Information report for AT3G25600
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen tube cell , pollen
Literature and News
- Analysis of EF-hand-containing proteins in Arabidopsis. DOI: 10.1186/gb-2002-3-10-research0056 ; PMID: 12372144
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- and darkness-regulated Arabidopsis genes: a focus on calmodulin-like and XTH genes. DOI: 10.1111/j.1469-8137.2004.01238.x ; PMID: 15720654
- Handling calcium signaling: Arabidopsis CaMs and CMLs. DOI: 10.1016/j.tplants.2005.07.001 ; PMID: 16023399
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. DOI: 10.1094/MPMI-19-0665 ; PMID: 16776300
- Transcriptional responses of Arabidopsis thaliana ecotypes with different glucosinolate profiles after attack by polyphagous Myzus persicae and oligophagous Brevicoryne brassicae. DOI: 10.1093/jxb/erm043 ; PMID: 17545220
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Arabidopsis Calmodulin-Like Proteins, CML15 and CML16 Possess Biochemical Properties Distinct from Calmodulin and Show Non-overlapping Tissue Expression Patterns. DOI: 10.3389/fpls.2017.02175 ; PMID: 29312414
- AP1G2 Affects Mitotic Cycles of Female and Male Gametophytes in Arabidopsis. DOI: 10.3389/fpls.2022.924417 ; PMID: 35873977
- Handling calcium signaling: Arabidopsis CaMs and CMLs. DOI: 10.1016/j.tplants.2005.07.001 ; PMID: 16023399
Gene Resources
- UniProt: A0A178VDG2
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VDG2
- EnsemblPlants: AT3G25600.1
- Gramene: AT3G25600.1
- KEGG: ath:AT3G25600
- Orthologous matrix: HAIMPDL
- ExpressionAtlas: AT3G25600
- InterPro: IPR002048, IPR011992, IPR018247
- PANTHER: PTHR23048, PTHR23048:SF52
- SUPFAM: SSF47473
- PROSITE: PS00018, PS50222
- Gene3D: 1.10.238.10
- OrthoDB: A0A178VDG2
- SWISS-MODEL: A0A178VDG2
Homologs
- Daucus carota DCAR_023706
- Hordeum vulgare HvCaM1
- Malus domestica MdCaM2
- Oryza sativa OsCam3, OsCam1-1, OsCam1-3;OsCaM1-3, OsCam2, OsCaM61, OsCML3, OsCML4
- Prunus avium Pav_sc0000636.1_g330.1.mk
- Solanum lycopersicum Solyc04g006930.3, Solyc02g091500.1
- Triticum aestivum TaCaM3-4B, TaCaM3-2D, TaCaM3-2A, TaCaM3-4D, TaCaM3-4A, TaCaM3-2B
Sequences
cDNA Sequence
- >AT3G25600.1
ATTCCAAATAATTACTGCACAACATTTTTTATAAGTTTAATGCGGAAGGTGAAGAATGAATGGTACTTTAAATTCTTATATAGTAAATAAATGATTAAGAAAAACCCTACTTCAACTATTTTTATAATTGTGGGAGATATTACAACGAAATTTAGTAGGTTAACTAGATTTACTTTATTGAATTTTCACATCACCAAACAATCATAAAGAATTTTCTCAAATAACAGCCTGTGTAAAATAAAACAATACACTATGAAATAAAAGAATTGGTAACGGTCCATTTGAATATTATTTTATCACATATAAGCTGTGTGATGTGCTTCCTACCCAATTTCCAATTTAATGATTTCACCGTCAATCCCACTTTAATTTGTCTCCACATATTAATATCTTATCAATAATTGAAACAGTACCAATCTATAAATCTATAGATAATGTAATAAAATTTTGAATTTACTATTTCAACTAAAAATATTATCAACTTCTTCTCCAAAAACGCGGTTTCTTCGAGTTTAAGAAACTATTCATCTCCAAACTTTCAAAAAAAAACCTAAAACAAAAAAAATCTCTTTCCTTCTTCTTTCTCCATCAATGGCGTCAACAAAACCAACCGATCAAATCAAACAACTCAAAGATATCTTCGCTCGTTTCGACATGGACAAGGACGGAAGCTTAACGCAGCTAGAACTCGCCGCTCTTCTGCGTTCTCTCGGAATCAAACCTCGCGGCGATCAAATCTCTCTTCTGTTGAACCAAATCGACCGTAACGGTAACGGATCCGTAGAGTTCGACGAGCTGGTCGTGGCGATATTGCCGGATATAAACGAAGAGGTTTTGATAAATCAAGAACAGTTGATGGAGGTTTTCCGTTCGTTTGATCGTGACGGAAACGGTTCAATAACGGCGGCGGAACTTGCTGGGTCAATGGCTAAAATGGGACATCCGTTGACTTACCGTGAATTAACGGAAATGATGACGGAAGCTGATTCTAACGGTGACGGTGTTATTAGTTTTAATGAGTTTTCTCATATTATGGCTAAATCGGCTGCTGATTTTCTTGGATTAACCGCTTCTTGATCTGTTTTGTTTTAATTACTCTCTTTTTTTCTTCTCCTGTCAATGCAACTTGTGCAATTTAACAATGTGCTAATCTTCATTAATTTATTTATGACTCGTTTGGTGTGACGTAAAA
CDS Sequence
- >AT3G25600.1
ATGGCGTCAACAAAACCAACCGATCAAATCAAACAACTCAAAGATATCTTCGCTCGTTTCGACATGGACAAGGACGGAAGCTTAACGCAGCTAGAACTCGCCGCTCTTCTGCGTTCTCTCGGAATCAAACCTCGCGGCGATCAAATCTCTCTTCTGTTGAACCAAATCGACCGTAACGGTAACGGATCCGTAGAGTTCGACGAGCTGGTCGTGGCGATATTGCCGGATATAAACGAAGAGGTTTTGATAAATCAAGAACAGTTGATGGAGGTTTTCCGTTCGTTTGATCGTGACGGAAACGGTTCAATAACGGCGGCGGAACTTGCTGGGTCAATGGCTAAAATGGGACATCCGTTGACTTACCGTGAATTAACGGAAATGATGACGGAAGCTGATTCTAACGGTGACGGTGTTATTAGTTTTAATGAGTTTTCTCATATTATGGCTAAATCGGCTGCTGATTTTCTTGGATTAACCGCTTCTTGA
Protein Sequence
- >AT3G25600.1
MASTKPTDQIKQLKDIFARFDMDKDGSLTQLELAALLRSLGIKPRGDQISLLLNQIDRNGNGSVEFDELVVAILPDINEEVLINQEQLMEVFRSFDRDGNGSITAAELAGSMAKMGHPLTYRELTEMMTEADSNGDGVISFNEFSHIMAKSAADFLGLTAS