Information report for AT3G24220
Gene Details
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Functional Descriptions
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0000201 — chalazal cyst — ciste calazal (Spanish, exact), portion of chalazal cyst (exact), カラザの嚢 (Japanese, exact), chalazal endosperm cyst (related)
- PO:0009089 — endosperm — albumen (exact), endosperma (Spanish, exact), 内胚乳、胚乳 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Literature and News
- Abscisic acid regulation of gene expression during water-deficit stress in the era of the Arabidopsis genome. DOI: 10.1046/j.1365-3040.2002.00746.x ; PMID: 11841660
- Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis. DOI: 10.1046/j.1365-313x.2001.01096.x ; PMID: 11532178
- Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family. DOI: 10.1046/j.1365-313x.2003.01786.x ; PMID: 12834401
- Abscisic acid biosynthesis and catabolism. DOI: 10.1146/annurev.arplant.56.032604.144046 ; PMID: 15862093
- Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy. DOI: 10.1111/j.1365-313X.2005.02622.x ; PMID: 16412079
- Seed dormancy and ABA metabolism in Arabidopsis and barley: the role of ABA 8'-hydroxylase. DOI: 10.1111/j.1365-313X.2006.02659.x ; PMID: 16507085
- Regulation of hormone metabolism in Arabidopsis seeds: phytochrome regulation of abscisic acid metabolism and abscisic acid regulation of gibberellin metabolism. DOI: 10.1111/j.1365-313X.2006.02881.x ; PMID: 17010113
- PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds. DOI: 10.1105/tpc.107.050153 ; PMID: 17449805
- SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5. DOI: 10.1105/tpc.108.058859 ; PMID: 18487351
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members. DOI: 10.1111/j.1365-313X.2011.04887.x ; PMID: 22171989
- Dormancy cycling in Arabidopsis seeds is controlled by seasonally distinct hormone-signaling pathways. DOI: 10.1073/pnas.1116325108 ; PMID: 22128331
- Proanthocyanidins inhibit seed germination by maintaining a high level of abscisic acid in Arabidopsis thaliana. DOI: 10.1111/j.1744-7909.2012.01142.x ; PMID: 22765383
- Temperature, light and nitrate sensing coordinate Arabidopsis seed dormancy cycling, resulting in winter and summer annual phenotypes. DOI: 10.1111/tpj.12186 ; PMID: 23590427
- The Arabidopsis MYB96 transcription factor plays a role in seed dormancy. DOI: 10.1007/s11103-015-0283-4 ; PMID: 25616734
- ABI4 mediates antagonistic effects of abscisic acid and gibberellins at transcript and protein levels. DOI: 10.1111/tpj.13109 ; PMID: 26708041
- Multi-omics Analysis Reveals Sequential Roles for ABA during Seed Maturation. DOI: 10.1104/pp.19.00338 ; PMID: 30948555
- REVERSAL OF RDO5 1, a Homolog of Rice Seed Dormancy4, Interacts with bHLH57 and Controls ABA Biosynthesis and Seed Dormancy in Arabidopsis. DOI: 10.1105/tpc.20.00026 ; PMID: 32213638
- The H3K27me3 Demethylase RELATIVE OF EARLY FLOWERING6 Suppresses Seed Dormancy by Inducing Abscisic Acid Catabolism. DOI: 10.1104/pp.20.01255 ; PMID: 33037128
- The phytochrome interacting proteins ERF55 and ERF58 repress light-induced seed germination in Arabidopsis thaliana. DOI: 10.1038/s41467-022-29315-3 ; PMID: 35351902
- Progressive chromatin silencing of ABA biosynthesis genes permits seed germination in Arabidopsis. DOI: 10.1093/plcell/koac134 ; PMID: 35522002
- Disruption of BG14 results in enhanced callose deposition in developing seeds and decreases seed longevity and seed dormancy in Arabidopsis. DOI: 10.1111/tpj.16102 ; PMID: 36625794
- The 9-cis-epoxycarotenoid cleavage reaction is the key regulatory step of abscisic acid biosynthesis in water-stressed bean. DOI: 10.1073/pnas.96.26.15354 ; PMID: 10611388
- Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family. DOI: 10.1046/j.1365-313x.2003.01786.x ; PMID: 12834401
- SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5. DOI: 10.1105/tpc.108.058859 ; PMID: 18487351
Gene Resources
- UniProt: A0A7G2EN28
- EMBL: LR881468
- AlphaFoldDB: A0A7G2EN28
- EnsemblPlants: AT3G24220.1
- Gramene: AT3G24220.1
- KEGG: ath:AT3G24220
- Orthologous matrix: NPYTHHP
- ExpressionAtlas: AT3G24220
- InterPro: IPR004294
- PANTHER: PTHR10543, PTHR10543:SF101
- SWISS-MODEL: A0A7G2EN28
Homologs
- Glycine max GmCCD4
- Oryza sativa OsNCED3, OsNCED5, OsNCED4, OsCCD1, OsNCED1;OsCCD4a, OsNCED2, OsZAS1b, OsZAS1c, OsZAS, D10;OsCCD8, HTD1;OsCCD7
- Triticum aestivum TaNCED2, TaNCED2-5D, TaNCED2-5A, TaNCED2-5B
Sequences
cDNA Sequence
- >AT3G24220.1
GTCGCTCACAAGTCACCACCATGCAACACTCTCTTCGTTCTGATCTTCTTCCGACGAAGACTTCTCCTCGTTCTCATTTACTTCCACAACCCAAAAATGCAAATATTTCTCGACGAATTCTCATTAACCCTTTCAAGATACCGACACTTCCTGATCTCACTTCTCCGGTTCCGTCACCGGTTAAGCTCAAACCAACGTATCCAAACTTAAACCTTCTTCAGAAGCTAGCGGCTACGATGCTCGACAAGATTGAGTCCTCTATCGTTATTCCTATGGAGCAGAATCGCCCGCTTCCTAAACCGACCGACCCGGCGGTTCAATTATCAGGTAACTTCGCTCCGGTTAATGAATGTCCGGTTCAGAACGGTTTAGAAGTGGTTGGTCAGATTCCTTCTTGTCTAAAAGGAGTTTACATCCGTAACGGTGCAAACCCTATGTTTCCGCCGTTAGCCGGACATCATTTATTTGACGGTGACGGAATGATTCACGCCGTTAGTATCGGTTTTGATAACCAGGTTAGTTACAGCTGCCGGTACACTAAAACAAACCGGCTTGTTCAAGAAACCGCGCTTGGACGATCGGTTTTCCCTAAACCAATCGGCGAGCTTCACGGCCATTCCGGTCTAGCTCGACTCGCTCTCTTCACGGCTCGAGCTGGGATCGGTCTAGTGGACGGGACACGTGGCATGGGCGTAGCTAACGCCGGTGTGGTTTTCTTTAACGGCAGGTTATTAGCCATGTCAGAAGATGATCTTCCTTACCAAGTGAAGATCGACGGTCAAGGAGATCTTGAGACGATCGGACGGTTCGGATTCGATGACCAGATTGACTCTTCAGTGATAGCGCATCCTAAGGTGGACGCGACCACAGGAGATCTCCATACACTGAGCTACAACGTTTTGAAGAAACCTCATCTCAGGTATCTTAAATTCAACACGTGCGGGAAAAAGACACGTGACGTGGAGATCACGCTCCCTGAACCAACGATGATTCATGATTTCGCGATAACCGAGAATTTTGTCGTTATACCGGATCAGCAAATGGTATTCAAATTATCCGAAATGATTCGGGGCGGGTCACCCGTTATCTACGTTAAAGAAAAAATGGCGAGATTTGGAGTTTTGTCAAAGCAGGATCTGACCGGGTCGGATATAAATTGGGTTGATGTACCGGATTGTTTCTGTTTCCATCTATGGAATGCGTGGGAAGAGAGAACCGAAGAGGGAGACCCAGTTATCGTCGTAATCGGGTCATGTATGAGCCCACCCGACACGATCTTTAGTGAATCAGGAGAACCAACCCGGGTTGAATTAAGTGAGATCCGGTTAAACATGCGTACAAAAGAATCGAACCGTAAGGTTATCGTAACCGGAGTGAATTTAGAAGCGGGTCACATAAACCGTAGTTACGTGGGCCGGAAAAGCCAGTTCGTTTACATAGCAATAGCCGATCCTTGGCCCAAATGCAGTGGCATTGCGAAGGTAGATATACAAAACGGCACCGTTTCAGAGTTTAATTACGGACCGAGCCGGTTCGGTGGAGAACCGTGCTTTGTACCGGAGGGAGAAGGAGAAGAAGACAAAGGTTATGTAATGGGGTTTGTGAGAGACGAAGAGAAAGACGAGTCGGAGTTTGTGGTGGTCGACGCGACGGATATGAAGCAAGTCGCGGCGGTGCGCTTGCCGGAGAGGGTACCTTATGGTTTCCATGGAACGTTCGTGAGCGAGAATCAGTTGAAGGAACAAGTTTTCTGACTTAGTAGTGTGTATATTCATAATTATATGCTATCTCCTCTTTTTAGGTTTACGTTTAAATTGGTTAATGTGTTGATATTTTTGGGTATAAGAAAGGAGTTATTACATCTTCCATATCATAATTAATATTT
CDS Sequence
- >AT3G24220.1
ATGCAACACTCTCTTCGTTCTGATCTTCTTCCGACGAAGACTTCTCCTCGTTCTCATTTACTTCCACAACCCAAAAATGCAAATATTTCTCGACGAATTCTCATTAACCCTTTCAAGATACCGACACTTCCTGATCTCACTTCTCCGGTTCCGTCACCGGTTAAGCTCAAACCAACGTATCCAAACTTAAACCTTCTTCAGAAGCTAGCGGCTACGATGCTCGACAAGATTGAGTCCTCTATCGTTATTCCTATGGAGCAGAATCGCCCGCTTCCTAAACCGACCGACCCGGCGGTTCAATTATCAGGTAACTTCGCTCCGGTTAATGAATGTCCGGTTCAGAACGGTTTAGAAGTGGTTGGTCAGATTCCTTCTTGTCTAAAAGGAGTTTACATCCGTAACGGTGCAAACCCTATGTTTCCGCCGTTAGCCGGACATCATTTATTTGACGGTGACGGAATGATTCACGCCGTTAGTATCGGTTTTGATAACCAGGTTAGTTACAGCTGCCGGTACACTAAAACAAACCGGCTTGTTCAAGAAACCGCGCTTGGACGATCGGTTTTCCCTAAACCAATCGGCGAGCTTCACGGCCATTCCGGTCTAGCTCGACTCGCTCTCTTCACGGCTCGAGCTGGGATCGGTCTAGTGGACGGGACACGTGGCATGGGCGTAGCTAACGCCGGTGTGGTTTTCTTTAACGGCAGGTTATTAGCCATGTCAGAAGATGATCTTCCTTACCAAGTGAAGATCGACGGTCAAGGAGATCTTGAGACGATCGGACGGTTCGGATTCGATGACCAGATTGACTCTTCAGTGATAGCGCATCCTAAGGTGGACGCGACCACAGGAGATCTCCATACACTGAGCTACAACGTTTTGAAGAAACCTCATCTCAGGTATCTTAAATTCAACACGTGCGGGAAAAAGACACGTGACGTGGAGATCACGCTCCCTGAACCAACGATGATTCATGATTTCGCGATAACCGAGAATTTTGTCGTTATACCGGATCAGCAAATGGTATTCAAATTATCCGAAATGATTCGGGGCGGGTCACCCGTTATCTACGTTAAAGAAAAAATGGCGAGATTTGGAGTTTTGTCAAAGCAGGATCTGACCGGGTCGGATATAAATTGGGTTGATGTACCGGATTGTTTCTGTTTCCATCTATGGAATGCGTGGGAAGAGAGAACCGAAGAGGGAGACCCAGTTATCGTCGTAATCGGGTCATGTATGAGCCCACCCGACACGATCTTTAGTGAATCAGGAGAACCAACCCGGGTTGAATTAAGTGAGATCCGGTTAAACATGCGTACAAAAGAATCGAACCGTAAGGTTATCGTAACCGGAGTGAATTTAGAAGCGGGTCACATAAACCGTAGTTACGTGGGCCGGAAAAGCCAGTTCGTTTACATAGCAATAGCCGATCCTTGGCCCAAATGCAGTGGCATTGCGAAGGTAGATATACAAAACGGCACCGTTTCAGAGTTTAATTACGGACCGAGCCGGTTCGGTGGAGAACCGTGCTTTGTACCGGAGGGAGAAGGAGAAGAAGACAAAGGTTATGTAATGGGGTTTGTGAGAGACGAAGAGAAAGACGAGTCGGAGTTTGTGGTGGTCGACGCGACGGATATGAAGCAAGTCGCGGCGGTGCGCTTGCCGGAGAGGGTACCTTATGGTTTCCATGGAACGTTCGTGAGCGAGAATCAGTTGAAGGAACAAGTTTTCTGA
Protein Sequence
- >AT3G24220.1
MQHSLRSDLLPTKTSPRSHLLPQPKNANISRRILINPFKIPTLPDLTSPVPSPVKLKPTYPNLNLLQKLAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPVNECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSSVIAHPKVDATTGDLHTLSYNVLKKPHLRYLKFNTCGKKTRDVEITLPEPTMIHDFAITENFVVIPDQQMVFKLSEMIRGGSPVIYVKEKMARFGVLSKQDLTGSDINWVDVPDCFCFHLWNAWEERTEEGDPVIVVIGSCMSPPDTIFSESGEPTRVELSEIRLNMRTKESNRKVIVTGVNLEAGHINRSYVGRKSQFVYIAIADPWPKCSGIAKVDIQNGTVSEFNYGPSRFGGEPCFVPEGEGEEDKGYVMGFVRDEEKDESEFVVVDATDMKQVAAVRLPERVPYGFHGTFVSENQLKEQVF