Gene Details:
- Gene ID: AT3G24480
- Gene Symbol: LRX4
- Gene Name: leucine-rich repeat extensin 4
- Description: Leucine-rich repeat (LRR) family protein;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Function-related keywords:
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , guard cell
Literature:
- Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade. DOI: 10.1104/pp.102.014928 ; PMID: 12644681
- Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. DOI: 10.1093/pcp/pch099 ; PMID: 15215502
- Arabidopsis cell wall proteome defined using multidimensional protein identification technology. DOI: 10.1002/pmic.200500046 ; PMID: 16287169
- A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers. DOI: 10.1186/1471-2229-8-94 ; PMID: 18796151
- Identification and Characterization of Arabidopsis Seed Coat Mucilage Proteins. DOI: 10.1104/pp.16.01600 ; PMID: 28003327
- Leucine-rich repeat extensin proteins regulate plant salt tolerance in Arabidopsis. DOI: 10.1073/pnas.1816991115 ; PMID: 30514814
- Arabidopsis cell wall proteome defined using multidimensional protein identification technology. DOI: 10.1002/pmic.200500046 ; PMID: 16287169
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Sequences:
cDNA Sequence
- >AT3G24480.1
CGAATAAGTAAGTGTAGGCCTGAGCTGTGTTTGAGCTGTCTTCTCTCTTTCATTTAAATCCCCACACTCACTCTCTCTCTCTCCCTCACAAAACTCAAAAATCCTCTCCCAACTTTCTCATTTCCCATTTTACCCTTCTTCCTCCTTCGAATTTTCAAACCTCTACCACTCCTCACGCAGATGTATCGTATCGTGAAATGAAGAACAACACCACTCAATCTCTCCTTCTCCTTCTCCTCTTCTTCTTCTTCTTCTTTGAAATCTCTCATTCTCTCTCAATCTCATCCAATGCTCCTCTCTCCGACACCGAAGTCAGATTCATCCAACGCCGTCAACTTCTCTACTACCGCGACGAGTTCGGTGACCGTGGTGAGAATGTCACAGTAGATCCATCACTAATCTTCGAGAATCCGCGGCTTCGTAGTGCTTACATAGCTCTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCTAATAATATCACTGTTAATTGGATCGGATCCAATGTCTGTAACTACACCGGAGTTTTCTGTTCTAAAGCTCTTGATAACCGGAAGATCCGTACCGTCGCCGGAATCGATCTCAACCACGCCGATATCGCTGGGTATTTACCTGAAGAGCTTGGTTTGTTAACAGATCTAGCTTTGTTTCATGTTAATTCGAATCGATTCTGTGGTACTGTTCCTCATAAGTTCAAGCAGCTTAAGCTTTTGTTCGAGCTTGATCTTAGTAACAATCGGTTCGCCGGAAAGTTTCCCACGGTGGTTCTTCATTTGCCGTCGTTGAAGTTCTTAGATCTCCGGTTTAATGAGTTTGAAGGAACCGTACCGAAAGAGCTTTTTAGTAAAAATCTAGATGCGATTTTTATAAACCATAACCGGTTCCGGTTTGAGTTACCGGAAAATTTCGGTGATTCTCCGGTTTCGGTTATTGTTCTTGCGAATAATCATTTCCATGGTTGTATTCCGACGAGTTTGGTGGAGATGAAGAATCTTAATGAGATTATTTTCATGAACAATGGTTTGAATTCTTGTTTACCGGCGGATATCGGAAGGTTGAAGAATGTGACGGTGTTTGATGTTAGTTTTAATGAGCTTGTTGGTCCGTTGCCGGAGAGTGTTGGTGGTATGGTGGAGGTTGAGCAGTTGAATGTTGCTCATAATTTGTTATCTGGGAAGATTCCGGCGAGTATTTGTCAGCTTCCTAAGCTTGAGAATTTCACTTATAGTTATAATTTCTTTACTGGTGAAGCTCCTGTGTGTTTGAGGTTGTCTGAGTTTGATGATCGGAGAAATTGTTTGCCCGGAAGACCTGCTCAGAGATCTTCACGGCAATGTTCAGCTTTCTTGTCACGGCCTTCGGTGGATTGTGGATCTTTTGGTTGTGGTCGTTCTGTTGTTAAACCGTCTCCACCTATTGTAGCATTACCGCCGCCTCCTCCGCCATCGCCTCCGTTACCTCCACCTGTTTACTCTCCTCCGCCGTCACCTCCTGTCTTCTCTCCTCCACCGTCACCCCCTGTATACTCTCCTCCACCGCCACCATCAATCCATTACAGTTCTCCTCCTCCACCGCCAGTCCATCACAGTTCTCCTCCACCACCATCACCTGAATTTGAAGGGCCATTACCGCCGGTGATCGGAGTATCCTATGCATCTCCCCCACCACCACCCTTCTATTGA
CDS Sequence
- >AT3G24480.1
ATGAAGAACAACACCACTCAATCTCTCCTTCTCCTTCTCCTCTTCTTCTTCTTCTTCTTTGAAATCTCTCATTCTCTCTCAATCTCATCCAATGCTCCTCTCTCCGACACCGAAGTCAGATTCATCCAACGCCGTCAACTTCTCTACTACCGCGACGAGTTCGGTGACCGTGGTGAGAATGTCACAGTAGATCCATCACTAATCTTCGAGAATCCGCGGCTTCGTAGTGCTTACATAGCTCTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCTAATAATATCACTGTTAATTGGATCGGATCCAATGTCTGTAACTACACCGGAGTTTTCTGTTCTAAAGCTCTTGATAACCGGAAGATCCGTACCGTCGCCGGAATCGATCTCAACCACGCCGATATCGCTGGGTATTTACCTGAAGAGCTTGGTTTGTTAACAGATCTAGCTTTGTTTCATGTTAATTCGAATCGATTCTGTGGTACTGTTCCTCATAAGTTCAAGCAGCTTAAGCTTTTGTTCGAGCTTGATCTTAGTAACAATCGGTTCGCCGGAAAGTTTCCCACGGTGGTTCTTCATTTGCCGTCGTTGAAGTTCTTAGATCTCCGGTTTAATGAGTTTGAAGGAACCGTACCGAAAGAGCTTTTTAGTAAAAATCTAGATGCGATTTTTATAAACCATAACCGGTTCCGGTTTGAGTTACCGGAAAATTTCGGTGATTCTCCGGTTTCGGTTATTGTTCTTGCGAATAATCATTTCCATGGTTGTATTCCGACGAGTTTGGTGGAGATGAAGAATCTTAATGAGATTATTTTCATGAACAATGGTTTGAATTCTTGTTTACCGGCGGATATCGGAAGGTTGAAGAATGTGACGGTGTTTGATGTTAGTTTTAATGAGCTTGTTGGTCCGTTGCCGGAGAGTGTTGGTGGTATGGTGGAGGTTGAGCAGTTGAATGTTGCTCATAATTTGTTATCTGGGAAGATTCCGGCGAGTATTTGTCAGCTTCCTAAGCTTGAGAATTTCACTTATAGTTATAATTTCTTTACTGGTGAAGCTCCTGTGTGTTTGAGGTTGTCTGAGTTTGATGATCGGAGAAATTGTTTGCCCGGAAGACCTGCTCAGAGATCTTCACGGCAATGTTCAGCTTTCTTGTCACGGCCTTCGGTGGATTGTGGATCTTTTGGTTGTGGTCGTTCTGTTGTTAAACCGTCTCCACCTATTGTAGCATTACCGCCGCCTCCTCCGCCATCGCCTCCGTTACCTCCACCTGTTTACTCTCCTCCGCCGTCACCTCCTGTCTTCTCTCCTCCACCGTCACCCCCTGTATACTCTCCTCCACCGCCACCATCAATCCATTACAGTTCTCCTCCTCCACCGCCAGTCCATCACAGTTCTCCTCCACCACCATCACCTGAATTTGAAGGGCCATTACCGCCGGTGATCGGAGTATCCTATGCATCTCCCCCACCACCACCCTTCTATTGA
Protein Sequence
- >AT3G24480.1
MKNNTTQSLLLLLLFFFFFFEISHSLSISSNAPLSDTEVRFIQRRQLLYYRDEFGDRGENVTVDPSLIFENPRLRSAYIALQAWKQAILSDPNNITVNWIGSNVCNYTGVFCSKALDNRKIRTVAGIDLNHADIAGYLPEELGLLTDLALFHVNSNRFCGTVPHKFKQLKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNRFRFELPENFGDSPVSVIVLANNHFHGCIPTSLVEMKNLNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQCSAFLSRPSVDCGSFGCGRSVVKPSPPIVALPPPPPPSPPLPPPVYSPPPSPPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSSPPPPSPEFEGPLPPVIGVSYASPPPPPFY