGAGAGTGGTAAAACCACAACCATAGAAACAAGTAAGAAAGCTATCCAGAATCTAATCTTATTTGCCTCCAAGTCATCAATTCTTTATCCTATATTACTAGTCTCTGCTTCACCAATCCTTTTTGCTCTCCTGTCTGCTACAAACCTTAACTTGGATTCTTTCTGGTCACCATGGCTTCGGTTACTTTCTCTGTCCCCAAGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTCTCTTCCCTTCGGCAAGAAACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATTAATGGATTCGGTAGGATCGGGAGGAACTTCCTGAGATGTTGGCATGGTCGCAAGGACTCTCCTCTTGATATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCGCATTTACTTAAATACGACTCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTGTTGATGGAAAGATCATCCAAGTTGTCTCTAACCGAAACCCGTCTCTTCTCCCTTGGAAGGAGCTAGGAATTGACATTGTCATCGAAGGAACCGGAGTGTTTGTGGATAGAGAAGGTGCAGGGAAACACATTGAAGCTGGTGCCAAGAAGGTTATCATTACTGCTCCAGGCAAAGGAGATATTCCAACTTATGTCGTTGGTGTCAATGCAGATGCTTACAGTCATGATGAACCTATCATCAGCAATGCATCTTGCACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGCTAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCTACTTCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAACTCAACGGGATCGCTCTCCGTGTACCAACACCAAACGTATCAGTGGTTGATCTCGTTGTGCAGGTCTCAAAGAAGACATTTGCTGAGGAAGTCAACGCTGCTTTCAGAGATTCTGCAGAGAAAGAGCTTAAAGGTATACTCGATGTCTGCGATGAGCCACTAGTGTCCGTTGATTTCAGATGCTCAGATTTTTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATATGGTTAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACTTGGCTGACATTGTTGCCAACAACTGGAAGTGATTTCATCAAACTTTGTTTCATGTTTTTCCATTTTTTTCTCTTTCTCTTTTTTACATTATGGTTCTCAAAATATCGGTGAAGACTGTATAATTGTAGTATGGATTTGTAATAAATAATCATAAACTATTCAAACTTGTTTACATTTTGTGTTTTGTGATACACTTTTCAGTATAGCTAATGGCCTCTTGATTATGATT
CDS Sequence
- >AT3G26650.1
ATGGCTTCGGTTACTTTCTCTGTCCCCAAGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTCTCTTCCCTTCGGCAAGAAACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATTAATGGATTCGGTAGGATCGGGAGGAACTTCCTGAGATGTTGGCATGGTCGCAAGGACTCTCCTCTTGATATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCGCATTTACTTAAATACGACTCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTGTTGATGGAAAGATCATCCAAGTTGTCTCTAACCGAAACCCGTCTCTTCTCCCTTGGAAGGAGCTAGGAATTGACATTGTCATCGAAGGAACCGGAGTGTTTGTGGATAGAGAAGGTGCAGGGAAACACATTGAAGCTGGTGCCAAGAAGGTTATCATTACTGCTCCAGGCAAAGGAGATATTCCAACTTATGTCGTTGGTGTCAATGCAGATGCTTACAGTCATGATGAACCTATCATCAGCAATGCATCTTGCACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGCTAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCTACTTCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAACTCAACGGGATCGCTCTCCGTGTACCAACACCAAACGTATCAGTGGTTGATCTCGTTGTGCAGGTCTCAAAGAAGACATTTGCTGAGGAAGTCAACGCTGCTTTCAGAGATTCTGCAGAGAAAGAGCTTAAAGGTATACTCGATGTCTGCGATGAGCCACTAGTGTCCGTTGATTTCAGATGCTCAGATTTTTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATATGGTTAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACTTGGCTGACATTGTTGCCAACAACTGGAAGTGA
Protein Sequence
- >AT3G26650.1
MASVTFSVPKGFTEFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSGGYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK