Information report for AT3G23920
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen tube cell , pollen
Literature and News
- Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence. DOI: 10.1046/j.1365-313x.2003.01624.x ; PMID: 12535340
- Diurnal changes in the transcriptome encoding enzymes of starch metabolism provide evidence for both transcriptional and posttranscriptional regulation of starch metabolism in Arabidopsis leaves. DOI: 10.1104/pp.104.044347 ; PMID: 15347792
- RNA interference of Arabidopsis beta-amylase8 prevents maltose accumulation upon cold shock and increases sensitivity of PSII photochemical efficiency to freezing stress. DOI: 10.1111/j.1365-313X.2005.02565.x ; PMID: 16297066
- Redox regulation of a novel plastid-targeted beta-amylase of Arabidopsis. DOI: 10.1104/pp.106.079186 ; PMID: 16698902
- Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. DOI: 10.1021/pr8000173 ; PMID: 18433157
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A. DOI: 10.1104/pp.109.135327 ; PMID: 19502356
- Starch turnover in developing oilseed embryos. DOI: 10.1111/j.1469-8137.2010.03311.x ; PMID: 20546137
- Thioredoxin-regulated beta-amylase (BAM1) triggers diurnal starch degradation in guard cells, and in mesophyll cells under osmotic stress. DOI: 10.1093/jxb/erq288 ; PMID: 20876336
- Comprehensive survey of redox sensitive starch metabolising enzymes in Arabidopsis thaliana. DOI: 10.1016/j.plaphy.2012.06.017 ; PMID: 22789914
- Starch metabolism in Arabidopsis. DOI: 10.1199/tab.0160 ; PMID: 23393426
- β-Amylase1 and β-amylase3 are plastidic starch hydrolases in Arabidopsis That Seem to Be Adapted for Different Thermal, pH, and stress conditions. DOI: 10.1104/pp.114.246421 ; PMID: 25293962
- Blue Light Induces a Distinct Starch Degradation Pathway in Guard Cells for Stomatal Opening. DOI: 10.1016/j.cub.2015.12.036 ; PMID: 26774787
- Environmental Regulation of Heterosis in the Allopolyploid Arabidopsis suecica. DOI: 10.1104/pp.16.00052 ; PMID: 26896394
- Regulation of Leaf Starch Degradation by Abscisic Acid Is Important for Osmotic Stress Tolerance in Plants. DOI: 10.1105/tpc.16.00143 ; PMID: 27436713
- The C3H-type zinc finger protein GDS1/C3H42 is a nuclear-speckle-localized protein that is essential for normal growth and development in Arabidopsis. DOI: 10.1016/j.plantsci.2016.06.010 ; PMID: 27457991
- Genetic and isotope ratio mass spectrometric evidence for the occurrence of starch degradation and cycling in illuminated Arabidopsis leaves. DOI: 10.1371/journal.pone.0171245 ; PMID: 28152100
- Truncated BAM receptors interfere the apical meristematic activity in a dominant negative manner when ectopically expressed in Arabidopsis. DOI: 10.1016/j.plantsci.2018.01.003 ; PMID: 29606214
- Review: The Arabidopsis β-amylase (BAM) gene family: Diversity of form and function. DOI: 10.1016/j.plantsci.2018.08.016 ; PMID: 30348315
- Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. DOI: 10.1038/s41477-019-0378-z ; PMID: 30833711
- Young seedlings adapt to stress by retaining starch and retarding growth through ABA-Dependent and -independent pathways in Arabidopsis. DOI: 10.1016/j.bbrc.2019.06.023 ; PMID: 31186142
- Involvement of five catalytically active Arabidopsis β-amylases in leaf starch metabolism and plant growth. DOI: 10.1002/pld3.199 ; PMID: 32072133
- Guard Cell Starch Degradation Yields Glucose for Rapid Stomatal Opening in Arabidopsis. DOI: 10.1105/tpc.18.00802 ; PMID: 32354788
- Receptor-like cytoplasmic kinase MAZZA mediates developmental processes with CLAVATA1 family receptors in Arabidopsis. DOI: 10.1093/jxb/erab183 ; PMID: 33909893
- A complex tissue-specific interplay between the Arabidopsis transcription factors AtMYB68, AtHB23, and AtPHL1 modulates primary and lateral root development and adaptation to salinity. DOI: 10.1111/tpj.16273 ; PMID: 37165773
- Cell type-specific proteomics uncovers a RAF15-SnRK2.6/OST1 kinase cascade in guard cells. DOI: 10.1111/jipb.13536 ; PMID: 37226855
- Starch degradation. DOI: 10.1146/annurev.arplant.56.032604.144257 ; PMID: 15862090
- Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. DOI: 10.1021/pr8000173 ; PMID: 18433157
Gene Resources
- UniProt: A0A178VNG4
- EMBL: CACRSJ010000106, LUHQ01000003
- AlphaFoldDB: A0A178VNG4
- EnsemblPlants: AT3G23920.1
- Gramene: AT3G23920.1
- KEGG: ath:AT3G23920
- Orthologous matrix: SMTHQIG
- ExpressionAtlas: AT3G23920
- InterPro: IPR001371, IPR001554, IPR017853
- PANTHER: PTHR31352, PTHR31352:SF31
- SUPFAM: SSF51445
- PROSITE: PS00506, PS00679
- Gene3D: 3.20.20.80
- SWISS-MODEL: A0A178VNG4
Homologs
- Brachypodium distachyon Bradi4g38630.1.p
- Hordeum vulgare Bmy1
- Oryza sativa OsBMY4
- Panicum virgatum Pavir.2NG236800.1.p
- Setaria italica Seita.2G134700.1.p
- Setaria viridis Sevir.2G140000.1.p
- Zea mays GRMZM2G446515_P05
Sequences
cDNA Sequence
- >AT3G23920.1
TTCACTTTTACATACATATTTGTTTCCTTCATATATTTATTTATTTACATAACAAACCAATATGAAAAACGTACGTTTCATGAAAGAGAACGTTGTAGAACACTATCACCGTTTGCTTGTAAGAAAAAGGCTTATCTCACCTATAAACTCGTGAGTCATATTTATACTCTTAACAATAATAAATAAAATAAAACTCTATTTTGGTAACCACAAAAAATATTCTGAGGCTAAAAGCGCGTCTGCTGGAAAGTTCACGCGCTCTGCTAACCCCACCGTCCATTCTGACTCTTTTAGATCTTAACCGTGTCTTTATCCACATCATACGTTTATACACGTGTCACACGATCACCTATTCTATAAAAAACATTATTTTAATCTTATCCTTTTTATGCTTCCCCTATAAATTATCTTCTCTTCCTCCTTCTCCGATCTCTCCTCCGTCACACAAAACTTCCGATTTCAAAAAAACAATTTGAAATTTGTCAAAAGGAATATTCTGACGATCGATTCTTGATTCGTTTTCTCGCGTATAGAGAGAAAAATGGCGCTTAATTTATCGCATCAGCTAGGAGTACTCGCCGGAACTCCGATCAAATCCGGTGAAATGACAGATTCATCGTTGTTATCAATTTCACCACCATCGGCGAGAATGATGACACCTAAAGCAATGAATCGAAACTACAAGGCTCACGGAACAGATCCATCACCGCCGATGAGTCCAATTTTAGGTGCGACACGTGCGGATCTGTCGGTGGCGTGTAAAGCTTTCGCGGTGGAGAATGGAATCGGGACCATTGAAGAACAGAGAACGTATAGAGAAGGAGGGATTGGTGGAAAGAAAGAAGGAGGAGGAGGTGTTCCTGTGTTTGTGATGATGCCGCTTGATAGTGTTACCATGGGGAACACGGTGAATCGAAGAAAGGCGATGAAAGCGAGTTTGCAAGCGTTGAAGAGTGCTGGTGTTGAAGGGATTATGATTGATGTGTGGTGGGGTTTGGTTGAGAAGGAATCTCCTGGAACTTATAATTGGGGAGGTTATAATGAATTGCTTGAGCTGGCTAAGAAGCTTGGTCTTAAGGTTCAAGCTGTTATGTCGTTTCATCAGTGTGGTGGCAACGTTGGTGACTCTGTCACTATTCCTCTGCCTCAGTGGGTTGTTGAAGAGGTTGACAAGGATCCAGACCTTGCATACACTGATCAGTGGGGAAGAAGGAACCATGAGTATATATCACTTGGCGCTGATACACTCCCTGTTCTCAAAGGTAGAACACCTGTGCAATGCTATGCGGATTTCATGCGTGCTTTTAGAGACAACTTCAAGCATCTTCTTGGAGAGACCATTGTGGAAATCCAAGTGGGAATGGGACCTGCAGGAGAGCTGCGTTACCCTTCGTACCCCGAGCAAGAAGGGACATGGAAGTTCCCAGGGATTGGAGCCTTCCAGTGCTATGATAAGTACTCGTTAAGCAGCTTGAAAGCAGCAGCTGAGACTTATGGGAAGCCAGAGTGGGGCAGTACTGGCCCAACCGATGCTGGTCACTACAATAACTGGCCAGAAGACACCCAGTTCTTCAAAAAAGAAGGTGGTGGTTGGAACTCAGAGTATGGAGATTTCTTCCTCTCATGGTACTCCCAGATGCTGTTGGATCACGGCGAGCGGATCCTATCCTCAGCCAAATCAATATTCGAAAACATGGGTGTCAAAATATCGGTCAAAATCGCTGGAATCCACTGGCACTACGGGACCCGCTCTCACGCGCCTGAGCTCACAGCAGGGTACTACAACACAAGGTTCAGAGACGGGTACCTCCCGATCGCCCAAATGTTAGCCAGACACAATGCCATATTCAACTTCACATGTATCGAGATGAGGGATCACGAACAGCCTCAAGACGCACTTTGTGCACCAGAGAAGCTAGTTAACCAAGTTGCTCTAGCCACTCTAGCCGCAGAAGTTCCTCTAGCTGGTGAAAACGCATTGCCTAGGTACGACGACTATGCACACGAGCAGATTCTCAAGGCCTCCGCGCTGAACCTTGATCAAAACAATGAGGGAGAACCTCGAGAGATGTGTGCATTTACTTACCTAAGGATGAATCCGGAGTTGTTTCAGGCGGATAACTGGGGAAAATTCGTAGCGTTTGTGAAGAAAATGGGTGAAGGGAGAGACTCACATAGATGTCGGGAAGAAGTTGAGCGTGAGGCTGAGCATTTTGTGCACGTTACTCAGCCGCTGGTTCAAGAAGCTGCAGTGGCTCTCACTCACTAGAGAGATAGATTGTGGCATGGTTCTATGGTTTATGTTTGTATGCGATTATAATGAAATGGTTATATGACAATGCCAAAAAAGATGTTTAGGCTTGTTGGAGCTTGTGTATGTATTGTTAGTAAAACTGAAATGTATGCCACAGCTCTGGTTTTTTTCCGGTCAGGTTGTGGCATGCTACTACTTTTAATATATGCTAAAAGATGTACATGTTCTTTAATGAAGCCAAAATAAATAGCATTTCTTTAATACA
CDS Sequence
- >AT3G23920.1
ATGGCGCTTAATTTATCGCATCAGCTAGGAGTACTCGCCGGAACTCCGATCAAATCCGGTGAAATGACAGATTCATCGTTGTTATCAATTTCACCACCATCGGCGAGAATGATGACACCTAAAGCAATGAATCGAAACTACAAGGCTCACGGAACAGATCCATCACCGCCGATGAGTCCAATTTTAGGTGCGACACGTGCGGATCTGTCGGTGGCGTGTAAAGCTTTCGCGGTGGAGAATGGAATCGGGACCATTGAAGAACAGAGAACGTATAGAGAAGGAGGGATTGGTGGAAAGAAAGAAGGAGGAGGAGGTGTTCCTGTGTTTGTGATGATGCCGCTTGATAGTGTTACCATGGGGAACACGGTGAATCGAAGAAAGGCGATGAAAGCGAGTTTGCAAGCGTTGAAGAGTGCTGGTGTTGAAGGGATTATGATTGATGTGTGGTGGGGTTTGGTTGAGAAGGAATCTCCTGGAACTTATAATTGGGGAGGTTATAATGAATTGCTTGAGCTGGCTAAGAAGCTTGGTCTTAAGGTTCAAGCTGTTATGTCGTTTCATCAGTGTGGTGGCAACGTTGGTGACTCTGTCACTATTCCTCTGCCTCAGTGGGTTGTTGAAGAGGTTGACAAGGATCCAGACCTTGCATACACTGATCAGTGGGGAAGAAGGAACCATGAGTATATATCACTTGGCGCTGATACACTCCCTGTTCTCAAAGGTAGAACACCTGTGCAATGCTATGCGGATTTCATGCGTGCTTTTAGAGACAACTTCAAGCATCTTCTTGGAGAGACCATTGTGGAAATCCAAGTGGGAATGGGACCTGCAGGAGAGCTGCGTTACCCTTCGTACCCCGAGCAAGAAGGGACATGGAAGTTCCCAGGGATTGGAGCCTTCCAGTGCTATGATAAGTACTCGTTAAGCAGCTTGAAAGCAGCAGCTGAGACTTATGGGAAGCCAGAGTGGGGCAGTACTGGCCCAACCGATGCTGGTCACTACAATAACTGGCCAGAAGACACCCAGTTCTTCAAAAAAGAAGGTGGTGGTTGGAACTCAGAGTATGGAGATTTCTTCCTCTCATGGTACTCCCAGATGCTGTTGGATCACGGCGAGCGGATCCTATCCTCAGCCAAATCAATATTCGAAAACATGGGTGTCAAAATATCGGTCAAAATCGCTGGAATCCACTGGCACTACGGGACCCGCTCTCACGCGCCTGAGCTCACAGCAGGGTACTACAACACAAGGTTCAGAGACGGGTACCTCCCGATCGCCCAAATGTTAGCCAGACACAATGCCATATTCAACTTCACATGTATCGAGATGAGGGATCACGAACAGCCTCAAGACGCACTTTGTGCACCAGAGAAGCTAGTTAACCAAGTTGCTCTAGCCACTCTAGCCGCAGAAGTTCCTCTAGCTGGTGAAAACGCATTGCCTAGGTACGACGACTATGCACACGAGCAGATTCTCAAGGCCTCCGCGCTGAACCTTGATCAAAACAATGAGGGAGAACCTCGAGAGATGTGTGCATTTACTTACCTAAGGATGAATCCGGAGTTGTTTCAGGCGGATAACTGGGGAAAATTCGTAGCGTTTGTGAAGAAAATGGGTGAAGGGAGAGACTCACATAGATGTCGGGAAGAAGTTGAGCGTGAGGCTGAGCATTTTGTGCACGTTACTCAGCCGCTGGTTCAAGAAGCTGCAGTGGCTCTCACTCACTAG
Protein Sequence
- >AT3G23920.1
MALNLSHQLGVLAGTPIKSGEMTDSSLLSISPPSARMMTPKAMNRNYKAHGTDPSPPMSPILGATRADLSVACKAFAVENGIGTIEEQRTYREGGIGGKKEGGGGVPVFVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMIDVWWGLVEKESPGTYNWGGYNELLELAKKLGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEEVDKDPDLAYTDQWGRRNHEYISLGADTLPVLKGRTPVQCYADFMRAFRDNFKHLLGETIVEIQVGMGPAGELRYPSYPEQEGTWKFPGIGAFQCYDKYSLSSLKAAAETYGKPEWGSTGPTDAGHYNNWPEDTQFFKKEGGGWNSEYGDFFLSWYSQMLLDHGERILSSAKSIFENMGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIAQMLARHNAIFNFTCIEMRDHEQPQDALCAPEKLVNQVALATLAAEVPLAGENALPRYDDYAHEQILKASALNLDQNNEGEPREMCAFTYLRMNPELFQADNWGKFVAFVKKMGEGRDSHRCREEVEREAEHFVHVTQPLVQEAAVALTH