Information report for AT3G23250
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Functional Keywords
- shoot axis apex , root , vascular leaf , stamen , sepal , cotyledon , hypocotyl , leaf apex , collective leaf structure
Literature and News
- Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.1998.00278.x ; PMID: 9839469
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The R2R3-MYB gene family in Arabidopsis thaliana. DOI: 10.1016/s1369-5266(00)00199-0 ; PMID: 11597504
- Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. DOI: 10.1074/jbc.M307321200 ; PMID: 12912986
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- 12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. DOI: 10.1104/pp.105.067058 ; PMID: 16258017
- Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c. DOI: 10.1104/pp.105.070110 ; PMID: 16244138
- The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. DOI: 10.1007/s11103-005-2910-y ; PMID: 16463103
- Genome-wide transcriptional analysis of the Arabidopsis thaliana interaction with the plant pathogen Pseudomonas syringae pv. tomato DC3000 and the human pathogen Escherichia coli O157:H7. DOI: 10.1111/j.1365-313X.2006.02725.x ; PMID: 16553894
- The heavy metal hyperaccumulator Thlaspi caerulescens expresses many species-specific genes, as identified by comparative expressed sequence tag analysis. DOI: 10.1111/j.1469-8137.2006.01714.x ; PMID: 16684236
- Bestatin, an inhibitor of aminopeptidases, provides a chemical genetics approach to dissect jasmonate signaling in Arabidopsis. DOI: 10.1104/pp.106.080390 ; PMID: 16798948
- Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes. DOI: 10.1186/1471-2229-6-25 ; PMID: 17038189
- The transcription corepressor LEUNIG interacts with the histone deacetylase HDA19 and mediator components MED14 (SWP) and CDK8 (HEN3) to repress transcription. DOI: 10.1128/MCB.01912-06 ; PMID: 17526732
- Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. DOI: 10.1094/MPMI-20-8-0900 ; PMID: 17722694
- Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis. DOI: 10.1007/s11103-004-2142-6 ; PMID: 15604721
- Comparative transcriptome analysis of Arabidopsis thaliana infested by diamond back moth (Plutella xylostella) larvae reveals signatures of stress response, secondary metabolism, and signalling. DOI: 10.1186/1471-2164-9-154 ; PMID: 18400103
- Transgenic expression of MYB15 confers enhanced sensitivity to abscisic acid and improved drought tolerance in Arabidopsis thaliana. DOI: 10.1016/S1673-8527(09)60003-5 ; PMID: 19161942
- HHP1, a novel signalling component in the cross-talk between the cold and osmotic signalling pathways in Arabidopsis. DOI: 10.1093/jxb/erq162 ; PMID: 20566565
- TaCHP: a wheat zinc finger protein gene down-regulated by abscisic acid and salinity stress plays a positive role in stress tolerance. DOI: 10.1104/pp.110.161182 ; PMID: 20639406
- Thirty-seven transcription factor genes differentially respond to a harpin protein and affect resistance to the green peach aphid in Arabidopsis. DOI: 10.1007/s12038-010-0049-8 ; PMID: 20826953
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana. DOI: 10.1111/pce.12252 ; PMID: 24329757
- CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana. DOI: 10.1007/s11103-015-0324-z ; PMID: 25948280
- Exogenous isoprene modulates gene expression in unstressed Arabidopsis thaliana plants. DOI: 10.1111/pce.12660 ; PMID: 26477606
- Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis. DOI: 10.1093/nar/gkx417 ; PMID: 28510716
- TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. DOI: 10.1104/pp.17.00568 ; PMID: 28827455
- Integrated bioinformatics analysis of As, Au, Cd, Pb and Cu heavy metal responsive marker genes through Arabidopsis thaliana GEO datasets. DOI: 10.7717/peerj.6495 ; PMID: 30918749
- PUB25 and PUB26 Promote Plant Freezing Tolerance by Degrading the Cold Signaling Negative Regulator MYB15. DOI: 10.1016/j.devcel.2019.08.008 ; PMID: 31543444
- The SWI/SNF ATP-Dependent Chromatin Remodeling Complex in Arabidopsis Responds to Environmental Changes in Temperature-Dependent Manner. DOI: 10.3390/ijms21030762 ; PMID: 31979421
- Dual-Localized WHIRLY1 Affects Salicylic Acid Biosynthesis via Coordination of ISOCHORISMATE SYNTHASE1, PHENYLALANINE AMMONIA LYASE1, and S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE1. DOI: 10.1104/pp.20.00964 ; PMID: 32900979
- The Arabidopsis R2R3 MYB Transcription Factor MYB15 Is a Key Regulator of Lignin Biosynthesis in Effector-Triggered Immunity. DOI: 10.3389/fpls.2020.583153 ; PMID: 33042196
- PUB25 and PUB26 dynamically modulate ICE1 stability via differential ubiquitination during cold stress in Arabidopsis. DOI: 10.1093/plcell/koad159 ; PMID: 37279565
- Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.1998.00278.x ; PMID: 9839469
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. DOI: 10.1007/s11103-005-2910-y ; PMID: 16463103
- Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. DOI: 10.1094/MPMI-20-8-0900 ; PMID: 17722694
Gene Resources
- UniProt: F4J2X8
- EMBL: CP002686
- AlphaFoldDB: F4J2X8
- EnsemblPlants: AT3G23250.2
- Gramene: AT3G23250.2
- ExpressionAtlas: AT3G23250
- InterPro: IPR001005, IPR009057, IPR017930
- PANTHER: PTHR47997, PTHR47997:SF28
- SUPFAM: SSF46689
- PROSITE: PS50090, PS51294
- Gene3D: 1.10.10.60
- OrthoDB: F4J2X8
- SWISS-MODEL: F4J2X8
- Conserved Domain Database: cd00167
Homologs
- Brassica napus GSBRNA2T00128429001, GSBRNA2T00142540001, GSBRNA2T00154860001, GSBRNA2T00001084001
- Brassica oleracea XP_013626405.1, XP_013596435.1, XP_013584092.1
- Brassica rapa XP_009135852.1, XP_009102644.1, XP_009108088.1
- Raphanus raphanistrum RrC8202_p1, RrC1621_p1, RrC8876_p1
Sequences
cDNA Sequence
- >AT3G23250.2
TGTAAAACATACTTTTGACTATGTTGCCAATAATCAAAAAGACATCTCTCTCTCTCTCTCTCACATCCTATTTTCCAAGAAGCTCACCAATGCTTTTGAATTCTCCCACATGTCTTTTGACAATTTTAGTATAAATACTCAAACCCCTTAGTCAGTCATTCTCATGTTCATCAACAGCATTTGATCTCAAGCTCATAGGAATTTGATCTCCACATTATATCTTGATCATCACCACAAGAAAAACATTTCAACTTCTTTTATCAGCAATCACAAATCAAAGAGATGGGAAGAGCTCCATGCTGTGAGAAGATGGGGTTGAAGAGAGGACCATGGACACCTGAAGAAGATCAAATCTTGGTCTCTTTTATCCTCAACCATGGACATAGTAACTGGCGAGCCCTCCCTAAGCAAGCTGGTATGTAAAAATTATAATATCAAATTTCTTAATTTTGATCAAATTTCTTACATTAATTATTGGTAATTATTATTTACAGGTCTTTTGAGATGTGGAAAAAGCTGTAGACTTAGGTGGATGAACTATTTAAAGCCTGATATTAAACGTGGCAATTTCACCAAAGAAGAGGAAGATGCTATCATCAGCTTACACCAAATACTTGGCAATAGATGGTCAGCGATTGCAGCAAAACTGCCTGGAAGAACCGATAACGAGATCAAGAACGTATGGCACACTCACTTGAAGAAGAGACTCGAAGATTATCAACCAGCTAAACCTAAGACCAGCAACAAAAAGAAGGGTACTAAACCAAAATCTGAATCCGTAATAACGAGCTCGAACAGTACTAGAAGCGAATCGGAGCTAGCAGATTCATCAAACCCTTCTGGAGAAAGCTTATTTTCGACATCGCCTTCGACAAGTGAGGTTTCTTCGATGACACTCATAAGCCACGACGGCTATAGCAACGAGATTAATATGGATAACAAACCGGGAGATATCAGTACTATCGATCAAGAATGTGTTTCTTTCGAAACTTTTGGTGCGGATATCGATGAAAGCTTCTGGAAAGAGACACTGTATAGCCAAGATGAACACAACTACGTATCGAATGACCTAGAAGTGGCTGGTTTAGTTGAGATACAACAAGAGTTTCAAAACTTGGGCTCCGCTAATAATGAGATGATTTTTGACAGTGAGATGGACTTCTGGTTCGATGTATTGGCTAGAACCGGCGGGGAACAAGATCTCTTAGCCGGGCTCTAGTTAACATGTTTGAGGAGTAAAGTGAAATGGTGCAAATTAGTTAAGGCTAAGAAATTCAAAAGCTTTTGTTTACCGAGAAAAAAACACACTCTAACTCTTGATGTGATGTAGTTAGTGTATTAATTAGAGGCTGCGTTTTCAAAAAATTGAATTCATTTGTTTCTCCAAAATTGAGTAGTTTAGCTTGTACGAGTAATTAATA - >AT3G23250.1
TGTAAAACATACTTTTGACTATGTTGCCAATAATCAAAAAGACATCTCTCTCTCTCTCTCTCACATCCTATTTTCCAAGAAGCTCACCAATGCTTTTGAATTCTCCCACATGTCTTTTGACAATTTTAGTATAAATACTCAAACCCCTTAGTCAGTCATTCTCATGTTCATCAACAGCATTTGATCTCAAGCTCATAGGAATTTGATCTCCACATTATATCTTGATCATCACCACAAGAAAAACATTTCAACTTCTTTTATCAGCAATCACAAATCAAAGAGATGGGAAGAGCTCCATGCTGTGAGAAGATGGGGTTGAAGAGAGGACCATGGACACCTGAAGAAGATCAAATCTTGGTCTCTTTTATCCTCAACCATGGACATAGTAACTGGCGAGCCCTCCCTAAGCAAGCTGGTATGTAAAAATTATAATATCAAATTTCTTAATTTTGATCAAATTTCTTACATTAATTATTGGTAATTATTATTTACAGGTCTTTTGAGATGTGGAAAAAGCTGTAGACTTAGGTGGATGAACTATTTAAAGCCTGATATTAAACGTGGCAATTTCACCAAAGAAGAGGAAGATGCTATCATCAGCTTACACCAAATACTTGGCAATAGATGGTCAGCGATTGCAGCAAAACTGCCTGGAAGAACCGATAACGAGATCAAGAACGTATGGCACACTCACTTGAAGAAGAGACTCGAAGATTATCAACCAGCTAAACCTAAGACCAGCAACAAAAAGAAGGGTACTAAACCAAAATCTGAATCCGTAATAACGAGCTCGAACAGTACTAGAAGCGAATCGGAGCTAGCAGATTCATCAAACCCTTCTGGAGAAAGCTTATTTTCGACATCGCCTTCGACAAGTGAGGTTTCTTCGATGACACTCATAAGCCACGACGGCTATAGCAACGAGATTAATATGGATAACAAACCGGGAGATATCAGTACTATCGATCAAGAATGTGTTTCTTTCGAAACTTTTGGTGCGGATATCGATGAAAGCTTCTGGAAAGAGACACTGTATAGCCAAGATGAACACAACTACGTATCGAATGACCTAGAAGTGGCTGGTTTAGTTGAGATACAACAAGAGTTTCAAAACTTGGGCTCCGCTAATAATGAGATGATTTTTGACAGTGAGATGGACTTCTGGTTCGATGTATTGGCTAGAACCGGCGGGGAACAAGATCTCTTAGCCGGGCTCTAGTTAACATGTTTGAGGAGTAAAGTGAAATGGTGCAAATTAGTTAAGGCTAAGAAATTCAAAAGCTTTTGTTTACCGAGAAAAAAACACACTCTAACTCTTGATGTGATGTAGTTAGTGTATTAATTAGAGGCTGCGTTTTCAAAAAATTGAATTCATTTGTTTCTCCAAAATTGAGTAGTTTAGCTTGTACGAGTAATTAATA
CDS Sequence
- >AT3G23250.2
ATGAACTATTTAAAGCCTGATATTAAACGTGGCAATTTCACCAAAGAAGAGGAAGATGCTATCATCAGCTTACACCAAATACTTGGCAATAGATGGTCAGCGATTGCAGCAAAACTGCCTGGAAGAACCGATAACGAGATCAAGAACGTATGGCACACTCACTTGAAGAAGAGACTCGAAGATTATCAACCAGCTAAACCTAAGACCAGCAACAAAAAGAAGGGTACTAAACCAAAATCTGAATCCGTAATAACGAGCTCGAACAGTACTAGAAGCGAATCGGAGCTAGCAGATTCATCAAACCCTTCTGGAGAAAGCTTATTTTCGACATCGCCTTCGACAAGTGAGGTTTCTTCGATGACACTCATAAGCCACGACGGCTATAGCAACGAGATTAATATGGATAACAAACCGGGAGATATCAGTACTATCGATCAAGAATGTGTTTCTTTCGAAACTTTTGGTGCGGATATCGATGAAAGCTTCTGGAAAGAGACACTGTATAGCCAAGATGAACACAACTACGTATCGAATGACCTAGAAGTGGCTGGTTTAGTTGAGATACAACAAGAGTTTCAAAACTTGGGCTCCGCTAATAATGAGATGATTTTTGACAGTGAGATGGACTTCTGGTTCGATGTATTGGCTAGAACCGGCGGGGAACAAGATCTCTTAGCCGGGCTCTAG - >AT3G23250.1
ATGAACTATTTAAAGCCTGATATTAAACGTGGCAATTTCACCAAAGAAGAGGAAGATGCTATCATCAGCTTACACCAAATACTTGGCAATAGATGGTCAGCGATTGCAGCAAAACTGCCTGGAAGAACCGATAACGAGATCAAGAACGTATGGCACACTCACTTGAAGAAGAGACTCGAAGATTATCAACCAGCTAAACCTAAGACCAGCAACAAAAAGAAGGGTACTAAACCAAAATCTGAATCCGTAATAACGAGCTCGAACAGTACTAGAAGCGAATCGGAGCTAGCAGATTCATCAAACCCTTCTGGAGAAAGCTTATTTTCGACATCGCCTTCGACAAGTGAGGTTTCTTCGATGACACTCATAAGCCACGACGGCTATAGCAACGAGATTAATATGGATAACAAACCGGGAGATATCAGTACTATCGATCAAGAATGTGTTTCTTTCGAAACTTTTGGTGCGGATATCGATGAAAGCTTCTGGAAAGAGACACTGTATAGCCAAGATGAACACAACTACGTATCGAATGACCTAGAAGTGGCTGGTTTAGTTGAGATACAACAAGAGTTTCAAAACTTGGGCTCCGCTAATAATGAGATGATTTTTGACAGTGAGATGGACTTCTGGTTCGATGTATTGGCTAGAACCGGCGGGGAACAAGATCTCTTAGCCGGGCTCTAG
Protein Sequence
- >AT3G23250.2
MNYLKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLEDYQPAKPKTSNKKKGTKPKSESVITSSNSTRSESELADSSNPSGESLFSTSPSTSEVSSMTLISHDGYSNEINMDNKPGDISTIDQECVSFETFGADIDESFWKETLYSQDEHNYVSNDLEVAGLVEIQQEFQNLGSANNEMIFDSEMDFWFDVLARTGGEQDLLAGL - >AT3G23250.1
MNYLKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLEDYQPAKPKTSNKKKGTKPKSESVITSSNSTRSESELADSSNPSGESLFSTSPSTSEVSSMTLISHDGYSNEINMDNKPGDISTIDQECVSFETFGADIDESFWKETLYSQDEHNYVSNDLEVAGLVEIQQEFQNLGSANNEMIFDSEMDFWFDVLARTGGEQDLLAGL