Information report for AT3G25710
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0000026 — primary root tip — punta de la raíz primaria (Spanish, exact), 一次根端 (Japanese, exact)
- PO:0000272 — protoxylem — portion of protoxylem tissue (exact), protoxilema (Spanish, exact), 原生木（質）部 (Japanese, exact)
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
- The Arabidopsis basic/helix-loop-helix transcription factor family. DOI: 10.1105/tpc.013839 ; PMID: 12897250
- Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. DOI: 10.1105/tpc.151140 ; PMID: 14600211
- Quantification of transcription factor expression from Arabidopsis images. DOI: 10.1093/bioinformatics/btl228 ; PMID: 16873489
- Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY. DOI: 10.1242/dev.006296 ; PMID: 17626058
- BHLH32 modulates several biochemical and morphological processes that respond to Pi starvation in Arabidopsis. DOI: 10.1042/BJ20070102 ; PMID: 17376028
- MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor. DOI: 10.1038/nature08836 ; PMID: 20220754
- Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. DOI: 10.1016/j.diff.2010.02.003 ; PMID: 20219281
- Control of embryonic meristem initiation in Arabidopsis by PHD-finger protein complexes. DOI: 10.1242/dev.074492 ; PMID: 22378640
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite. DOI: 10.1093/jxb/erv025 ; PMID: 25697796
- A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants. DOI: 10.1016/j.devcel.2015.10.022 ; PMID: 26609958
- A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. DOI: 10.1016/j.cub.2014.07.050 ; PMID: 25131670
- A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. DOI: 10.1016/j.cub.2015.10.051 ; PMID: 26616019
- The G-Box Transcriptional Regulatory Code in Arabidopsis. DOI: 10.1104/pp.17.01086 ; PMID: 28864470
- Iron and Phosphate Deficiency Regulators Concertedly Control Coumarin Profiles in Arabidopsis thaliana Roots During Iron, Phosphate, and Combined Deficiencies. DOI: 10.3389/fpls.2019.00113 ; PMID: 30804973
- A Positive Feedback Loop Comprising LHW-TMO5 and Local Auxin Biosynthesis Regulates Initial Vascular Development in Arabidopsis Roots. DOI: 10.1093/pcp/pcz156 ; PMID: 31392340
- Evolution of vascular plants through redeployment of ancient developmental regulators. DOI: 10.1073/pnas.1912470117 ; PMID: 31874927
- Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions. DOI: 10.1126/science.aay4970 ; PMID: 32943451
- Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis. DOI: 10.1073/pnas.2009554117 ; PMID: 32929017
- Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators that Link rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density. DOI: 10.1093/pcp/pcab149 ; PMID: 34791413
- bHLH heterodimer complex variations regulate cell proliferation activity in the meristems of Arabidopsis thaliana. DOI: 10.1016/j.isci.2022.105364 ; PMID: 36339262
- The transcription factor AtMYB12 is part of a feedback loop regulating cell division orientation in the root meristem vasculature. DOI: 10.1093/jxb/erad020 ; PMID: 36651677
- Repressive ZINC FINGER OF ARABIDOPSIS THALIANA proteins promote programmed cell death in the Arabidopsis columella root cap. DOI: 10.1093/plphys/kiad130 ; PMID: 36852889
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
- Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. DOI: 10.1073/pnas.0510607103 ; PMID: 16581911
- Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY. DOI: 10.1242/dev.006296 ; PMID: 17626058
Gene Resources
- UniProt: A0A178VA88
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VA88
- EnsemblPlants: AT3G25710.1
- Gramene: AT3G25710.1
- KEGG: ath:AT3G25710
- Orthologous matrix: PMTMMQM
- ExpressionAtlas: AT3G25710
- InterPro: IPR011598, IPR036638, IPR045847
- PANTHER: PTHR45844, PTHR45844:SF13
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- OrthoDB: A0A178VA88
- SWISS-MODEL: A0A178VA88
- Conserved Domain Database: cd11455
Homologs
- Brassica napus GSBRNA2T00108409001, GSBRNA2T00139167001, GSBRNA2T00077981001
- Brassica oleracea XP_013618371.1, XP_013595350.1
- Brassica rapa XP_009129036.1, XP_009152118.1
- Manihot esculenta Manes.14G097100.2.p
- Raphanus raphanistrum RrC10578_p1
Sequences
cDNA Sequence
- >AT3G25710.1
ATGTGTATGCATTATCAAATGGGATGTTTGTGACCTTTTGTCTCTTCTTCTCTAAAATTCTCTTTCTCCCAAAAACTAAAAAACCAAAAAAACCAAAAAATGTACGCAATGAAAGAAGAAGACTGTCTTCAAACATTTCACAACTTACAAGACTATCAAGACCAGTTTCATCTTCATCATCATCCACAAATTCTCCCCTGGTCGTCGACATCTTTACCTTCTTTTGACCCACTCCATTTCCCATCTAACCCGACCCGTTATTCTGACCCGGTTCACTACTTCAACAGAAGAGCTTCTTCTTCCTCTTCTTCTTTTGACTATAACGACGGTTTTGTCTCTCCTCCTCCTTCCATGGATCATCCTCAGAACCATCTAAGGATTTTATCCGAAGCTCTTGGACCCATCATGCGTCGTGGCTCGTCCTTTGGGTTCGATGGTGAGATCATGGGAAAATTGAGTGCACAAGAAGTCATGGATGCTAAGGCTTTAGCTGCTTCAAAGAGTCATAGTGAAGCTGAGAGAAGAAGACGAGAGAGAATCAACACTCATCTTGCTAAGCTGCGTAGTATATTACCAAACACAACCAAAACGGACAAAGCTTCTTTGCTAGCGGAAGTGATCCAACACATGAAGGAGCTAAAACGACAAACATCACAGATCACCGACACGTATCAAGTCCCAACAGAGTGCGATGATCTGACCGTAGATTCGTCTTACAACGACGAGGAAGGAAACTTGGTGATAAGAGCATCCTTTTGCTGCCAAGACAGGACTGACCTCATGCATGACGTCATCAATGCCTTAAAGTCTCTTCGTCTTCGAACTCTCAAAGCTGAGATCGCAACCGTAGGTGGTAGAGTCAAGAACATCTTGTTCTTGAGCCGAGAATACGATGATGAAGAAGATCATGATTCATATCGTAGAAACTTCGATGGTGATGACGTGGAGGATTATGATGAAGAGAGGATGATGAATAATCGTGTGAGTTCGATAGAAGAAGCGTTAAAGGCGGTTATAGAGAAGTGTGTTCATAATAATGATGAAAGTAACGATAACAATAACTTGGAGAAATCATCTTCAGGGGGTATTAAGAGGCAAAGGACTAGTAAGATGGTGAATCGATGTTATAATTAGTTAATTAAGTCAAGTCTTTATTAACTAGGGTTAGTTAATTAGACTTGCAAAATGGGATTTGATTATGGGTTGGTGATATTAGTATTATTTTCGGTGTTTTTAGTAGTTGGGATTGGGTTTCTTCTTCTATGTTTTTTTAATCTATGAAGAACCCTTTGTTTAGGGTTTTATAGTGATGAGTTTGGTTTATATATGGTAGTTAAGACATTTTATCGTCTTAATTAATATAGGAAATGTATAGAGCTTGGGTTTGTATTAATTTATCAAGAAGTTTTATTTATCATATTCATGAACTCTGCAACTATTTAATCTTTTGTTTATAAGCAACAACACTACGTAGTAATAGTATAGAGTATAGTTTTATACTTGTCAATTTATTTTCTATTGTGAC
CDS Sequence
- >AT3G25710.1
ATGTACGCAATGAAAGAAGAAGACTGTCTTCAAACATTTCACAACTTACAAGACTATCAAGACCAGTTTCATCTTCATCATCATCCACAAATTCTCCCCTGGTCGTCGACATCTTTACCTTCTTTTGACCCACTCCATTTCCCATCTAACCCGACCCGTTATTCTGACCCGGTTCACTACTTCAACAGAAGAGCTTCTTCTTCCTCTTCTTCTTTTGACTATAACGACGGTTTTGTCTCTCCTCCTCCTTCCATGGATCATCCTCAGAACCATCTAAGGATTTTATCCGAAGCTCTTGGACCCATCATGCGTCGTGGCTCGTCCTTTGGGTTCGATGGTGAGATCATGGGAAAATTGAGTGCACAAGAAGTCATGGATGCTAAGGCTTTAGCTGCTTCAAAGAGTCATAGTGAAGCTGAGAGAAGAAGACGAGAGAGAATCAACACTCATCTTGCTAAGCTGCGTAGTATATTACCAAACACAACCAAAACGGACAAAGCTTCTTTGCTAGCGGAAGTGATCCAACACATGAAGGAGCTAAAACGACAAACATCACAGATCACCGACACGTATCAAGTCCCAACAGAGTGCGATGATCTGACCGTAGATTCGTCTTACAACGACGAGGAAGGAAACTTGGTGATAAGAGCATCCTTTTGCTGCCAAGACAGGACTGACCTCATGCATGACGTCATCAATGCCTTAAAGTCTCTTCGTCTTCGAACTCTCAAAGCTGAGATCGCAACCGTAGGTGGTAGAGTCAAGAACATCTTGTTCTTGAGCCGAGAATACGATGATGAAGAAGATCATGATTCATATCGTAGAAACTTCGATGGTGATGACGTGGAGGATTATGATGAAGAGAGGATGATGAATAATCGTGTGAGTTCGATAGAAGAAGCGTTAAAGGCGGTTATAGAGAAGTGTGTTCATAATAATGATGAAAGTAACGATAACAATAACTTGGAGAAATCATCTTCAGGGGGTATTAAGAGGCAAAGGACTAGTAAGATGGTGAATCGATGTTATAATTAG
Protein Sequence
- >AT3G25710.1
MYAMKEEDCLQTFHNLQDYQDQFHLHHHPQILPWSSTSLPSFDPLHFPSNPTRYSDPVHYFNRRASSSSSSFDYNDGFVSPPPSMDHPQNHLRILSEALGPIMRRGSSFGFDGEIMGKLSAQEVMDAKALAASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQITDTYQVPTECDDLTVDSSYNDEEGNLVIRASFCCQDRTDLMHDVINALKSLRLRTLKAEIATVGGRVKNILFLSREYDDEEDHDSYRRNFDGDDVEDYDEERMMNNRVSSIEEALKAVIEKCVHNNDESNDNNNLEKSSSGGIKRQRTSKMVNRCYN