Information report for AT3G26420
Gene Details
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Functional Descriptions
- PO:0000003 — whole plant — planta entera (Spanish, exact), 植物体全体 (Japanese, exact), clonal colony (related), colony (related), bush (narrow), frutex (narrow), frutices (narrow), gametophyte (narrow), herb (narrow), liana (narrow), prothalli (narrow), prothallium (narrow), prothallus (narrow), seedling (narrow), shrub (narrow), sporophyte (narrow), suffrutex (narrow), suffrutices (narrow), tree (narrow), vine (narrow), woody clump (narrow), genet (broad), ramet (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
Literature and News
- Bicistronic and fused monocistronic transcripts are derived from adjacent loci in the Arabidopsis genome. DOI: 10.1261/rna.7114505 ; PMID: 15659355
- Cold-inducible zinc finger-containing glycine-rich RNA-binding protein contributes to the enhancement of freezing tolerance in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2005.02420.x ; PMID: 15941401
- Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes. DOI: 10.1186/1471-2164-9-159 ; PMID: 18402682
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Comparative analysis of Arabidopsis zinc finger-containing glycine-rich RNA-binding proteins during cold adaptation. DOI: 10.1016/j.plaphy.2010.08.013 ; PMID: 20850334
- Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes. DOI: 10.1007/s00438-015-1080-0 ; PMID: 26123085
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Progressive chromatin silencing of ABA biosynthesis genes permits seed germination in Arabidopsis. DOI: 10.1093/plcell/koac134 ; PMID: 35522002
- Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. DOI: 10.1093/nar/30.3.623 ; PMID: 11809873
- The role of a zinc finger-containing glycine-rich RNA-binding protein during the cold adaptation process in Arabidopsis thaliana. DOI: 10.1093/pcp/pcj047 ; PMID: 16608866
Gene Resources
- UniProt: A0A5S9XG86
- EMBL: CACSHJ010000089
- AlphaFoldDB: A0A5S9XG86
- EnsemblPlants: AT3G26420.1
- Gramene: AT3G26420.1
- KEGG: ath:AT3G26420
- Orthologous matrix: EDIEYRC
- ExpressionAtlas: AT3G26420
- InterPro: IPR000504, IPR001878, IPR012677
- PANTHER: PTHR48028, PTHR48028:SF2
- SUPFAM: SSF54928, SSF57756
- PROSITE: PS50102, PS50158
- Gene3D: 3.30.70.330, 4.10.60.10
- OrthoDB: A0A5S9XG86
- SWISS-MODEL: A0A5S9XG86
- Conserved Domain Database: cd21608
Homologs
- Daucus carota DCAR_003671
- Lactuca sativa gene-LSAT_7X91261, gene-LSAT_5X119120
- Manihot esculenta MANES_15G163200
- Oryza sativa OsRZ1, OsRZ3, OsRZ2
- Populus trichocarpa POPTR_009G116400v3, POPTR_004G155300v3
- Solanum lycopersicum Solyc10g051390.2
- Solanum tuberosum PGSC0003DMG400033915, PGSC0003DMG400033902, PGSC0003DMG400033020, PGSC0003DMG400000708, PGSC0003DMG400033903
- Triticum aestivum TaGRP2
Sequences
cDNA Sequence
- >AT3G26420.1
GTGTGTTCTGCCAAAGTTTCTCTGCAGCTTCTCCTCTTCTCAGAAATTAGGGTTCCGTCTCAAATTACGAGCAGATCTCGTACTCTCTGAAGATGTCTGAAGATCCGGAGTACCGTTGCTTCATTGGTGGGCTTGCTTGGACAACGTCTGATCGTGGTCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCGTTGAGGCCAAGGTGGTTCTTGACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGATTCATCACTTTCGATGAGAAAAAAGCTATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTGGATGGGCGAACTATCACTGTTGATAAAGCTCAGCCTCATCAGGGTGGTGCAGGCAGAGATAATGATGGTGACCGTGGTCGAGACCGTGGATATGATCGTGATCGCAGTCGTCCCTCTGGTGGGCGAGGTGGTGGAGATTGCTTTAAATGTGGCAAGCCTGGACATTTTGCAAGAGAGTGTCCTTCTGAAAGTAGTAGAGATGGTGGTGGAAGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGGTGCAAAAGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTACAGCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTATGGTAGTAGGGATGGTGGAGGTAGTCGCTATGGACCTGATCGCAGTGGTGAACGCGCTGGAGGACGCAGCCGGGATGGTGGCAGCCGTGGAGCTCCAGGAGGTGAGAGGCACAGTCGTGCTCCATATGACCGCCCCAGAGCTGGTGGTTTCCACTAGAATTCTACTCCAAAGGTTAAAGAAGTTGAAGGTTTCTGCTTTCAGCTCGTGTCAAGTCAAAGTTACGCTTGATGGTCTATTTTCTTCAATGTATTTGGATAGCTCGAGAAAGAAGATGTGTTCTCTATTTTGGCCCTAAACTCAAGAGTCGACTATGTTCCTAAAGTGCTCTCTCTCCTTTTGATATGTTGATCCCTATGGAAACCTTGTGCTTGGTTGGTTTGAGACAATTTGAGATGTGCTACTTTATGCTTATCGTAATGAATGCGTGGGTTATCCCCCAACACCAAATATGCAAAAGCCTCAGGATGGTCTGATACTCGGGTTTAGCCGTGAAAATTAAAGACTGATCTATAAAACTTGTGATGGGATTGGGAAATATACATTGCTGATTGATACTTGGCTACTGGAACTCAAACATCCCTTCATGAGCAACAAATTGTCATTTTCAGGAAAAAGATTGACTTTGTGCAATTTTAGATCTTGGCAAGTCAAATCCAATAGTTTTCTTCAACTAGGGAAATTTCTACAGCCAAATGGTCTCTGGTTGGCTCGTCTAGTATAGCTCACTGGGTTTATCTTCGATCTATTCTTTGTGGGTTCTTCGTGCCTCTTCGTCTACTTTGTTTCTTGCTCGTGACCTCTACCTCTGCCTTTGATTCTCAAGCTCTAAACTCCAGGAATTGGGAAATGGTGTTAATGTATATATAGTTAATATACGCTTGAATAGGTATCCTTACTTTGATAATTTGTTGAAATTGCATACATAAATAGGTCACACGAGTTATGTCGGGAAAACACTGACTTGATTATTTTATACAAGTGAATAGTATATGTATGGTTAGAACTTAGATGCATGACTAGTTCGTTCACCTTCTTTCACAATTTTGTATTGCATACATACATACATTGCTTAGGTGAATATATAATCAATTTACCATAAATAAATGACTTTGTAAGTCTCATAATTTAAGACTTTGTTTCTAACATAAAGAAAGACTTTGTAGAACATATGAGTTGGTGTATAGCTTAAACGTTGACTCAATTATTTGATAGAAATCGAATAGCATAGCTATTCGACGCCACTATTCGGTTACTCGTACCTCGACCACACCAAATTAAGAACACTTACCGGAAGAAGATAAAAGGAGAAAATGGAAACTAATCTCTTGTTGGTAAAGTGTGTCTTATTAGCATCATGTCTCATACATCCCCGTGCTTGCTCTCCTTCTTGCAATTTCCCGGCGATATTCAACTTCGGCGACTCTAACTCCGACACAGGTGGCCTTTCTGCCTCTTTCGGACAAGCCCCTTACCCAAATGGCCAAACCTTCTTCCACTCCCCTTCCGGTCGTTTCTCAGATGGTCGACTCATCATTGACTTCATAGGTGGAGTGTTTAAGAAATTGCTTCCCAAGAAAGAGTATTTCTCTCAAGCATTGTACACATTCGACATCGGTCAGAACGATCTCACCGCTGGACTAAAACTTAACATGACTTCAGATCAAATCAAGGCTTATATACCAGATGTTCATGATCAGCTCTCTAACGTCATTCGTAAGGTGTATAGTAAAGGAGGAAGAAGATTTTGGATACACAACACAGCTCCACTTGGTTGTTTACCTTATGTTTTAGACCGGTTCCCAGTACCGGCTTCTCAAATCGACAATCACGGTTGTGCAATTCCGCGTAATGAGATTGCTCGATACTATAACTCTGAACTTAAAAGAAGAGTGATTGAGTTGAGAAAAGAGCTCTCTGAAGCTGCGTTTACTTATGTTGATATCTACTCTATCAAGCTTACTCTCATCACTCAAGCCAAGAAACTCGGTTTTAGGTATCCTTTGGTGGCTTGTTGTGGACATGGTGGGAAGTACAATTTCAACAAGCTTATTAAATGTGGAGCTAAAGTTATGATCAAAGGGAAAGAGATTGTGCTTGCTAAGTCTTGTAACGATGTGTCGTTTAGAGTTAGCTGGGACGGTATACATTTCACTGAAACGACAAACAGTTGGATCTTTCAGCAAATAAACGACGGGGCGTTTTCGGATCCTCCTCTTCCTGTGAAGTCTGCCTGCACCAGATAGAAGAACTTAGGGAATCATATGACCAAAGTGTCCTTGAAAATGGGGACAAATAAAAGTTCTTTGGAATATTTGTTTTTTGTCAAGTTCTAAGAAAATTCTCATGAAAGTGAAATCGT
CDS Sequence
- >AT3G26420.1
ATGTCTGAAGATCCGGAGTACCGTTGCTTCATTGGTGGGCTTGCTTGGACAACGTCTGATCGTGGTCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCGTTGAGGCCAAGGTGGTTCTTGACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGATTCATCACTTTCGATGAGAAAAAAGCTATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTGGATGGGCGAACTATCACTGTTGATAAAGCTCAGCCTCATCAGGGTGGTGCAGGCAGAGATAATGATGGTGACCGTGGTCGAGACCGTGGATATGATCGTGATCGCAGTCGTCCCTCTGGTGGGCGAGGTGGTGGAGATTGCTTTAAATGTGGCAAGCCTGGACATTTTGCAAGAGAGTGTCCTTCTGAAAGTAGTAGAGATGGTGGTGGAAGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGGTGCAAAAGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTACAGCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTATGGTAGTAGGGATGGTGGAGGTAGTCGCTATGGACCTGATCGCAGTGGTGAACGCGCTGGAGGACGCAGCCGGGATGGTGGCAGCCGTGGAGCTCCAGGAGGTGAGAGGCACAGTCGTGCTCCATATGACCGCCCCAGAGCTGGTGGTTTCCACTAG
Protein Sequence
- >AT3G26420.1
MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAPGGERHSRAPYDRPRAGGFH