Information report for AT3G23830
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , root , flower
Literature and News
- A family of RRM-type RNA-binding proteins specific to plant mitochondria. DOI: 10.1073/pnas.092019599 ; PMID: 11972043
- Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome. DOI: 10.1105/tpc.010009 ; PMID: 12837951
- a high-density colony array study (HDCA). DOI: 10.1046/j.1365-313x.2003.01847.x ; PMID: 12969430
- Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis. DOI: 10.1111/j.1365-313X.2004.02156.x ; PMID: 15272873
- Combinatorial microarray analysis revealing arabidopsis genes implicated in cytokinin responses through the His->Asp Phosphorelay circuitry. DOI: 10.1093/pcp/pci033 ; PMID: 15695462
- Characterization of transgenic Arabidopsis plants overexpressing GR-RBP4 under high salinity, dehydration, or cold stress. DOI: 10.1093/jxb/eri298 ; PMID: 16207746
- Features of Arabidopsis genes and genome discovered using full-length cDNAs. DOI: 10.1007/s11103-005-2564-9 ; PMID: 16463100
- Cold shock domain proteins and glycine-rich RNA-binding proteins from Arabidopsis thaliana can promote the cold adaptation process in Escherichia coli. DOI: 10.1093/nar/gkl1076 ; PMID: 17169986
- Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes. DOI: 10.1186/1471-2164-9-159 ; PMID: 18402682
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Structural determinants crucial to the RNA chaperone activity of glycine-rich RNA-binding proteins 4 and 7 in Arabidopsis thaliana during the cold adaptation process. DOI: 10.1093/jxb/err101 ; PMID: 21511907
- In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. DOI: 10.1104/pp.111.183129 ; PMID: 21908688
- The RNA chaperone and protein chaperone activity of Arabidopsis glycine-rich RNA-binding protein 4 and 7 is determined by the propensity for the formation of high molecular weight complexes. DOI: 10.1007/s10930-013-9504-3 ; PMID: 23912241
- Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes. DOI: 10.1007/s00438-015-1080-0 ; PMID: 26123085
- Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. DOI: 10.1186/s12870-018-1255-z ; PMID: 29490615
Gene Resources
- UniProt: A0A178VD35
- EMBL: CACRSJ010000106, LUHQ01000003
- AlphaFoldDB: A0A178VD35
- EnsemblPlants: AT3G23830.1, AT3G23830.2
- Gramene: AT3G23830.1, AT3G23830.2
- KEGG: ath:AT3G23830
- Orthologous matrix: NLANDRP
- ExpressionAtlas: AT3G23830
- InterPro: IPR000504, IPR012677, IPR035979
- PANTHER: PTHR48027
- SUPFAM: SSF54928
- PROSITE: PS50102
- Gene3D: 3.30.70.330
- SWISS-MODEL: A0A178VD35
- Conserved Domain Database: cd21608
Homologs
- Brachypodium distachyon BRADI_4g00870v3, BRADI_4g00940v3
- Glycine max Glyma.11G117500
- Oryza sativa LOC_Os12g43600, Osgr-rbp4;Osgrp1
- Vitis vinifera VIT_03s0063g02610
- Zea mays GRMZM2G080603
Sequences
cDNA Sequence
- >AT3G23830.1
CAAAGGTTGAACAAGTTAGAGAGAAGTCCGGGAACTAAATACTCTACATCAGCTACATTCTATATTTGATACACTTGCGCTTTTCCAGTGTGTTGACTTCTCTCATTACTCAATTCTATTGGACAACTACGGTAGTATACAGTAATACGATACACCTAGCCACAGGTGATTAGTTTGAGCAAAACAAAAATGAGAGTTTCTGAGCTCAGTATATAAATCCCTTAAACCCTACTCTTTGTCTTCATCCTCTCACTGCCTCTTTTCTCACTCACTGTTACTTCGCTAAAACCCTAATTTCGCCATTCCCTTCTCTAAGTTTTGTGTGTAGACATTTAGAAATGGCTTTCTGCAACAAACTTAGCGGTATCTTGAGACAAGGGGTTTCTCAGAGCTCAAATGGTCCAGTTACATCTATGCTTGGCTCTCTTCGTTACATGTCCTCTAAGCTTTTTGTTGGTGGTCTCTCTTGGGGAACTGATGACAGCTCCTTAAAGCAAGCTTTCACTAGCTTTGGTGAAGTCACAGAAGCAACGGTGATTGCAGACAGAGAGACAGGGAGGTCGAGGGGATTCGGATTTGTTAGCTTCAGCTGTGAGGATTCTGCTAACAATGCCATAAAAGAAATGGATGGAAAGGAGCTGAATGGTAGGCAAATCCGTGTGAATCTTGCAACCGAAAGATCGAGTGCCCCGAGATCATCATTTGGTGGTGGTGGCGGTTACGGTGGTGGCGGTGGTGGTGGCTACTAAAGCAAACAAGCCAGAGGATTTGAGAGAGAGAGGAGCCTCAGAACTTTCAGTAGTTAGTTAGTTTGTTTGTTTCCTCTTTGTTTAACTGCAAATAACCTTAACTGGTTTTGTTAAACTTATTTAGCCCTGTTTTTTGGTTGTGTCTGAATACCGTAGTATTGTTGCTCCATCTTCTGCAAATCTATTAGCATCGAGTTCGATTCTATGTTTACTCTTATCGTTTATCTACCCTACCATTTGTGTTCTTCGGCTTTATTTAATTTCCTAAAACATGAATTTTGAATCTTTCATGTTTCCATGTCGGTAATATAGACTATAGAGACCAAAATTTAT - >AT3G23830.2
CAAAGGTTGAACAAGTTAGAGAGAAGTCCGGGAACTAAATACTCTACATCAGCTACATTCTATATTTGATACACTTGCGCTTTTCCAGTGTGTTGACTTCTCTCATTACTCAATTCTATTGGACAACTACGGTAGTATACAGTAATACGATACACCTAGCCACAGGTGATTAGTTTGAGCAAAACAAAAATGAGAGTTTCTGAGCTCAGTATATAAATCCCTTAAACCCTACTCTTTGTCTTCATCCTCTCACTGCCTCTTTTCTCACTCACTGTTACTTCGCTAAAACCCTAATTTCGCCATTCCCTTCTCTAAGTTTTGTGTGTAGACATTTAGAAATGGCTTTCTGCAACAAACTTAGCGGTATCTTGAGACAAGGGGTTTCTCAGAGCTCAAATGGTCCAGTTACATCTATGCTTGGCTCTCTTCGTTACATGTCCTCTAAGCTTTTTGTTGGTGGTCTCTCTTGGGGAACTGATGACAGCTCCTTAAAGCAAGCTTTCACTAGCTTTGGTGAAGTCACAGAAGCAACGGTGATTGCAGACAGAGAGACAGGGAGGTCGAGGGGATTCGGATTTGTTAGCTTCAGCTGTGAGGATTCTGCTAACAATGCCATAAAAGAAATGGATGGAAAGGAGCTGAATGGTAGGCAAATCCGTGTGAATCTTGCAACCGAAAGATCGAGTGCCCCGAGATCATCATTTGGTGGTGGTGGCGGTTACGGTGGTGGCGGTGGTGGTGGCTACTAAAGCAAACAAGCCAGAGGATTTGAGAGAGAGAGGAGCCTCAGAACTTTCAGTAGTTAGTTAGTTTGTTTGTTTCCTCTTTGTTTAACTGCAAATAACCTTAACTGGTTTTGTTAAACTTATTTAGCCCTGTTTTTTGGTTGTGTCTGAATACCGTAGTATTGTTGCTCCATCTTCTGCAAATCTATTAGCATCGAGTTCGATTCTATGTTTACTCTTATCGTTTATCTACCCTACCATTTGTGTTCTTCGGCTTTATTTAATTTCCTAAAACATGAATTTTGAATCTTTCATGTTTCCATGTCGGTAATATAGACTATAGAGACCAAAATTTAT
CDS Sequence
- >AT3G23830.1
ATGGCTTTCTGCAACAAACTTAGCGGTATCTTGAGACAAGGGGTTTCTCAGAGCTCAAATGGTCCAGTTACATCTATGCTTGGCTCTCTTCGTTACATGTCCTCTAAGCTTTTTGTTGGTGGTCTCTCTTGGGGAACTGATGACAGCTCCTTAAAGCAAGCTTTCACTAGCTTTGGTGAAGTCACAGAAGCAACGGTGATTGCAGACAGAGAGACAGGGAGGTCGAGGGGATTCGGATTTGTTAGCTTCAGCTGTGAGGATTCTGCTAACAATGCCATAAAAGAAATGGATGGAAAGGAGCTGAATGGTAGGCAAATCCGTGTGAATCTTGCAACCGAAAGATCGAGTGCCCCGAGATCATCATTTGGTGGTGGTGGCGGTTACGGTGGTGGCGGTGGTGGTGGCTACTAA - >AT3G23830.2
ATGGCTTTCTGCAACAAACTTAGCGGTATCTTGAGACAAGGGGTTTCTCAGAGCTCAAATGGTCCAGTTACATCTATGCTTGGCTCTCTTCGTTACATGTCCTCTAAGCTTTTTGTTGGTGGTCTCTCTTGGGGAACTGATGACAGCTCCTTAAAGCAAGCTTTCACTAGCTTTGGTGAAGTCACAGAAGCAACGGTGATTGCAGACAGAGAGACAGGGAGGTCGAGGGGATTCGGATTTGTTAGCTTCAGCTGTGAGGATTCTGCTAACAATGCCATAAAAGAAATGGATGGAAAGGAGCTGAATGGTAGGCAAATCCGTGTGAATCTTGCAACCGAAAGATCGAGTGCCCCGAGATCATCATTTGGTGGTGGTGGCGGTTACGGTGGTGGCGGTGGTGGTGGCTACTAA
Protein Sequence
- >AT3G23830.1
MAFCNKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGGGGYGGGGGGGY - >AT3G23830.2
MAFCNKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGGGGYGGGGGGGY