Information report for AT3G25540
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. DOI: 10.1074/jbc.M307321200 ; PMID: 12912986
- DNA array analyses of Arabidopsis thaliana lacking a vacuolar Na+/H+ antiporter: impact of AtNHX1 on gene expression. DOI: 10.1111/j.1365-313X.2004.02253.x ; PMID: 15546358
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2008.03596.x ; PMID: 18643979
- Sphingolipids containing very-long-chain fatty acids define a secretory pathway for specific polar plasma membrane protein targeting in Arabidopsis. DOI: 10.1105/tpc.110.080473 ; PMID: 21666002
- Acyl-lipid metabolism. DOI: 10.1199/tab.0161 ; PMID: 23505340
- Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis. DOI: 10.1371/journal.pgen.1005143 ; PMID: 25822663
- Overexpression of Arabidopsis Ceramide Synthases Differentially Affects Growth, Sphingolipid Metabolism, Programmed Cell Death, and Mycotoxin Resistance. DOI: 10.1104/pp.15.00987 ; PMID: 26276842
- Dissecting the regulatory roles of ORM proteins in the sphingolipid pathway of plants. DOI: 10.1371/journal.pcbi.1008284 ; PMID: 33507896
- The immune components ENHANCED DISEASE SUSCEPTIBILITY 1 and PHYTOALEXIN DEFICIENT 4 are required for cell death caused by overaccumulation of ceramides in Arabidopsis. DOI: 10.1111/tpj.15393 ; PMID: 34180563
- The Two Classes of Ceramide Synthases Play Different Roles in Plant Immunity and Cell Death. DOI: 10.3389/fpls.2022.824585 ; PMID: 35463421
- Overexpression of a ceramide synthase gene,GhCS1, inhibits fiber cell initiation and elongation by promoting the synthesis of ceramides containing dihydroxy LCB and VLCFA. DOI: 10.3389/fpls.2022.1000348 ; PMID: 36119591
- Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. DOI: 10.1074/jbc.M307321200 ; PMID: 12912986
- Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. DOI: 10.1074/mcp.T300006-MCP200 ; PMID: 14506206
- Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2008.03596.x ; PMID: 18643979
Gene Resources
- UniProt: A0A1I9LTU4
- EMBL: CP002686
- AlphaFoldDB: A0A1I9LTU4
- EnsemblPlants: AT3G25540.2
- Gramene: AT3G25540.2
- ExpressionAtlas: AT3G25540
- InterPro: IPR006634, IPR016439
- PANTHER: PTHR12560, PTHR12560:SF45
- PROSITE: PS50922
- SWISS-MODEL: A0A1I9LTU4
Homologs
- Gossypium hirsutum Gh_D13G0393, Gh_D12G0217, Gh_A13G0350
- Solanum lycopersicum Asc-1
Sequences
cDNA Sequence
- >AT3G25540.2
AAAATTTGAAAAAGAAAATAAAGCTTTTAGAAAAAGAAAAAAAATAAAAAAAAAAAAAAAACAAGAGCCCATCGAGAATGGATCAGTAAAAAACCTAAGGCCTATCTCCAGCAAGTGCAACTTACATACATTCTCGAATAAATTCTGATCCGATCAAGAACTCATAATTATTGTAACAGATAAAATCAAATTTGAGAGATCTACTACTAAATCTAACTTAAAGCATTGTACTTTCTTTTATCTCATTCTCCTTTGCTCTGCTTTCTTCTGGTCAACCCCCACGAGATTCCTTCTTATGTGATTGTAAAGAGAAGATTTTTCAGAGATGGGTCTCTTCGAATCGGTGAAATCAATCGATTGGGAACAAGAATCGTTCCCAACTTATCAAGATTTAGGGTTTTTGCCTCTCTTTGCAGTGTTCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAGAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACAACATAAAAGACAGGAAGAAAAATAGTCCAAAAGTTCGAAAATTTAAAGAATCAGCTTGGAAGTGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTCACATATAATGAACCTTGGTTTTCAAATACTCTCTACTTTTGGATTGGTCCTGGAGATCAGATTTGGCCTGATCAACCAATGAAGATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCCATGGGTCATCATATCACAACGCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCTAAATATTGCGGAGCGGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGAGGTTTGTTTAATATCCACTTTAGCGTTTGTTCTTGAATGTTTTTTCCTTGATGTATATATATTGTGGGGTTTTGATTTGCAGCTATCAAATCATTATGACTGTGGACAAAGAAAAGCATCCTAATGGACCAATCTTGTACTATATGTTCAACACACTTTTGTATTTCTTGCTTGTTCTTCACATATTCTGGTGGGTTTTGATTTACCGGATGCTTGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCGATTCTGAAAGCGATGATGAACACGAGGATTAATCGCATGTTGGGAATATTAGTAGTGCACACGCTCTATATCTCATGAATCTGAACCACACGGAGACTAGGAATTTCAACATCAAGTAGGATGCATTGCAGTATTTGAACAGTTGGTTCATCATCTTCCAGAGGATCGTAACCGGATCAAACCGTTTTGAATGAATCGGTTTCTCAATCTGAATTTTTGAGTTTATTGTTTTCTCTAAAGTTTGAGCAAATTCAAGATTTTGATCAAACTGCTCCACGTTCTATTGTTTTTTCTTCTATAATTTTTAATTTACGCTTTTGCAATAACACAATTCCTTGTATCATTATACTAATGTCATCTCAAAATTAGCTCCCTTCAACATCTATGCAACAGACTAACAACTAAATGAATTTTCTTGGGGTTTTTTTTGGTTCATTGCATAATTTGATAAAATCC - >AT3G25540.3
AAAATTTGAAAAAGAAAATAAAGCTTTTAGAAAAAGAAAAAAAATAAAAAAAAAAAAAAAACAAGAGCCCATCGAGAATGGATCAGTAAAAAACCTAAGGCCTATCTCCAGCAAGTGCAACTTACATACATTCTCGAATAAATTCTGATCCGATCAAGAACTCATAATTATTGTAACAGATAAAATCAAATTTGAGAGATCTACTACTAAATCTAACTTAAAGCATTGTACTTTCTTTTATCTCATTCTCCTTTGCTCTGCTTTCTTCTGGTCAACCCCCACGAGATTCCTTCTTATGTGATTGTAAAGAGAAGATTTTTCAGAGATGGGTCTCTTCGAATCGGTGAAATCAATCGATTGGGAACAAGAATCGTTCCCAACTTATCAAGATTTAGGGTTTTTGCCTCTCTTTGCAGTGTTCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAGAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACAACATAAAAGACAGGAAGAAAAATAGTCCAAAAGTTCGAAAATTTAAAGAATCAGCTTGGAAGTGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTCACATATAATGAACCTTGGTTTTCAAATACTCTCTACTTTTGGATTGGTCCTGGAGATCAGATTTGGCCTGATCAACCAATGAAGATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCCATGGGTCATCATATCACAACGCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCTAAATATTGCGGAGCGGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGAGGTTTGTTTAATATCCACTTTAGCGTTTGTTCTTGAATGTTTTTTCCTTGATGTATATATATTGTGGGGTTTTGATTTGCAGCTATCAAATCATTATGACTGTGGACAAAGAAAAGCATCCTAATGGACCAATCTTGTACTATATGTTCAACACACTTTTGTATTTCTTGCTTGTTCTTCACATATTCTGGTGGGTTTTGATTTACCGGATGCTTGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCGATTCTGAAAGCGATGATGAACACGAGGATTAATCGCATGTTGGGAATATTAGTAGTGCACACGCTCTATATCTCATGAATCTGAACCACACGGAGACTAGGAATTTCAACATCAAGTAGGATGCATTGCAGTATTTGAACAGTTGGTTCATCATCTTCCAGAGGATCGTAACCGGATCAAACCGTTTTGAATGAATCGGTTTCTCAATCTGAATTTTTGAGTTTATTGTTTTCTCTAAAGTTTGAGCAAATTCAAGATTTTGATCAAACTGCTCCACGTTCTATTGTTTTTTCTTCTATAATTTTTAATTTACGCTTTTGCAATAACACAATTCCTTGTATCATTATACTAATGTCATCTCAAAATTAGCTCCCTTCAACATCTATGCAACAGACTAACAACTAAATGAATTTTCTTGGGGTTTTTTTTGGTTCATTGCATAATTTGATAAAATCC - >AT3G25540.1
AAAATTTGAAAAAGAAAATAAAGCTTTTAGAAAAAGAAAAAAAATAAAAAAAAAAAAAAAACAAGAGCCCATCGAGAATGGATCAGTAAAAAACCTAAGGCCTATCTCCAGCAAGTGCAACTTACATACATTCTCGAATAAATTCTGATCCGATCAAGAACTCATAATTATTGTAACAGATAAAATCAAATTTGAGAGATCTACTACTAAATCTAACTTAAAGCATTGTACTTTCTTTTATCTCATTCTCCTTTGCTCTGCTTTCTTCTGGTCAACCCCCACGAGATTCCTTCTTATGTGATTGTAAAGAGAAGATTTTTCAGAGATGGGTCTCTTCGAATCGGTGAAATCAATCGATTGGGAACAAGAATCGTTCCCAACTTATCAAGATTTAGGGTTTTTGCCTCTCTTTGCAGTGTTCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAGAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACAACATAAAAGACAGGAAGAAAAATAGTCCAAAAGTTCGAAAATTTAAAGAATCAGCTTGGAAGTGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTCACATATAATGAACCTTGGTTTTCAAATACTCTCTACTTTTGGATTGGTCCTGGAGATCAGATTTGGCCTGATCAACCAATGAAGATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCCATGGGTCATCATATCACAACGCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCTAAATATTGCGGAGCGGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGAGGTTTGTTTAATATCCACTTTAGCGTTTGTTCTTGAATGTTTTTTCCTTGATGTATATATATTGTGGGGTTTTGATTTGCAGCTATCAAATCATTATGACTGTGGACAAAGAAAAGCATCCTAATGGACCAATCTTGTACTATATGTTCAACACACTTTTGTATTTCTTGCTTGTTCTTCACATATTCTGGTGGGTTTTGATTTACCGGATGCTTGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCGATTCTGAAAGCGATGATGAACACGAGGATTAATCGCATGTTGGGAATATTAGTAGTGCACACGCTCTATATCTCATGAATCTGAACCACACGGAGACTAGGAATTTCAACATCAAGTAGGATGCATTGCAGTATTTGAACAGTTGGTTCATCATCTTCCAGAGGATCGTAACCGGATCAAACCGTTTTGAATGAATCGGTTTCTCAATCTGAATTTTTGAGTTTATTGTTTTCTCTAAAGTTTGAGCAAATTCAAGATTTTGATCAAACTGCTCCACGTTCTATTGTTTTTTCTTCTATAATTTTTAATTTACGCTTTTGCAATAACACAATTCCTTGTATCATTATACTAATGTCATCTCAAAATTAGCTCCCTTCAACATCTATGCAACAGACTAACAACTAAATGAATTTTCTTGGGGTTTTTTTTGGTTCATTGCATAATTTGATAAAATCC
CDS Sequence
- >AT3G25540.2
ATGGGTCTCTTCGAATCGGTGAAATCAATCGATTGGGAACAAGAATCGTTCCCAACTTATCAAGATTTAGGGTTTTTGCCTCTCTTTGCAGTGTTCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAGAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACAACATAAAAGACAGGAAGAAAAATAGTCCAAAAGTTCGAAAATTTAAAGAATCAGCTTGGAAGTGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTCACATATAATGAACCTTGGTTTTCAAATACTCTCTACTTTTGGATTGGTCCTGGAGATCAGATTTGGCCTGATCAACCAATGAAGATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCCATGGGTCATCATATCACAACGCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCTAAATATTGCGGAGCGGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGAGGTTTGTTTAA - >AT3G25540.3
ATGGGTCTCTTCGAATCGGTGAAATCAATCGATTGGGAACAAGAATCGTTCCCAACTTATCAAGATTTAGGGTTTTTGCCTCTCTTTGCAGTGTTCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAGAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACAACATAAAAGACAGGAAGAAAAATAGTCCAAAAGTTCGAAAATTTAAAGAATCAGCTTGGAAGTGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTCACATATAATGAACCTTGGTTTTCAAATACTCTCTACTTTTGGATTGGTCCTGGAGATCAGATTTGGCCTGATCAACCAATGAAGATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCCATGGGTCATCATATCACAACGCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCTAAATATTGCGGAGCGGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGAGGTTTGTTTAA - >AT3G25540.1
ATGGGTCTCTTCGAATCGGTGAAATCAATCGATTGGGAACAAGAATCGTTCCCAACTTATCAAGATTTAGGGTTTTTGCCTCTCTTTGCAGTGTTCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAGAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACAACATAAAAGACAGGAAGAAAAATAGTCCAAAAGTTCGAAAATTTAAAGAATCAGCTTGGAAGTGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTCACATATAATGAACCTTGGTTTTCAAATACTCTCTACTTTTGGATTGGTCCTGGAGATCAGATTTGGCCTGATCAACCAATGAAGATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCCATGGGTCATCATATCACAACGCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCTAAATATTGCGGAGCGGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGAGGTTTGTTTAA
Protein Sequence
- >AT3G25540.2
MGLFESVKSIDWEQESFPTYQDLGFLPLFAVFFPTIRFLLDRFVFEKLASLVIYGRMSTNKSDNIKDRKKNSPKVRKFKESAWKCIYYLSAELLALSVTYNEPWFSNTLYFWIGPGDQIWPDQPMKMKLKFLYMFAAGFYTYSIFALVFWETRRSDFGVSMGHHITTLVLIVLSYICRLTRAGSVILALHDASDVFLEIGKMSKYCGAESLASISFVLFALSWVVLRLIYYPFWILWSTRFV - >AT3G25540.3
MGLFESVKSIDWEQESFPTYQDLGFLPLFAVFFPTIRFLLDRFVFEKLASLVIYGRMSTNKSDNIKDRKKNSPKVRKFKESAWKCIYYLSAELLALSVTYNEPWFSNTLYFWIGPGDQIWPDQPMKMKLKFLYMFAAGFYTYSIFALVFWETRRSDFGVSMGHHITTLVLIVLSYICRLTRAGSVILALHDASDVFLEIGKMSKYCGAESLASISFVLFALSWVVLRLIYYPFWILWSTRFV - >AT3G25540.1
MGLFESVKSIDWEQESFPTYQDLGFLPLFAVFFPTIRFLLDRFVFEKLASLVIYGRMSTNKSDNIKDRKKNSPKVRKFKESAWKCIYYLSAELLALSVTYNEPWFSNTLYFWIGPGDQIWPDQPMKMKLKFLYMFAAGFYTYSIFALVFWETRRSDFGVSMGHHITTLVLIVLSYICRLTRAGSVILALHDASDVFLEIGKMSKYCGAESLASISFVLFALSWVVLRLIYYPFWILWSTRFV