Information report for AT3G25860
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , guard cell
Literature and News
- Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database. DOI: 10.1104/pp.103.022988 ; PMID: 12805597
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Lipoic acid-dependent oxidative catabolism of alpha-keto acids in mitochondria provides evidence for branched-chain amino acid catabolism in Arabidopsis. DOI: 10.1104/pp.103.035675 ; PMID: 14764908
- Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins. DOI: 10.1002/rcm.1376 ; PMID: 15052571
- The effect of alpha-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination. DOI: 10.1104/pp.103.036293 ; PMID: 15047896
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis. DOI: 10.1111/j.1365-313X.2005.02355.x ; PMID: 15773857
- Patterns of protein oxidation in Arabidopsis seeds and during germination. DOI: 10.1104/pp.105.062778 ; PMID: 15908592
- pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. DOI: 10.1105/tpc.105.036392 ; PMID: 16326926
- The heavy metal hyperaccumulator Thlaspi caerulescens expresses many species-specific genes, as identified by comparative expressed sequence tag analysis. DOI: 10.1111/j.1469-8137.2006.01714.x ; PMID: 16684236
- Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms. DOI: 10.1104/pp.106.082057 ; PMID: 16679420
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Articulation of three core metabolic processes in Arabidopsis: fatty acid biosynthesis, leucine catabolism and starch metabolism. DOI: 10.1186/1471-2229-8-76 ; PMID: 18616834
- Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. DOI: 10.1104/pp.109.152413 ; PMID: 20118269
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Acyl-lipid metabolism. DOI: 10.1199/tab.0161 ; PMID: 23505340
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. DOI: 10.1021/pr034025j ; PMID: 12938931
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
Gene Resources
- UniProt: A0A5S9XFR8
- EMBL: CACSHJ010000089, LR881468
- AlphaFoldDB: A0A5S9XFR8
- EnsemblPlants: AT3G25860.1
- Gramene: AT3G25860.1
- KEGG: ath:AT3G25860
- Orthologous matrix: VEIECWQ
- ExpressionAtlas: AT3G25860
- InterPro: IPR000089, IPR001078, IPR003016
- PANTHER: PTHR23151, PTHR23151:SF83
- SUPFAM: SSF47005, SSF51230, SSF52777
- PROSITE: PS00189, PS50968, PS51826
- Gene3D: 2.40.50.100, 3.30.559.10, 4.10.320.10
- OrthoDB: A0A5S9XFR8
- SWISS-MODEL: A0A5S9XFR8
- Conserved Domain Database: cd06849
Homologs
- Daucus carota DCAR_026406
Sequences
cDNA Sequence
- >AT3G25860.1
ATTTTCTTTGTTTCTAGATGGTTTAACCTAAACCGAAGTTTCAGATAAATTAATCCGGTTTAATTATATATCCGGTTATTAAACTGGTAACTGATACAAATGTAGGCGAAGACGCTCAACGAACTTCAACCTCGTCTTCTCCGTCCACTTCACTCTCTCTAAACTCTCTCTCAGATCTCTCTCTCTCTGTGATTCAACAATGGCGGTTTCTTCTTCTTCGTTTCTATCGACAGCTTCACTAACCAATTCCAAATCCAACATTTCATTCGCTTCCTCAGTATCCCCATCCCTCCGCAGCGTCGTTTTCCGCTCCACGACTCCGGCGACTTCTCACCGTCGTTCAATGACGGTCCGATCTAAGATTCGTGAAATTTTCATGCCGGCGTTATCATCAACCATGACGGAAGGCAAAATCGTGTCATGGATCAAAACAGAAGGCGAGAAACTCGCCAAGGGAGAGAGTGTTGTGGTTGTTGAATCTGATAAAGCCGATATGGATGTAGAAACGTTTTACGATGGTTATCTTGCTGCGATTGTCGTCGGAGAAGGTGAAACAGCTCCGGTTGGTGCTGCGATTGGATTGTTAGCTGAGACTGAAGCTGAGATCGAAGAAGCTAAGAGTAAAGCCGCTTCGAAATCTTCTTCTTCTGTGGCTGAGGCTGTCGTTCCATCTCCTCCTCCGGTTACTTCTTCTCCTGCTCCGGCGATTGCTCAACCGGCTCCGGTGACGGCAGTATCAGATGGTCCGAGGAAGACTGTTGCGACGCCGTATGCTAAGAAGCTTGCTAAACAACACAAGGTTGATATTGAATCCGTTGCTGGAACTGGACCATTCGGTAGGATTACGGCTTCTGATGTGGAGACGGCGGCTGGAATTGCTCCGTCCAAATCCTCCATCGCACCACCGCCTCCTCCTCCACCTCCGGTGACGGCTAAAGCAACCACCACTAATTTGCCTCCTCTGTTACCTGATTCAAGCATTGTTCCTTTCACAGCAATGCAATCTGCAGTATCTAAGAACATGATTGAGAGTCTCTCTGTTCCTACATTCCGTGTTGGTTATCCTGTGAACACTGACGCTCTTGATGCACTTTACGAGAAGGTGAAGCCAAAGGGTGTAACAATGACAGCTTTATTAGCTAAAGCTGCAGGGATGGCCTTGGCTCAGCATCCTGTGGTGAACGCTAGCTGCAAAGACGGGAAGAGTTTTAGTTACAATAGTAGCATTAACATTGCAGTGGCGGTTGCTATCAATGGTGGCCTGATTACGCCTGTTCTACAAGATGCAGATAAGTTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTGGAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATAGATTTGACGCTATTCTTCCGCCAGGACAGGGTGCTATTATGGCTGTTGGAGCGTCAAAGCCAACTGTAGTTGCTGATAAGGATGGATTCTTCAGTGTAAAAAACACAATGCTGGTGAATGTGACTGCAGATCATCGCATTGTGTATGGAGCTGACTTGGCTGCTTTTCTCCAAACCTTTGCAAAGATCATTGAGAATCCAGATAGTTTGACCTTATAAGACGCCAAGCGAAGACGAGAAGTCAAAAACAGTTTCCAAAATTCCTGAGCCAAATTTTTCCCAAGTAAATTTTTTAATCTTCATTGTTCTTGGTCTTGCTCTACTTCTTTTGCATCTTTTTCTTCACTTGTGTTGTATCTGTATTTTTGTTTTCAAGAATCATCATTTTGGGTTTTAAACAAATAATTTCCTATCCAGAATCAGCCCACCGGCCTTAAGAAAAGAGAGTTACTAGACACGGCCTATTATCTGAGGGCATATCTGTTGTGTCTGTATTTTTTTTGGGCACGGCCTTAAAGATTGTGCCCAAGCCAAGCAATCTATTGCTTAGATCTCAATTTACTTAGTAGAACGAACATTATTTGGATTTGAAAATTAGACATATATCAATTAGGGCTGAAATCCAACATACCACAAGCCCAATTCTT
CDS Sequence
- >AT3G25860.1
ATGGCGGTTTCTTCTTCTTCGTTTCTATCGACAGCTTCACTAACCAATTCCAAATCCAACATTTCATTCGCTTCCTCAGTATCCCCATCCCTCCGCAGCGTCGTTTTCCGCTCCACGACTCCGGCGACTTCTCACCGTCGTTCAATGACGGTCCGATCTAAGATTCGTGAAATTTTCATGCCGGCGTTATCATCAACCATGACGGAAGGCAAAATCGTGTCATGGATCAAAACAGAAGGCGAGAAACTCGCCAAGGGAGAGAGTGTTGTGGTTGTTGAATCTGATAAAGCCGATATGGATGTAGAAACGTTTTACGATGGTTATCTTGCTGCGATTGTCGTCGGAGAAGGTGAAACAGCTCCGGTTGGTGCTGCGATTGGATTGTTAGCTGAGACTGAAGCTGAGATCGAAGAAGCTAAGAGTAAAGCCGCTTCGAAATCTTCTTCTTCTGTGGCTGAGGCTGTCGTTCCATCTCCTCCTCCGGTTACTTCTTCTCCTGCTCCGGCGATTGCTCAACCGGCTCCGGTGACGGCAGTATCAGATGGTCCGAGGAAGACTGTTGCGACGCCGTATGCTAAGAAGCTTGCTAAACAACACAAGGTTGATATTGAATCCGTTGCTGGAACTGGACCATTCGGTAGGATTACGGCTTCTGATGTGGAGACGGCGGCTGGAATTGCTCCGTCCAAATCCTCCATCGCACCACCGCCTCCTCCTCCACCTCCGGTGACGGCTAAAGCAACCACCACTAATTTGCCTCCTCTGTTACCTGATTCAAGCATTGTTCCTTTCACAGCAATGCAATCTGCAGTATCTAAGAACATGATTGAGAGTCTCTCTGTTCCTACATTCCGTGTTGGTTATCCTGTGAACACTGACGCTCTTGATGCACTTTACGAGAAGGTGAAGCCAAAGGGTGTAACAATGACAGCTTTATTAGCTAAAGCTGCAGGGATGGCCTTGGCTCAGCATCCTGTGGTGAACGCTAGCTGCAAAGACGGGAAGAGTTTTAGTTACAATAGTAGCATTAACATTGCAGTGGCGGTTGCTATCAATGGTGGCCTGATTACGCCTGTTCTACAAGATGCAGATAAGTTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTGGAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATAGATTTGACGCTATTCTTCCGCCAGGACAGGGTGCTATTATGGCTGTTGGAGCGTCAAAGCCAACTGTAGTTGCTGATAAGGATGGATTCTTCAGTGTAAAAAACACAATGCTGGTGAATGTGACTGCAGATCATCGCATTGTGTATGGAGCTGACTTGGCTGCTTTTCTCCAAACCTTTGCAAAGATCATTGAGAATCCAGATAGTTTGACCTTATAA
Protein Sequence
- >AT3G25860.1
MAVSSSSFLSTASLTNSKSNISFASSVSPSLRSVVFRSTTPATSHRRSMTVRSKIREIFMPALSSTMTEGKIVSWIKTEGEKLAKGESVVVVESDKADMDVETFYDGYLAAIVVGEGETAPVGAAIGLLAETEAEIEEAKSKAASKSSSSVAEAVVPSPPPVTSSPAPAIAQPAPVTAVSDGPRKTVATPYAKKLAKQHKVDIESVAGTGPFGRITASDVETAAGIAPSKSSIAPPPPPPPPVTAKATTTNLPPLLPDSSIVPFTAMQSAVSKNMIESLSVPTFRVGYPVNTDALDALYEKVKPKGVTMTALLAKAAGMALAQHPVVNASCKDGKSFSYNSSINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADKDGFFSVKNTMLVNVTADHRIVYGADLAAFLQTFAKIIENPDSLTL