Information report for AT3G23990
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- Analysis of the Arabidopsis mitochondrial proteome. DOI: 6919 ; PMID: 11743115
- Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. DOI: 6987 ; PMID: 11743114
- A family of RRM-type RNA-binding proteins specific to plant mitochondria. DOI: 10.1073/pnas.092019599 ; PMID: 11972043
- The impact of oxidative stress on Arabidopsis mitochondria. DOI: 10.1046/j.1365-313x.2002.01474.x ; PMID: 12492832
- Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome. DOI: 10.1105/tpc.010009 ; PMID: 12837951
- Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. DOI: 10.1105/tpc.016055 ; PMID: 14671022
- A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. DOI: 10.1104/pp.103.033910 ; PMID: 14730085
- When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress. DOI: 10.1104/pp.103.033431 ; PMID: 15047901
- The effect of alpha-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination. DOI: 10.1104/pp.103.036293 ; PMID: 15047896
- Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. DOI: 10.1093/pcp/pch099 ; PMID: 15215502
- Comparative proteome analysis of differentially expressed proteins induced by K+ deficiency in Arabidopsis thaliana. DOI: 10.1002/pmic.200400898 ; PMID: 15449379
- Analysis of detergent-resistant membranes in Arabidopsis. Evidence for plasma membrane lipid rafts. DOI: 10.1104/pp.104.053041 ; PMID: 15618420
- Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. DOI: 10.1104/pp.104.053637 ; PMID: 15734919
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Stress-induced protein S-glutathionylation in Arabidopsis. DOI: 10.1104/pp.104.058917 ; PMID: 16055689
- A reference map of the Arabidopsis thaliana mature pollen proteome. DOI: 10.1016/j.bbrc.2005.09.185 ; PMID: 16242667
- Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants. DOI: 10.1074/jbc.M511542200 ; PMID: 16407270
- The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses. DOI: 10.1002/pmic.200500543 ; PMID: 16502469
- Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms. DOI: 10.1104/pp.106.082057 ; PMID: 16679420
- Functional characterization of a glycine-rich RNA-binding protein 2 in Arabidopsis thaliana under abiotic stress conditions. DOI: 10.1111/j.1365-313X.2007.03057.x ; PMID: 17376161
- Nuclear-mitochondrial cross-talk during heat shock in Arabidopsis cell culture. DOI: 10.1111/j.1365-313X.2007.03275.x ; PMID: 17883376
- Alternative and effective proteomic analysis in Arabidopsis. DOI: 10.1002/pmic.200700346 ; PMID: 17828791
- and extracellular-sourced ROS on high light-responsive gene expression in Arabidopsis. DOI: 10.1093/jxb/erm289 ; PMID: 18212028
- General detoxification and stress responses are mediated by oxidized lipids through TGA transcription factors in Arabidopsis. DOI: 10.1105/tpc.107.054809 ; PMID: 18334669
- Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. DOI: 10.1104/pp.109.147942 ; PMID: 20018591
- Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. DOI: 10.1104/pp.109.152413 ; PMID: 20118269
- Mitochondrial Heat Shock Protein 60s Interact with What's This Factor 9 to Regulate RNA Splicing of ccmFC and rpl2. DOI: 10.1093/pcp/pcy199 ; PMID: 30289547
- Analysis of the Arabidopsis mitochondrial proteome. DOI: 6919 ; PMID: 11743115
- Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. DOI: 10.1105/tpc.016055 ; PMID: 14671022
- The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions. DOI: 10.1016/j.phytochem.2004.03.028 ; PMID: 15276431
- Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. DOI: 10.1104/pp.104.053637 ; PMID: 15734919
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- A reference map of the Arabidopsis thaliana mature pollen proteome. DOI: 10.1016/j.bbrc.2005.09.185 ; PMID: 16242667
- The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses. DOI: 10.1002/pmic.200500543 ; PMID: 16502469
- Analysis of the soluble ATP-binding proteome of plant mitochondria identifies new proteins and nucleotide triphosphate interactions within the matrix. DOI: 10.1021/pr060403j ; PMID: 17137349
- A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. DOI: 10.1074/mcp.M600250-MCP200 ; PMID: 17151019
- Functional characterization of a glycine-rich RNA-binding protein 2 in Arabidopsis thaliana under abiotic stress conditions. DOI: 10.1111/j.1365-313X.2007.03057.x ; PMID: 17376161
- General detoxification and stress responses are mediated by oxidized lipids through TGA transcription factors in Arabidopsis. DOI: 10.1105/tpc.107.054809 ; PMID: 18334669
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178VEN0
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VEN0
- EnsemblPlants: AT3G23990.1
- Gramene: AT3G23990.1
- KEGG: ath:AT3G23990
- Orthologous matrix: TDTDKME
- ExpressionAtlas: AT3G23990
- InterPro: IPR001844, IPR002423, IPR018370
- PANTHER: PTHR45633
- SUPFAM: SSF48592, SSF52029, SSF54849
- PROSITE: PS00296
- Gene3D: 1.10.560.10, 3.30.260.10, 3.50.7.10
- OrthoDB: A0A178VEN0
- SWISS-MODEL: A0A178VEN0
- Conserved Domain Database: cd03344
Homologs
- Arachis hypogaea arahy.Tifrunner.gnm1.ann1.63KFKN, arahy.Tifrunner.gnm1.ann1.5Z9RKI
- Brassica napus GSBRNA2T00145846001
- Daucus carota DCAR_026693
- Medicago truncatula Medtr1g037030
- Oryza sativa OsCpn60beta1, OsCPn60alpha1;OsCPn60a1, TCD9
- Zea mays GRMZM2G156333
Sequences
cDNA Sequence
- >AT3G23990.1
CGTCAAATGAGATTAACGATTTTTAAGTTTGAAATGAAAGTTAAACCCTAAAGAGGCCTAAAACCCTAAAAGGCTCATATAGTAACTAGCAGCTGCTTCTAGACTCTTCTCCTTCGCTTATTAAGCCCTCTCAACTCTTCTTCTCTCTCTCTCTCTCTCTCCGCCTGTTCTCCATTGATCTAATCTAACTCGCTCATCAGAATCATCTCTTCATCGTTAATCCTCTTCCTTCTCACTCACCATGTATCGTTTCGCTTCTAACCTCGCCTCCAAGGCAAGGATTGCTCAAAACGCTCGCCAGGTTTCCAGCAGAATGAGCTGGAGCAGGAACTATGCAGCGAAAGAGATTAAGTTTGGTGTTGAAGCTCGAGCTTTGATGCTTAAGGGTGTTGAAGATCTTGCTGATGCTGTTAAAGTCACCATGGGTCCCAAGGGACGTAATGTTGTGATTGAGCAAAGTTGGGGTGCTCCTAAAGTGACAAAAGATGGTGTTACTGTTGCCAAAAGTATTGAGTTCAAAGACAAAATTAAGAACGTTGGTGCTAGTCTTGTGAAGCAGGTTGCAAATGCTACTAATGATGTTGCTGGTGATGGTACTACTTGTGCTACTGTCCTCACCCGGGCTATATTTGCCGAAGGATGCAAATCAGTTGCCGCAGGAATGAATGCAATGGACTTGCGAAGAGGTATTTCCATGGCAGTTGATGCTGTGGTGACAAACCTTAAAAGCAAGGCTAGGATGATCAGCACATCTGAAGAGATTGCTCAGGTTGGAACCATTTCTGCTAATGGAGAGAGGGAAATTGGTGAACTTATTGCCAAGGCTATGGAGAAGGTTGGCAAAGAAGGTGTTATCACAATCCAAGATGGAAAGACATTGTTTAACGAGTTGGAAGTTGTAGAGGGGATGAAATTGGACAGAGGTTATACTTCACCATACTTTATCACTAATCAAAAAACCCAAAAATGTGAACTAGACGATCCTCTCATTCTTATCCACGAGAAGAAGATCTCAAGCATCAACTCTATAGTGAAAGTGTTGGAGTTGGCTCTGAAGAGGCAAAGACCACTATTGATTGTTTCTGAAGATGTGGAAAGTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGTGCCGGAATTAAGGTCTGTGCCATCAAGGCCCCTGGGTTTGGAGAGAATAGGAAGGCCAATTTGCAAGACCTTGCTGCCCTTACTGGTGGAGAGGTTATCACAGACGAGCTTGGCATGAATCTGGAGAAGGTGGACCTAAGCATGCTAGGAACCTGCAAAAAGGTTACAGTCTCCAAGGACGACACTGTTATTCTTGATGGGGCTGGCGACAAGAAAGGAATTGAGGAAAGATGTGAACAGATTAGGTCAGCAATTGAACTGAGCACCTCAGATTATGACAAGGAAAAACTGCAAGAAAGGTTGGCTAAGCTCTCTGGAGGTGTTGCAGTGTTGAAGATTGGAGGAGCAAGTGAAGCTGAAGTTGGTGAGAAGAAAGACAGAGTGACAGATGCTTTGAATGCCACTAAAGCAGCAGTTGAAGAGGGTATTTTACCAGGAGGAGGTGTGGCTCTTCTATACGCAGCAAGAGAGTTGGAAAAACTTCCAACAGCCAACTTTGACCAGAAGATTGGTGTCCAGATTATTCAGAACGCATTGAAGACTCCTGTTTACACAATCGCTTCAAATGCTGGAGTTGAAGGTGCTGTTATTGTTGGCAAGCTCTTGGAGCAAGATAACCCAGACCTCGGTTATGATGCTGCTAAAGGTGAATATGTGGATATGGTGAAAGCTGGAATCATAGACCCTCTGAAAGTGATCAGGACAGCTTTGGTTGATGCTGCGAGTGTGTCATCTTTGTTGACGACAACGGAAGCTGTAGTGGTTGATCTTCCGAAAGACGAAAGCGAGTCAGGAGCAGCAGGAGCAGGCATGGGTGGAATGGGAGGCATGGACTACTAGATCCACTAAATTCTGTCTTTTGTTTTCACCAATCACCATCTTAACTTGAGAAGAGAGATACGATTCTTTTAGGAGTTTTAGTCTTCGTCTTTGCCTTATTGTTGCTCAATAACCTCAAAAGTTTTACAATAAACAGAGCACACTTGGCAATGTTACGAGACACACTATTAGCATCAACAAATTTTCCTAAGGCATCATTTGTGTTTGTCATTGCTTCTGGTTCAGGTCTGGTACTCCAACAATAAACCGACCCTTCAAATTACAGTATTTATATATATACCCAAGTTTCATCGTAGTTAA
CDS Sequence
- >AT3G23990.1
ATGTATCGTTTCGCTTCTAACCTCGCCTCCAAGGCAAGGATTGCTCAAAACGCTCGCCAGGTTTCCAGCAGAATGAGCTGGAGCAGGAACTATGCAGCGAAAGAGATTAAGTTTGGTGTTGAAGCTCGAGCTTTGATGCTTAAGGGTGTTGAAGATCTTGCTGATGCTGTTAAAGTCACCATGGGTCCCAAGGGACGTAATGTTGTGATTGAGCAAAGTTGGGGTGCTCCTAAAGTGACAAAAGATGGTGTTACTGTTGCCAAAAGTATTGAGTTCAAAGACAAAATTAAGAACGTTGGTGCTAGTCTTGTGAAGCAGGTTGCAAATGCTACTAATGATGTTGCTGGTGATGGTACTACTTGTGCTACTGTCCTCACCCGGGCTATATTTGCCGAAGGATGCAAATCAGTTGCCGCAGGAATGAATGCAATGGACTTGCGAAGAGGTATTTCCATGGCAGTTGATGCTGTGGTGACAAACCTTAAAAGCAAGGCTAGGATGATCAGCACATCTGAAGAGATTGCTCAGGTTGGAACCATTTCTGCTAATGGAGAGAGGGAAATTGGTGAACTTATTGCCAAGGCTATGGAGAAGGTTGGCAAAGAAGGTGTTATCACAATCCAAGATGGAAAGACATTGTTTAACGAGTTGGAAGTTGTAGAGGGGATGAAATTGGACAGAGGTTATACTTCACCATACTTTATCACTAATCAAAAAACCCAAAAATGTGAACTAGACGATCCTCTCATTCTTATCCACGAGAAGAAGATCTCAAGCATCAACTCTATAGTGAAAGTGTTGGAGTTGGCTCTGAAGAGGCAAAGACCACTATTGATTGTTTCTGAAGATGTGGAAAGTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGTGCCGGAATTAAGGTCTGTGCCATCAAGGCCCCTGGGTTTGGAGAGAATAGGAAGGCCAATTTGCAAGACCTTGCTGCCCTTACTGGTGGAGAGGTTATCACAGACGAGCTTGGCATGAATCTGGAGAAGGTGGACCTAAGCATGCTAGGAACCTGCAAAAAGGTTACAGTCTCCAAGGACGACACTGTTATTCTTGATGGGGCTGGCGACAAGAAAGGAATTGAGGAAAGATGTGAACAGATTAGGTCAGCAATTGAACTGAGCACCTCAGATTATGACAAGGAAAAACTGCAAGAAAGGTTGGCTAAGCTCTCTGGAGGTGTTGCAGTGTTGAAGATTGGAGGAGCAAGTGAAGCTGAAGTTGGTGAGAAGAAAGACAGAGTGACAGATGCTTTGAATGCCACTAAAGCAGCAGTTGAAGAGGGTATTTTACCAGGAGGAGGTGTGGCTCTTCTATACGCAGCAAGAGAGTTGGAAAAACTTCCAACAGCCAACTTTGACCAGAAGATTGGTGTCCAGATTATTCAGAACGCATTGAAGACTCCTGTTTACACAATCGCTTCAAATGCTGGAGTTGAAGGTGCTGTTATTGTTGGCAAGCTCTTGGAGCAAGATAACCCAGACCTCGGTTATGATGCTGCTAAAGGTGAATATGTGGATATGGTGAAAGCTGGAATCATAGACCCTCTGAAAGTGATCAGGACAGCTTTGGTTGATGCTGCGAGTGTGTCATCTTTGTTGACGACAACGGAAGCTGTAGTGGTTGATCTTCCGAAAGACGAAAGCGAGTCAGGAGCAGCAGGAGCAGGCATGGGTGGAATGGGAGGCATGGACTACTAG
Protein Sequence
- >AT3G23990.1
MYRFASNLASKARIAQNARQVSSRMSWSRNYAAKEIKFGVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINSIVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQDLAALTGGEVITDELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVVDLPKDESESGAAGAGMGGMGGMDY