Information report for AT3G23210
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen tube cell , pollen
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
- The Arabidopsis basic/helix-loop-helix transcription factor family. DOI: 10.1105/tpc.013839 ; PMID: 12897250
- Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. DOI: 10.1105/tpc.151140 ; PMID: 14600211
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots. DOI: 10.1105/tpc.110.074096 ; PMID: 20675571
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. DOI: 10.1093/jxb/erx043 ; PMID: 28369511
- The G-Box Transcriptional Regulatory Code in Arabidopsis. DOI: 10.1104/pp.17.01086 ; PMID: 28864470
- Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. DOI: 10.3389/fpls.2017.02100 ; PMID: 29321786
- The Transcription Factor bHLH121 Interacts with bHLH105 (ILR3) and Its Closest Homologs to Regulate Iron Homeostasis in Arabidopsis. DOI: 10.1105/tpc.19.00541 ; PMID: 31776233
- A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. DOI: 10.1105/tpc.19.00562 ; PMID: 31806676
- bHLH11 inhibits bHLH IVc proteins by recruiting the TOPLESS/TOPLESS-RELATED corepressors. DOI: 10.1093/plphys/kiab540 ; PMID: 34894263
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
Gene Resources
- UniProt: A0A1I9LTF0
- EMBL: CP002686
- AlphaFoldDB: A0A1I9LTF0
- EnsemblPlants: AT3G23210.2
- Gramene: AT3G23210.2
- Orthologous matrix: KEQELVC
- ExpressionAtlas: AT3G23210
- InterPro: IPR011598, IPR036638, IPR044818
- PANTHER: PTHR46133, PTHR46133:SF7
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- OrthoDB: A0A1I9LTF0
- SWISS-MODEL: A0A1I9LTF0
- Conserved Domain Database: cd11446
Homologs
- Brassica napus GSBRNA2T00142534001, GSBRNA2T00128434001, GSBRNA2T00001048001, GSBRNA2T00058547001
- Brassica oleracea XP_013594063.1, XP_013639210.1
- Brassica rapa XP_009102650.1
- Raphanus raphanistrum RrC7859_p2
Sequences
cDNA Sequence
- >AT3G23210.2
GAATAAAATTTGGTTTAAAATTCCAAAATTCTCTCAAATCTTTAATATATATTTTCCAATAACAAAAGATATATATCTCCTCAAATTTTCTAGGGAATACAGTATTTGTGTGTTTGAGACAGATTTTTGCAGATTCTCTCGTTCTGCATTCTCTGTTCTTCTTCTGATGTATCCATCAATCGAAGACGATGATGATCTTCTCGCTGCTCTTTGTTTTGATCAAAGGTTTGATTTTTATTGTTGAATTGTGTTGTATTGTGCCTTTTGTTATTTGGGTTTCTTAACAATTCCAAATTTCAATCCAATTTTAGCAAAAGTTTCGATTTTGAATATGAAAAGTTTTTCTAGCGGTCGTTATTGTTGTTGATGGAGATTGTTGTTACCTTGATTCTGTAGCAATGGAGTAGAAGATCCTTATGGATATATGCAAACAAATGAAGATAACATATTTCAGGATTTTGGGTCTTGTGGTGTGAATCTGATGCAGCCACAACAAGAACAATTTGATTCTTTTAATGGAAATCTTGAGCAAGTTTGTAGTAGCTTTAGAGGAGGAAACAATGGAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTGGAGTTTTGCAGCAAGAGACACATCAAGTCTGTGGCTTTAGAGGACAAAACGACGATTCTGCAGTGCCTCATTTGCAGCAGCAACAAGGACAGGTGTTTAGTGGTGTAGTGGAAATCAATTCTTCGTCATCTGTTGGAGCTGTTAAGGAAGAGTTTGAGGAAGAATGTTCGGGGAAGAGGAGACGAACTGGATCATGTAGCAAGCCAGGAACCAAAGCCTGTCGCGAGAAACTAAGAAGGGAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTAGAGCCTGGCAGGACTCCAAAGACGGATAAATCAGCTATACTCGACGATGCAATCCGGGTTGTGAATCAGCTTAGAGGTGAAGCTCATGAGCTTCAAGAAACCAACCAAAAGCTTCTAGAAGAGATCAAGAGTCTAAAGGCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGATGGAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATCCAGCAGCTTTCCATTCCCATAAGATGGCGGTGGCTTACCCTTACGGCTACTATCCTCCAAACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCTCAAAAATCTTCCTCCTGTTGCTTAATCTTCTTCATGTTGATTCATCATTGATCATTGTTATCAATCCCTTAGGAATTTTTGTTCCTTCAGATGATTCTTTAATCAGTAGTTTTGCAGTAACCATTTGGAGATTAGAGAATTTTATGATTTGAATAAAATGTCAGTTTCCTGGTGGAAATAGATTAATTCGAAAATGTATGACACCAGATGTAGAAGAAATAAAAAAATGAAGGAGTATTTTGT - >AT3G23210.1
GAATAAAATTTGGTTTAAAATTCCAAAATTCTCTCAAATCTTTAATATATATTTTCCAATAACAAAAGATATATATCTCCTCAAATTTTCTAGGGAATACAGTATTTGTGTGTTTGAGACAGATTTTTGCAGATTCTCTCGTTCTGCATTCTCTGTTCTTCTTCTGATGTATCCATCAATCGAAGACGATGATGATCTTCTCGCTGCTCTTTGTTTTGATCAAAGGTTTGATTTTTATTGTTGAATTGTGTTGTATTGTGCCTTTTGTTATTTGGGTTTCTTAACAATTCCAAATTTCAATCCAATTTTAGCAAAAGTTTCGATTTTGAATATGAAAAGTTTTTCTAGCGGTCGTTATTGTTGTTGATGGAGATTGTTGTTACCTTGATTCTGTAGCAATGGAGTAGAAGATCCTTATGGATATATGCAAACAAATGAAGATAACATATTTCAGGATTTTGGGTCTTGTGGTGTGAATCTGATGCAGCCACAACAAGAACAATTTGATTCTTTTAATGGAAATCTTGAGCAAGTTTGTAGTAGCTTTAGAGGAGGAAACAATGGAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTGGAGTTTTGCAGCAAGAGACACATCAAGTCTGTGGCTTTAGAGGACAAAACGACGATTCTGCAGTGCCTCATTTGCAGCAGCAACAAGGACAGGTGTTTAGTGGTGTAGTGGAAATCAATTCTTCGTCATCTGTTGGAGCTGTTAAGGAAGAGTTTGAGGAAGAATGTTCGGGGAAGAGGAGACGAACTGGATCATGTAGCAAGCCAGGAACCAAAGCCTGTCGCGAGAAACTAAGAAGGGAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTAGAGCCTGGCAGGACTCCAAAGACGGATAAATCAGCTATACTCGACGATGCAATCCGGGTTGTGAATCAGCTTAGAGGTGAAGCTCATGAGCTTCAAGAAACCAACCAAAAGCTTCTAGAAGAGATCAAGAGTCTAAAGGCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGATGGAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATCCAGCAGCTTTCCATTCCCATAAGATGGCGGTGGCTTACCCTTACGGCTACTATCCTCCAAACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCTCAAAAATCTTCCTCCTGTTGCTTAATCTTCTTCATGTTGATTCATCATTGATCATTGTTATCAATCCCTTAGGAATTTTTGTTCCTTCAGATGATTCTTTAATCAGTAGTTTTGCAGTAACCATTTGGAGATTAGAGAATTTTATGATTTGAATAAAATGTCAGTTTCCTGGTGGAAATAGATTAATTCGAAAATGTATGACACCAGATGTAGAAGAAATAAAAAAATGAAGGAGTATTTTGT
CDS Sequence
- >AT3G23210.2
ATGCAAACAAATGAAGATAACATATTTCAGGATTTTGGGTCTTGTGGTGTGAATCTGATGCAGCCACAACAAGAACAATTTGATTCTTTTAATGGAAATCTTGAGCAAGTTTGTAGTAGCTTTAGAGGAGGAAACAATGGAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTGGAGTTTTGCAGCAAGAGACACATCAAGTCTGTGGCTTTAGAGGACAAAACGACGATTCTGCAGTGCCTCATTTGCAGCAGCAACAAGGACAGGTGTTTAGTGGTGTAGTGGAAATCAATTCTTCGTCATCTGTTGGAGCTGTTAAGGAAGAGTTTGAGGAAGAATGTTCGGGGAAGAGGAGACGAACTGGATCATGTAGCAAGCCAGGAACCAAAGCCTGTCGCGAGAAACTAAGAAGGGAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTAGAGCCTGGCAGGACTCCAAAGACGGATAAATCAGCTATACTCGACGATGCAATCCGGGTTGTGAATCAGCTTAGAGGTGAAGCTCATGAGCTTCAAGAAACCAACCAAAAGCTTCTAGAAGAGATCAAGAGTCTAAAGGCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGATGGAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATCCAGCAGCTTTCCATTCCCATAAGATGGCGGTGGCTTACCCTTACGGCTACTATCCTCCAAACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCTCAAAAATCTTCCTCCTGTTGCTTAA - >AT3G23210.1
ATGCAAACAAATGAAGATAACATATTTCAGGATTTTGGGTCTTGTGGTGTGAATCTGATGCAGCCACAACAAGAACAATTTGATTCTTTTAATGGAAATCTTGAGCAAGTTTGTAGTAGCTTTAGAGGAGGAAACAATGGAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTGGAGTTTTGCAGCAAGAGACACATCAAGTCTGTGGCTTTAGAGGACAAAACGACGATTCTGCAGTGCCTCATTTGCAGCAGCAACAAGGACAGGTGTTTAGTGGTGTAGTGGAAATCAATTCTTCGTCATCTGTTGGAGCTGTTAAGGAAGAGTTTGAGGAAGAATGTTCGGGGAAGAGGAGACGAACTGGATCATGTAGCAAGCCAGGAACCAAAGCCTGTCGCGAGAAACTAAGAAGGGAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTAGAGCCTGGCAGGACTCCAAAGACGGATAAATCAGCTATACTCGACGATGCAATCCGGGTTGTGAATCAGCTTAGAGGTGAAGCTCATGAGCTTCAAGAAACCAACCAAAAGCTTCTAGAAGAGATCAAGAGTCTAAAGGCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGATGGAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATCCAGCAGCTTTCCATTCCCATAAGATGGCGGTGGCTTACCCTTACGGCTACTATCCTCCAAACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCTCAAAAATCTTCCTCCTGTTGCTTAA
Protein Sequence
- >AT3G23210.2
MQTNEDNIFQDFGSCGVNLMQPQQEQFDSFNGNLEQVCSSFRGGNNGVVYSSSIGSAQLDLAASFSGVLQQETHQVCGFRGQNDDSAVPHLQQQQGQVFSGVVEINSSSSVGAVKEEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMPSQHPAAFHSHKMAVAYPYGYYPPNMPMWSPLPPADRDTSRDLKNLPPVA - >AT3G23210.1
MQTNEDNIFQDFGSCGVNLMQPQQEQFDSFNGNLEQVCSSFRGGNNGVVYSSSIGSAQLDLAASFSGVLQQETHQVCGFRGQNDDSAVPHLQQQQGQVFSGVVEINSSSSVGAVKEEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMPSQHPAAFHSHKMAVAYPYGYYPPNMPMWSPLPPADRDTSRDLKNLPPVA