Information report for AT3G23690
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
- The Arabidopsis basic/helix-loop-helix transcription factor family. DOI: 10.1105/tpc.013839 ; PMID: 12897250
- Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. DOI: 10.1105/tpc.151140 ; PMID: 14600211
- Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. DOI: 10.1016/j.molcel.2004.05.027 ; PMID: 15200956
- A global survey of gene regulation during cold acclimation in Arabidopsis thaliana. DOI: 10.1371/journal.pgen.0010026 ; PMID: 16121258
- Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. DOI: 10.1105/tpc.106.041665 ; PMID: 16632643
- A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. DOI: 10.1101/gad.1476406 ; PMID: 17182867
- Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis. DOI: 10.1073/pnas.0611119104 ; PMID: 17360645
- Evolution of complexity in miRNA-mediated gene regulation systems. DOI: 10.1016/j.tig.2007.11.002 ; PMID: 18192068
- Sequence variation of MicroRNAs and their binding sites in Arabidopsis. DOI: 10.1104/pp.108.116582 ; PMID: 18305205
- Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. DOI: 10.1016/j.diff.2010.02.003 ; PMID: 20219281
- Enhanced Y1H assays for Arabidopsis. DOI: 10.1038/nmeth.1750 ; PMID: 22037706
- Multiple bHLH proteins form heterodimers to mediate CRY2-dependent regulation of flowering-time in Arabidopsis. DOI: 10.1371/journal.pgen.1003861 ; PMID: 24130508
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. DOI: 10.1105/tpc.19.00562 ; PMID: 31806676
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
Gene Resources
- UniProt: A0A178VLY6
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VLY6
- EnsemblPlants: AT3G23690.1
- Gramene: AT3G23690.1
- KEGG: ath:AT3G23690
- Orthologous matrix: TPGFWEN
- ExpressionAtlas: AT3G23690
- InterPro: IPR011598, IPR024097, IPR036638
- PANTHER: PTHR12565, PTHR12565:SF453
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- OrthoDB: A0A178VLY6
- SWISS-MODEL: A0A178VLY6
- Conserved Domain Database: cd18919
Homologs
- Brassica napus GSBRNA2T00142647001, GSBRNA2T00017993001, GSBRNA2T00128358001
- Brassica oleracea XP_013606771.1, XP_013606780.1, XP_013593660.1
- Brassica rapa XP_009106418.1, XP_009102591.1, XP_009102592.1
- Raphanus raphanistrum RrC4586_p1, RrC18477_p1
Sequences
cDNA Sequence
- >AT3G23690.1
AGTCTCTTAACCAAGAATAATCAAACATGATAATTAAAAACAATTTTATCCTTTTGTTTGTTTTCTCTCCCACAACTTTCCTGTCTCTGCCATGCACATGCTCTCTCTCTCTCTCTCTTTCTTCTCTCTTATTCTCACTCCAATGATTACAGAGGCCAGCCTAAGCAGCCTACCCACTTTCACCATCTAATGTTCCCACATTAACATAAAACACACGTAAGATTCTTCTCCTTTTGAACTGTAAAATTCACTCTTTTTTAATTTCTTAATCTTTCTTATCATTACTTTCTCTTTTTTATTTTGTCATTTTCTCTTAAACCTTCTTCTTCTTCTTCCTTTGATCAGTAAAAAAAGTCACCGCCTTCTTCTTCTCTTTCCTCTTTCCCCTAATTGATCAATCATGCTTCTTCATTTCTAGTTCTCTCTTCCTGACTCATTTCCCTCATTAGATCTTCTTCTCCACTAAACCCATAATTGAAAGAAGCTCTTTTTTTGCTTACATTGAAGTTAAAAAATCATCACTTGTTTTGTTTTTGAAGAAACACACATAAAGTTTGTCTTTTTACTTCTCAAATTTGGTTGTTTTCACTCAATTTCAATCTTGCTTTCTGATTCAGATTCTGGGTTTTCTTCAGAATTCCCAGAGAAGTTGTTGGAATTGAATTTTTCACTTTTTTGTTCATAAAAGTTCTAGTCTTTTTAGATGAACATGGACAAGGAAACAGAGCAAACCCTAAATTACTTACCTTTGGGTCAGAGCGATCCCTTTGGCAATGGCAATGAAGGAACAATTGGAGATTTCCTTGGAAGATACTGCAACAACCCTCAGGAGATTTCACCGTTAACTCTACAATCCTTCTCTCTGAATTCTCAGATCTCCGAGAATTTCCCAATCTCTGGTGGAATCAGATTCCCTCCATATCCAGGTCAATTTGGATCCGATCGTGAATTTGGGTCACAACCAACAACGCAGGAGAGTAACAAGAGCTCTTTGTTGGATCCAGATTCAGTTTCGGATCGAGTTCACACCACGAAATCTAACTCTAGAAAGAGGAAGTCGATTCCTAGTGGTAATGGCAAGGAGTCTCCAGCTTCATCGTCTCTTACAGCTTCCAATTCAAAGGTTTCAGGAGAGAATGGTGGATCTAAAGGTGGGAAGAGAAGCAAGCAAGATGTAGCTGGGAGTAGTAAAAACGGAGTAGAGAAGTGCGATAGTAAAGGCGACAATAAGGACGATGCTAAGCCTCCTGAGGCGCCTAAAGATTATATTCATGTCAGAGCTAGAAGGGGTCAAGCAACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGAATGACGTTGCTTCAGGATCTGGTTCCTGGTTGCAACCGGATTACAGGGAAAGCAGTCATGCTTGATGAAATTATAAATTATGTGCAGTCCTTGCAGAGACAAGTTGAGTTCTTGTCCATGAAGCTGGCTACCGTAAATCCAAGGATGGAGTTTAATGCTAATGCTTCTTTATCCACAGAGATGATTCAACCGGGGGAGTCGTTAACGCAGTCTCTTTACGCAATGGCTTGCTCAGAGCAAAGACTTCCATCAGCATACTATTCACTTGGCAAGAACATGCCAAGATTCTCAGACACACAATTCCCCTCAAACGATGGATTTGTTCACACTGAGACACCAGGATTCTGGGAAAATAATGACCTGCAAAGCATTGTTCAGATGGGTTTTGGAGATATCCTCCAGCAACAGAGCAACAACAACAACAACAACTGTTCTGAGCCAACGCTTCAGATGAAGCTTGAACCATAGTCCATAGCTATGATTATTATCTCTGTTGTACATACAGAAAACCAAGTAGTGATGAGTAACGGAGTGAATCATATTGGAATTTTAATGTTTACAATCGTTGCTTCTTTGCTTGTGTCTCTGTTGATTTCTTCTCAACCTTAAACAAAAAAAAAACAAGAAAACTTCAGATTAAGTATGTAAAAATATGACAAGAACTTTTCTCTGTACTGTTTTACAATCGTTATGTATTATGATTGCTCTAAGCTTGTAAGAAACAGGAATAAATTTGTTCACTTCTTTATATTCTTTTCACATTTTCTTACGAAACAAGATTGAGAGTACGAG
CDS Sequence
- >AT3G23690.1
ATGAACATGGACAAGGAAACAGAGCAAACCCTAAATTACTTACCTTTGGGTCAGAGCGATCCCTTTGGCAATGGCAATGAAGGAACAATTGGAGATTTCCTTGGAAGATACTGCAACAACCCTCAGGAGATTTCACCGTTAACTCTACAATCCTTCTCTCTGAATTCTCAGATCTCCGAGAATTTCCCAATCTCTGGTGGAATCAGATTCCCTCCATATCCAGGTCAATTTGGATCCGATCGTGAATTTGGGTCACAACCAACAACGCAGGAGAGTAACAAGAGCTCTTTGTTGGATCCAGATTCAGTTTCGGATCGAGTTCACACCACGAAATCTAACTCTAGAAAGAGGAAGTCGATTCCTAGTGGTAATGGCAAGGAGTCTCCAGCTTCATCGTCTCTTACAGCTTCCAATTCAAAGGTTTCAGGAGAGAATGGTGGATCTAAAGGTGGGAAGAGAAGCAAGCAAGATGTAGCTGGGAGTAGTAAAAACGGAGTAGAGAAGTGCGATAGTAAAGGCGACAATAAGGACGATGCTAAGCCTCCTGAGGCGCCTAAAGATTATATTCATGTCAGAGCTAGAAGGGGTCAAGCAACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGAATGACGTTGCTTCAGGATCTGGTTCCTGGTTGCAACCGGATTACAGGGAAAGCAGTCATGCTTGATGAAATTATAAATTATGTGCAGTCCTTGCAGAGACAAGTTGAGTTCTTGTCCATGAAGCTGGCTACCGTAAATCCAAGGATGGAGTTTAATGCTAATGCTTCTTTATCCACAGAGATGATTCAACCGGGGGAGTCGTTAACGCAGTCTCTTTACGCAATGGCTTGCTCAGAGCAAAGACTTCCATCAGCATACTATTCACTTGGCAAGAACATGCCAAGATTCTCAGACACACAATTCCCCTCAAACGATGGATTTGTTCACACTGAGACACCAGGATTCTGGGAAAATAATGACCTGCAAAGCATTGTTCAGATGGGTTTTGGAGATATCCTCCAGCAACAGAGCAACAACAACAACAACAACTGTTCTGAGCCAACGCTTCAGATGAAGCTTGAACCATAG
Protein Sequence
- >AT3G23690.1
MNMDKETEQTLNYLPLGQSDPFGNGNEGTIGDFLGRYCNNPQEISPLTLQSFSLNSQISENFPISGGIRFPPYPGQFGSDREFGSQPTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNGKESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEFNANASLSTEMIQPGESLTQSLYAMACSEQRLPSAYYSLGKNMPRFSDTQFPSNDGFVHTETPGFWENNDLQSIVQMGFGDILQQQSNNNNNNCSEPTLQMKLEP