Gene Details:
- Gene ID: AT3G23700
- Gene Symbol: SRRP1
- Gene Name: S1 RNA-binding ribosomal protein 1
- Description: Nucleic acid-binding proteins superfamily;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Function-related keywords:
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , guard cell
Literature:
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Analysis of the Arabidopsis nuclear proteome and its response to cold stress. DOI: 10.1046/j.1365-313x.2003.01907.x ; PMID: 14617066
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Exploring the proteome associated with the mRNA encoding the D1 reaction center protein of Photosystem II in plant chloroplasts. DOI: 10.1111/tpj.14629 ; PMID: 31793101
- Ribonucleoprotein Capture by in Vivo Expression of a Designer Pentatricopeptide Repeat Protein in Arabidopsis. DOI: 10.1105/tpc.19.00177 ; PMID: 31123048
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Analysis of the Arabidopsis nuclear proteome and its response to cold stress. DOI: 10.1046/j.1365-313x.2003.01907.x ; PMID: 14617066
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
Sequences:
cDNA Sequence
- >AT3G23700.1
CTCCAGTCTCTCACTTTCTTATCCAAAATGGCAAAATCCATTAACCATCATTACCTTCAATCTCCGTGGCTTTTTTGCTCTACCGCGCAACAATGGCGGTTTTTAGTGGCGCTACTACTTTAGGTTCTGTTTCATTCGCCTCTCATCTCTTCGACCAACAATCCACTTTCCTCTCTTGCCCACTTAGACTCCTTCCTTCCTCGTCTTCTTCTTCTTCCAATAGAAACTCTCTCGTCTGCATAGTCAAATCCTTCTCAAGCTCCGCCACAGCAGATACCGATAGAAACTCCGATCAATCAGCCTCTTCCTCAGTCCTCTCCGCTTCCAATTCTCTTCTCCGTGATACCTCCGACGAAGCTTCAGCTGCAGGACCAAGCGATTGGAAAACAGCAAAAGCTTATTGTAAAAGTGGTGATACATTTGAAGGTGAAGTTCAAGGCTTTAATGGTGGTGGCTTACTTATTCGTTTTCATTCTCTTGTGGGTTTTCTTCCTTATCCACAATTAAGTCCTTCCCGTTCTTGTAAAGAGCCTCAGAAAAGTATTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGTAAAGGTTGTTCAAGCTGATGAGGAAAATAGAAAGTTGATTTTATCTGAGAAGTTAGCATTATGGCCAAAGTATTCACAAAACGTTAATGTTGGGGATGTGTTTAACGGAAGAGTAGGTTCTGTTGAGGACTATGGTGCCTTTATCCACTTGCGTTTTGATGATGGTCTTTATCATTTAACTGGACTAGTGCATGTCTCCGAAGTATCATGGGATTACGTTCAAGATGTTAGGGATGTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAAAGAGAAATCAAGGATTACACTATCCATCAAACAACTAGAAGATGATCCTCTTCTAGAAACATTAGACAAAGTGATTTTGAAGGACAGTTCTACTGGATCTCCTTCGCTAAGCTCGAACAATGGGGATACAATTGAACCTCTTCCAGGGCTAGAAACAATACTTGAAGAGCTTTTAAAGGAAGATGGAATAGAAGCTGTGAAAATCAACCGGCAAGGATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAATACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGACAGGTGCAAGAGATACACTTGACAACGTCTCTGGAACAAGGAGGAATCAAGAAAGCGCTTCAGCATGTACTAGAACGCGTCCCCTAAGAACCCGAAAAAAGACTTTTGATACTCAGCCACTATATTCAGCTCTATGCATCTCAAACTCTTGCCAATGTAACTTCAAGTGGAGCAGAGACTACTTCAGAAATATTCTTAAAAGGCAAAAATGCAAATTCATTTGTATCATCATTATATGTCACACATAACACAAACCTATGAAAATATATGTGTATACTCAATGTTTTTAGTTACACATTATAAACTTCATTAACATAAACAACTCATAATACATCAAATTCAAGTCTAAAACCTTCTCAAGTCAATAATTGACTTTTTTGACACCATGTTTTGGTAAGTACC
CDS Sequence
- >AT3G23700.1
ATGGCGGTTTTTAGTGGCGCTACTACTTTAGGTTCTGTTTCATTCGCCTCTCATCTCTTCGACCAACAATCCACTTTCCTCTCTTGCCCACTTAGACTCCTTCCTTCCTCGTCTTCTTCTTCTTCCAATAGAAACTCTCTCGTCTGCATAGTCAAATCCTTCTCAAGCTCCGCCACAGCAGATACCGATAGAAACTCCGATCAATCAGCCTCTTCCTCAGTCCTCTCCGCTTCCAATTCTCTTCTCCGTGATACCTCCGACGAAGCTTCAGCTGCAGGACCAAGCGATTGGAAAACAGCAAAAGCTTATTGTAAAAGTGGTGATACATTTGAAGGTGAAGTTCAAGGCTTTAATGGTGGTGGCTTACTTATTCGTTTTCATTCTCTTGTGGGTTTTCTTCCTTATCCACAATTAAGTCCTTCCCGTTCTTGTAAAGAGCCTCAGAAAAGTATTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGTAAAGGTTGTTCAAGCTGATGAGGAAAATAGAAAGTTGATTTTATCTGAGAAGTTAGCATTATGGCCAAAGTATTCACAAAACGTTAATGTTGGGGATGTGTTTAACGGAAGAGTAGGTTCTGTTGAGGACTATGGTGCCTTTATCCACTTGCGTTTTGATGATGGTCTTTATCATTTAACTGGACTAGTGCATGTCTCCGAAGTATCATGGGATTACGTTCAAGATGTTAGGGATGTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAAAGAGAAATCAAGGATTACACTATCCATCAAACAACTAGAAGATGATCCTCTTCTAGAAACATTAGACAAAGTGATTTTGAAGGACAGTTCTACTGGATCTCCTTCGCTAAGCTCGAACAATGGGGATACAATTGAACCTCTTCCAGGGCTAGAAACAATACTTGAAGAGCTTTTAAAGGAAGATGGAATAGAAGCTGTGAAAATCAACCGGCAAGGATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAATACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGACAGGTGCAAGAGATACACTTGACAACGTCTCTGGAACAAGGAGGAATCAAGAAAGCGCTTCAGCATGTACTAGAACGCGTCCCCTAA
Protein Sequence
- >AT3G23700.1
MAVFSGATTLGSVSFASHLFDQQSTFLSCPLRLLPSSSSSSSNRNSLVCIVKSFSSSATADTDRNSDQSASSSVLSASNSLLRDTSDEASAAGPSDWKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSTGSPSLSSNNGDTIEPLPGLETILEELLKEDGIEAVKINRQGFEKRVVSQDLQLWLSNTPPSDGKFVLLARAGRQVQEIHLTTSLEQGGIKKALQHVLERVP