Gene Details:
- Gene ID: AT3G23820
- Gene Symbol: GAE6
- Gene Name: UDP-D-glucuronate 4-epimerase 6
- Description: UDP-D-glucuronate 4-epimerase 6;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009001 — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009049 — inflorescence — inflorescencia (Spanish, exact), 花序 (Japanese, exact), Triticeae spike (narrow)
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Function-related keywords:
- fruit , root , vascular leaf , inflorescence , shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen tube cell , pollen , guard cell
Literature:
- The biosynthesis of D-Galacturonate in plants. functional cloning and characterization of a membrane-anchored UDP-D-Glucuronate 4-epimerase from Arabidopsis. DOI: 10.1104/pp.104.043745 ; PMID: 15247385
- The biosynthesis of UDP-galacturonic acid in plants. Functional cloning and characterization of Arabidopsis UDP-D-glucuronic acid 4-epimerase. DOI: 10.1104/pp.104.052365 ; PMID: 15563616
- GeneCAT–novel webtools that combine BLAST and co-expression analyses. DOI: 10.1093/nar/gkn292 ; PMID: 18480120
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. DOI: 10.1104/pp.108.126979 ; PMID: 18805951
- Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data. DOI: 10.1186/1471-2105-9-S9-S7 ; PMID: 18793471
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. DOI: 10.1104/pp.111.193151 ; PMID: 22430844
- Label-free protein quantification for plant Golgi protein localization and abundance. DOI: 10.1104/pp.114.245589 ; PMID: 25122472
- Arabinogalactan biosynthesis: Implication of AtGALT29A enzyme activity regulated by phosphorylation and co-localized enzymes for nucleotide sugar metabolism in the compartments outside of the Golgi apparatus. DOI: 10.4161/15592324.2014.984524 ; PMID: 25723364
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. DOI: 10.1105/tpc.19.00081 ; PMID: 31266899
Sequences:
cDNA Sequence
- >AT3G23820.1
CTCTGTAAGAAGTCTCCAATGGAGAACAATCTAACTCTTCCAATGTGGCATAGGCCTAATTTGGGGATCCTTCTTATATTTCGGGTAAAATCACACACTCATGTAAAAATACCGACATCACTATCATTATTACAAACAGTACTTTTCTTTCATTATTATAGTTTAGAAAAAAAAATAACTCGTTTATTTATATAATATCTTTATTAGGAAAAAAGTTGTTTCCCGACCAGCAAAATTTCTCTCTTCTTCTTTATAATCATCAGATCGTTCCTTCACTTGATTTTCAGGGCTCGAAATCTCTCTCAAAACCCTCTCAAAAATTCCAAAACATAATCTCATTTCTCAAGTTTAACATTTTCGAGCCCCTTTAGAACAGTGGAGAAAGATCCACACAGATAAAAAAACGGGTGAGTTTTATATCAAATAGACGAAAATGCCCCTGTCGGCGACGGCGGATACAAGCAAGACGGTGAAGCTGGAGAGGTACAATAGCTACCTCCGGAAGATTCACAGCACCAAAGTTCTCAACGCTTCTTCTAAAGTTCTTTTCCGAGCAACGCTTCTCGTAGCTCTTGTCCTCGTCCTCATCTTCGCCATCAACTACCCTCCACTCTCCGATAGCCGCGCCGCCGCAGCACACCACCTCCACCGTCGTAGCTTCTTATCCACCGGACTCTTCTCCTCCTCCTCTTCTTCCTCCTCTATCGGTGGAGCCGCGTGGGAAAAGCGCGTTAGACAATCCTCAACAGCCAAACGACCACACGGTCTCTCCGTCCTAGTCACCGGAGCTGCCGGATTCGTCGGATCCCACTGCTCACTTGCGCTGCGAAAACGTGGCGATGGAGTCTTAGGATTCGACAACTTCAACGATTACTATGACCCATCACTCAAAAGAGCAAGACAAGAGCTCTTGGAGAAACAACAAGTGTTCATCGTCGAAGGTGATCTCAACGATGGACCACTCTTACGTAAACTCTTCGACGTTGTCCCTTTCACTCACATCCTTCACTTAGCCGCTCAAGCCGGAGTACGTTACGCTATGAAAAACCCTCAATCTTACATCGCCTCCAACATCGCCGGATTCGTTAACCTTCTTGAAGTGGCTAAAGCAGCTAATCCACAACCTGCGATTGTTTGGGCTTCCTCTAGCTCTGTTTACGGTCTCAACACTGAGAATCCATTCTCTGAAGAACACCGAACAGACCAACCAGCGAGTCTTTACGCAGCAACCAAGAAAGCTGGTGAAGAGATCGCACATACTTACAACCACATCTACGGTCTCTCCTTAACCGGACTCCGGTTCTTTACGGTTTACGGTCCATGGGGAAGACCAGACATGGCTTACTTCTTCTTCACTAAAGACATCCTCCACGGTAAATCAATCGACATTTACAGAACTCAGGACAATCAAGAAGTGGCGCGTGACTTCACCTACATCGATGACATCGTTAAAGGTTGTGTCGGTGCGTTAGACACGGCTGAGAAAAGCACCGGAAGCGGCGGAAAGAAGCGAGGACAAGCTCAGCTACGTGTTTACAATCTAGGAAACACGTCCCCGGTTCCGGTTGGGAGATTGGTCTCGATCTTGGAAGGATTGTTAGGGACAAAAGCTAAGAAGCATCTTATCAAAATGCCAAGAAACGGTGACGTGCCTTACACGCATGCTAATGTGAGTTTAGCGTATAAAGATTTCGGGTACAAACCGACGACGGATCTCGCGGCGGGGCTGAGGAAGTTCGTCAAGTGGTACGTTGGTTATTATGGGATTCAGCCGAGGGTAAAAAAGGAAACTTCTCACGCCGAAGATTCCGCTTAATAATTTTCTCTCTACCACCATCTCTCTCATCATCACATGCTTGTTTATTTTTCTTACAAAAAAAAAAAAAATCATTTACAGGGACAGATTTCTGTATTTTTCTTTATTTAAAAATTGCTCCCCAAAAAAAAAAAATCATAAATGTTTTTGTGGTGGTCCTTTTTTTAGGGGGATCAAAGTGTGGGAATTAAATTGTTACAGCTGTATGTTATAATAGAAAGATATATAGAAATGAGGAGAGGAAAAAAAAGAAGAAAGGGGTAGAAGAATTGAAAATATATGTGGGATTGTTATGTAATAAATGAAATAGGTTATGATCTTGCTGGAAAGTGTTTAGAGCAGATCTTAGCCGTTGGATTTTTATAATCAAGGAATGAAACCTGTGATCCATTATTATACCAACTGTAACATAAATTTTATTCTCTCTTTTTATCTTATCTTTTTCTCTCTTCTTTTTACTTTTTAATGTTTTGTTTCTCTTTGCTATTTCATGCCAAGACCGAACTGAAGTAAATGGAAAGTAATGTTTTAACTGGATTTTGTTTTGATGAAATGACTCAGAAAATGTACTAATCCGAATCGCAATAAACCATAAAGAGAAAGAAAGTGGACCATGGCATTGGACCCTTTGTTGTTTGTCATCCTATCTTTATTCTCTTTCTTTTGTGTGTTTTTTGGTCTACCAGTTTTAGCTTTTTATTCTAGGTATGAAAATTTGATAATATAAGCTTGGGGAGTTGTTGTTTTAGATATTCTCTTCCGAAGATGCGTGCGAAGATGATG
CDS Sequence
- >AT3G23820.1
ATGCCCCTGTCGGCGACGGCGGATACAAGCAAGACGGTGAAGCTGGAGAGGTACAATAGCTACCTCCGGAAGATTCACAGCACCAAAGTTCTCAACGCTTCTTCTAAAGTTCTTTTCCGAGCAACGCTTCTCGTAGCTCTTGTCCTCGTCCTCATCTTCGCCATCAACTACCCTCCACTCTCCGATAGCCGCGCCGCCGCAGCACACCACCTCCACCGTCGTAGCTTCTTATCCACCGGACTCTTCTCCTCCTCCTCTTCTTCCTCCTCTATCGGTGGAGCCGCGTGGGAAAAGCGCGTTAGACAATCCTCAACAGCCAAACGACCACACGGTCTCTCCGTCCTAGTCACCGGAGCTGCCGGATTCGTCGGATCCCACTGCTCACTTGCGCTGCGAAAACGTGGCGATGGAGTCTTAGGATTCGACAACTTCAACGATTACTATGACCCATCACTCAAAAGAGCAAGACAAGAGCTCTTGGAGAAACAACAAGTGTTCATCGTCGAAGGTGATCTCAACGATGGACCACTCTTACGTAAACTCTTCGACGTTGTCCCTTTCACTCACATCCTTCACTTAGCCGCTCAAGCCGGAGTACGTTACGCTATGAAAAACCCTCAATCTTACATCGCCTCCAACATCGCCGGATTCGTTAACCTTCTTGAAGTGGCTAAAGCAGCTAATCCACAACCTGCGATTGTTTGGGCTTCCTCTAGCTCTGTTTACGGTCTCAACACTGAGAATCCATTCTCTGAAGAACACCGAACAGACCAACCAGCGAGTCTTTACGCAGCAACCAAGAAAGCTGGTGAAGAGATCGCACATACTTACAACCACATCTACGGTCTCTCCTTAACCGGACTCCGGTTCTTTACGGTTTACGGTCCATGGGGAAGACCAGACATGGCTTACTTCTTCTTCACTAAAGACATCCTCCACGGTAAATCAATCGACATTTACAGAACTCAGGACAATCAAGAAGTGGCGCGTGACTTCACCTACATCGATGACATCGTTAAAGGTTGTGTCGGTGCGTTAGACACGGCTGAGAAAAGCACCGGAAGCGGCGGAAAGAAGCGAGGACAAGCTCAGCTACGTGTTTACAATCTAGGAAACACGTCCCCGGTTCCGGTTGGGAGATTGGTCTCGATCTTGGAAGGATTGTTAGGGACAAAAGCTAAGAAGCATCTTATCAAAATGCCAAGAAACGGTGACGTGCCTTACACGCATGCTAATGTGAGTTTAGCGTATAAAGATTTCGGGTACAAACCGACGACGGATCTCGCGGCGGGGCTGAGGAAGTTCGTCAAGTGGTACGTTGGTTATTATGGGATTCAGCCGAGGGTAAAAAAGGAAACTTCTCACGCCGAAGATTCCGCTTAA
Protein Sequence
- >AT3G23820.1
MPLSATADTSKTVKLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLIFAINYPPLSDSRAAAAHHLHRRSFLSTGLFSSSSSSSSIGGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYGIQPRVKKETSHAEDSA