Gene Details:
- Gene ID: AT3G26420
- Gene Symbol: ATRZ-1A, RBGB2, RZ-1A
- Gene Name: RNA-binding glycine-rich protein B2, RZ-1A
- Description: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000003 — whole plant — planta entera (Spanish, exact), 植物体全体 (Japanese, exact), clonal colony (related), colony (related), bush (narrow), frutex (narrow), frutices (narrow), gametophyte (narrow), herb (narrow), liana (narrow), prothalli (narrow), prothallium (narrow), prothallus (narrow), seedling (narrow), shrub (narrow), sporophyte (narrow), suffrutex (narrow), suffrutices (narrow), tree (narrow), vine (narrow), woody clump (narrow), genet (broad), ramet (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Function-related keywords:
Literature:
- Bicistronic and fused monocistronic transcripts are derived from adjacent loci in the Arabidopsis genome. DOI: 10.1261/rna.7114505 ; PMID: 15659355
- Cold-inducible zinc finger-containing glycine-rich RNA-binding protein contributes to the enhancement of freezing tolerance in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2005.02420.x ; PMID: 15941401
- Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes. DOI: 10.1186/1471-2164-9-159 ; PMID: 18402682
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Comparative analysis of Arabidopsis zinc finger-containing glycine-rich RNA-binding proteins during cold adaptation. DOI: 10.1016/j.plaphy.2010.08.013 ; PMID: 20850334
- Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes. DOI: 10.1007/s00438-015-1080-0 ; PMID: 26123085
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Progressive chromatin silencing of ABA biosynthesis genes permits seed germination in Arabidopsis. DOI: 10.1093/plcell/koac134 ; PMID: 35522002
- Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. DOI: 10.1093/nar/30.3.623 ; PMID: 11809873
- The role of a zinc finger-containing glycine-rich RNA-binding protein during the cold adaptation process in Arabidopsis thaliana. DOI: 10.1093/pcp/pcj047 ; PMID: 16608866
Sequences:
cDNA Sequence
- >AT3G26420.1
GTGTGTTCTGCCAAAGTTTCTCTGCAGCTTCTCCTCTTCTCAGAAATTAGGGTTCCGTCTCAAATTACGAGCAGATCTCGTACTCTCTGAAGATGTCTGAAGATCCGGAGTACCGTTGCTTCATTGGTGGGCTTGCTTGGACAACGTCTGATCGTGGTCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCGTTGAGGCCAAGGTGGTTCTTGACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGATTCATCACTTTCGATGAGAAAAAAGCTATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTGGATGGGCGAACTATCACTGTTGATAAAGCTCAGCCTCATCAGGGTGGTGCAGGCAGAGATAATGATGGTGACCGTGGTCGAGACCGTGGATATGATCGTGATCGCAGTCGTCCCTCTGGTGGGCGAGGTGGTGGAGATTGCTTTAAATGTGGCAAGCCTGGACATTTTGCAAGAGAGTGTCCTTCTGAAAGTAGTAGAGATGGTGGTGGAAGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGGTGCAAAAGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTACAGCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTATGGTAGTAGGGATGGTGGAGGTAGTCGCTATGGACCTGATCGCAGTGGTGAACGCGCTGGAGGACGCAGCCGGGATGGTGGCAGCCGTGGAGCTCCAGGAGGTGAGAGGCACAGTCGTGCTCCATATGACCGCCCCAGAGCTGGTGGTTTCCACTAGAATTCTACTCCAAAGGTTAAAGAAGTTGAAGGTTTCTGCTTTCAGCTCGTGTCAAGTCAAAGTTACGCTTGATGGTCTATTTTCTTCAATGTATTTGGATAGCTCGAGAAAGAAGATGTGTTCTCTATTTTGGCCCTAAACTCAAGAGTCGACTATGTTCCTAAAGTGCTCTCTCTCCTTTTGATATGTTGATCCCTATGGAAACCTTGTGCTTGGTTGGTTTGAGACAATTTGAGATGTGCTACTTTATGCTTATCGTAATGAATGCGTGGGTTATCCCCCAACACCAAATATGCAAAAGCCTCAGGATGGTCTGATACTCGGGTTTAGCCGTGAAAATTAAAGACTGATCTATAAAACTTGTGATGGGATTGGGAAATATACATTGCTGATTGATACTTGGCTACTGGAACTCAAACATCCCTTCATGAGCAACAAATTGTCATTTTCAGGAAAAAGATTGACTTTGTGCAATTTTAGATCTTGGCAAGTCAAATCCAATAGTTTTCTTCAACTAGGGAAATTTCTACAGCCAAATGGTCTCTGGTTGGCTCGTCTAGTATAGCTCACTGGGTTTATCTTCGATCTATTCTTTGTGGGTTCTTCGTGCCTCTTCGTCTACTTTGTTTCTTGCTCGTGACCTCTACCTCTGCCTTTGATTCTCAAGCTCTAAACTCCAGGAATTGGGAAATGGTGTTAATGTATATATAGTTAATATACGCTTGAATAGGTATCCTTACTTTGATAATTTGTTGAAATTGCATACATAAATAGGTCACACGAGTTATGTCGGGAAAACACTGACTTGATTATTTTATACAAGTGAATAGTATATGTATGGTTAGAACTTAGATGCATGACTAGTTCGTTCACCTTCTTTCACAATTTTGTATTGCATACATACATACATTGCTTAGGTGAATATATAATCAATTTACCATAAATAAATGACTTTGTAAGTCTCATAATTTAAGACTTTGTTTCTAACATAAAGAAAGACTTTGTAGAACATATGAGTTGGTGTATAGCTTAAACGTTGACTCAATTATTTGATAGAAATCGAATAGCATAGCTATTCGACGCCACTATTCGGTTACTCGTACCTCGACCACACCAAATTAAGAACACTTACCGGAAGAAGATAAAAGGAGAAAATGGAAACTAATCTCTTGTTGGTAAAGTGTGTCTTATTAGCATCATGTCTCATACATCCCCGTGCTTGCTCTCCTTCTTGCAATTTCCCGGCGATATTCAACTTCGGCGACTCTAACTCCGACACAGGTGGCCTTTCTGCCTCTTTCGGACAAGCCCCTTACCCAAATGGCCAAACCTTCTTCCACTCCCCTTCCGGTCGTTTCTCAGATGGTCGACTCATCATTGACTTCATAGGTGGAGTGTTTAAGAAATTGCTTCCCAAGAAAGAGTATTTCTCTCAAGCATTGTACACATTCGACATCGGTCAGAACGATCTCACCGCTGGACTAAAACTTAACATGACTTCAGATCAAATCAAGGCTTATATACCAGATGTTCATGATCAGCTCTCTAACGTCATTCGTAAGGTGTATAGTAAAGGAGGAAGAAGATTTTGGATACACAACACAGCTCCACTTGGTTGTTTACCTTATGTTTTAGACCGGTTCCCAGTACCGGCTTCTCAAATCGACAATCACGGTTGTGCAATTCCGCGTAATGAGATTGCTCGATACTATAACTCTGAACTTAAAAGAAGAGTGATTGAGTTGAGAAAAGAGCTCTCTGAAGCTGCGTTTACTTATGTTGATATCTACTCTATCAAGCTTACTCTCATCACTCAAGCCAAGAAACTCGGTTTTAGGTATCCTTTGGTGGCTTGTTGTGGACATGGTGGGAAGTACAATTTCAACAAGCTTATTAAATGTGGAGCTAAAGTTATGATCAAAGGGAAAGAGATTGTGCTTGCTAAGTCTTGTAACGATGTGTCGTTTAGAGTTAGCTGGGACGGTATACATTTCACTGAAACGACAAACAGTTGGATCTTTCAGCAAATAAACGACGGGGCGTTTTCGGATCCTCCTCTTCCTGTGAAGTCTGCCTGCACCAGATAGAAGAACTTAGGGAATCATATGACCAAAGTGTCCTTGAAAATGGGGACAAATAAAAGTTCTTTGGAATATTTGTTTTTTGTCAAGTTCTAAGAAAATTCTCATGAAAGTGAAATCGT
CDS Sequence
- >AT3G26420.1
ATGTCTGAAGATCCGGAGTACCGTTGCTTCATTGGTGGGCTTGCTTGGACAACGTCTGATCGTGGTCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCGTTGAGGCCAAGGTGGTTCTTGACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGATTCATCACTTTCGATGAGAAAAAAGCTATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTGGATGGGCGAACTATCACTGTTGATAAAGCTCAGCCTCATCAGGGTGGTGCAGGCAGAGATAATGATGGTGACCGTGGTCGAGACCGTGGATATGATCGTGATCGCAGTCGTCCCTCTGGTGGGCGAGGTGGTGGAGATTGCTTTAAATGTGGCAAGCCTGGACATTTTGCAAGAGAGTGTCCTTCTGAAAGTAGTAGAGATGGTGGTGGAAGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGGTGCAAAAGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTACAGCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTATGGTAGTAGGGATGGTGGAGGTAGTCGCTATGGACCTGATCGCAGTGGTGAACGCGCTGGAGGACGCAGCCGGGATGGTGGCAGCCGTGGAGCTCCAGGAGGTGAGAGGCACAGTCGTGCTCCATATGACCGCCCCAGAGCTGGTGGTTTCCACTAG
Protein Sequence
- >AT3G26420.1
MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAPGGERHSRAPYDRPRAGGFH