Information report for AT3G22680
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- and AGO4-associated protein acts in RNA-directed DNA methylation. DOI: 10.1038/nature09025 ; PMID: 20410883
- directed DNA methylation in Arabidopsis. DOI: 10.1016/j.cub.2010.03.062 ; PMID: 20409711
- Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet. DOI: 10.1016/j.jtbi.2011.01.047 ; PMID: 21333657
- RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats. DOI: 10.4161/epi.20290 ; PMID: 22647529
- Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. DOI: 10.1016/j.cell.2012.10.054 ; PMID: 23313553
- The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci. DOI: 10.1371/journal.pgen.1003948 ; PMID: 24465213
- Angiosperms Are Unique among Land Plant Lineages in the Occurrence of Key Genes in the RNA-Directed DNA Methylation (RdDM) Pathway. DOI: 10.1093/gbe/evv171 ; PMID: 26338185
- Comparative Analysis of Arabidopsis Ecotypes Reveals a Role for Brassinosteroids in Root Hydrotropism. DOI: 10.1104/pp.17.01563 ; PMID: 29439211
- Anaphase-promoting complex/cyclosome regulates RdDM activity by degrading DMS3 in Arabidopsis. DOI: 10.1073/pnas.1816652116 ; PMID: 30760603
- CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. DOI: 10.1038/s41467-019-11759-9 ; PMID: 31477705
- Involvement of MEM1 in DNA demethylation in Arabidopsis. DOI: 10.1007/s11103-019-00949-0 ; PMID: 31902068
- Roles of IDM3 and SDJ1/2/3 in Establishment and/or Maintenance of DNA Methylation in Arabidopsis. DOI: 10.1093/pcp/pcab091 ; PMID: 34185870
- Genetic analysis implicates a molecular chaperone complex in regulating epigenetic silencing of methylated genomic regions. DOI: 10.1111/jipb.13155 ; PMID: 34289245
- BPM1 regulates RdDM-mediated DNA methylation via a cullin 3 independent mechanism. DOI: 10.1007/s00299-022-02911-9 ; PMID: 36066603
- Regulatory mechanism of a heat-activated retrotransposon by DDR complex in Arabidopsis thaliana. DOI: 10.3389/fpls.2022.1048957 ; PMID: 36618621
- RETINOBLASTOMA-RELATED interactions with key factors of the RNA-directed DNA methylation (RdDM) pathway and its influence on root development. DOI: 10.1007/s00425-023-04135-x ; PMID: 37120771
Gene Resources
- UniProt: A0A178VFE4
- EMBL: CACSHJ010000089, LR881468, LUHQ01000003
- AlphaFoldDB: A0A178VFE4
- EnsemblPlants: AT3G22680.1
- Gramene: AT3G22680.1
- KEGG: ath:AT3G22680
- Orthologous matrix: QCTSHIH
- ExpressionAtlas: AT3G22680
- InterPro: IPR015270, IPR036319
- PANTHER: PTHR36366, PTHR36366:SF1
- SUPFAM: SSF109920
- Gene3D: 1.20.120.690
- OrthoDB: A0A178VFE4
- SWISS-MODEL: A0A178VFE4
Sequences
cDNA Sequence
- >AT3G22680.1
AAGACATGAAAACTTGTGACAAATTGATTCATTTCATTTTAGTAAAGGTCACATGATTTGAGATCTAACATAGTATAAGAGTATCATTCAACAGAAAGGAAAACAAAACTTTGAGCCAAGGCTCCAAAACTCTAATCTCTACGAAACAGATAAAGGACTGTGAGAATCAATCATTGTTTTCGATTGAACCAAACTCTGAATCTTGAGTTTTGCTTCTGCCATATTTTTCTTCTCAAGCTCATCTACCAACATTTTGCAAGTGCTATCTCTAGGAACCATTCCTTTTCGTACTGCTTCCTCAAAGAACAAGCAAGCTTCTTCAACTTTCCCGCTCATACATAACCCTCTAATGAGAAGAATATATGTCGAAACATCGATACTAACATCGTTTTTCACCATGTGATGCAATAATATTCCAAGTAGCTTCATTTTCTTCTTATGGCAACACATCTTCAACAATGGAGCATAAGTCTCAACGTTTGGACTACATGATTCCCCCTCCTCATCCTCCATCCTTTTAAGCAAACGTAGAGCCATCTCATCTCGTGAGTGATGAAGCGCAGCGGAAATCATGGTATTGTAGACTAAAACATCACGACGAACTCCTTGATTCGTCATGTCCTCAAATATCTCAGCTGCATCCTTAAACCTACCAGTCTTCGACAAAATATGTATCAATGAGCTATAAAACTTAGCATCAGGAACACAACCATCTTCTTTCATCTTCTCATACACTCCTAAAGCTTCAGCTACTTGTTTAGATTTACCCAAAGAATGCATCACAATAGTATAAGTCACAACATTAGGATTACACCCATTCTCTCGCATCTCTTCCAACATTTCATTAACCCTCCTAAAATCCCCTTCCTTGCAATAAGCTTCCACAAAGCTAGTGTAAGTAACAACATCAGGAGTGAACTCAGTAACCTTCATCAAATCCATCATCGCTCTAGCATCATCAAATTTCCGAGCTTTACAAAAACCGTGAATCAAAATGTTGAATGTCCGCGCATCCGGCTTGATTGTATCGAAAAGCTTCAGAAAAACTTCATGAGCATGCTCTATACTATTCTCTTTCACAAGTGCATCCATCAAACTGTTCATAGCAATAGTATCTGTTTTCACACCATAACTCTTCTCCATCTCTAAAAAAGCATCAACAGCTTTATTATATTTCCCTGACTTGGCCAATCTCCTCATAACCTTACTCATCGTATCAAGCGTAACAAGCTTAGATTCTTCATTCTTGTTCATCTCATTGACTAATTCCCACATCAAATCAAAATTCCTACATTTCCCCAACACATCAACCATTGCATTATAAGTATGACCTGAATGCACATAACCTGTTTGTGAATTTGCCCAAATGAAAAACCCGTAAGCTTGATTCCAACCATTACTAAACCTTCTTAGAACTTGCAAAACCAAACTCTCTGTAACCACCACATCGCATTTACTCAACTCTTTAACAACATCCTCATGAGACGTGTCCTTCTTATTCAAAAAGTCGCAAACTTTATCAATATCTTCCACTGGTTTCTTCACTACATTTCCCTCTGAGACTTGTTGACGACTAAACTTCTGGCTCTCGACCCAATTCGCCAAAGAAGGGATAACAAAATCTTCATCATCTTTGGAAACCGAACTCGATGAAGAAGAAGGCTTGTTTGATAGAAAGTCTTTAATCCAAGACGGTAGCTCCGGTGACTCTGCGGCAACAATCGGCGACTCCTCTGCAGTGTTATTCGTTACCAGAAACCTCCGTTGGAAGATTCTCCGAGGTAAAGTATACGAAACAAGCTTACTAATCCTAAGCTTAGTGAGCATTTTGTTCCGTTTGAATCTAAACGCAGACTTCTCTCCTGTTTTTCCGATCAAAGTTCGAATCTTTTAGACCTAAAGCTTGCTGCTTTGTGCCGGGTCGGGTCGGTTCGTTAATTGGTACAACCCCGGTTCGATTTAATTTAATTTAGCGTTTAGATTTTTGGTTTACCCCACATCTGACAAGTGACGATTTTTACTGACACGTGTACAAGTCATTCTCTTCGTCTTCTTCCTCTAAAAACCCTAATTTTAAGGAACCTCGTGTGGTCATCGTCTTCGTACCTTTCTGCTTTCTACGCCGTCAAAATCTAACTGCTCGACAGTGACCATGCAAAGCTCAATGACAATGGAACTACGACCATCAGGTGATTCCGGTTCATCTGACGTCGATGCTGAGATCAGCGATGGCTTTTCACCGCTCGATACTTCTCACAGAGACGTCGCTGATGAAGGTTCGTTGCTGAGAAGAGCAGAGATGTATCAAGACTACATGAAGCAAGTACCAATCCCGACGAATCGTGGCTCGTTGATTCCGTTCACAAGCTGGGTTGGATTAAGCATTTCAATGAAACAGCTTTATGGTCAGCCTCTACATTACCTCACGAATGTTCTCTTACAACGATGGGATCAATCACGATTCGGTACTGATTCTGAAGAACAGAGGTTGGATTCTATCATTCATCCTACTAAAGCTGAAGCTACTATCTGGCTTGTTGAAGAGATTCATCGACTCACTCCTTCTCATCTTCACATGGCTCTTCTTTGGAGATCTGATCCTATGTATCACTCTTTCATTGACCCAATCTTTCCTGAGAAATGAACAAGTTCTTGAATTGTGATGAACCATCCTTTTTTGTATCTACTTTTGCTTTTAGAAACCTTGTTCAAGCATTGAAGCTTATATGTATAATTGCAGGGTCTTATTCAATAAAATGTGAATCTTCCTTTCCATCT
CDS Sequence
- >AT3G22680.1
ATGCAAAGCTCAATGACAATGGAACTACGACCATCAGGTGATTCCGGTTCATCTGACGTCGATGCTGAGATCAGCGATGGCTTTTCACCGCTCGATACTTCTCACAGAGACGTCGCTGATGAAGGTTCGTTGCTGAGAAGAGCAGAGATGTATCAAGACTACATGAAGCAAGTACCAATCCCGACGAATCGTGGCTCGTTGATTCCGTTCACAAGCTGGGTTGGATTAAGCATTTCAATGAAACAGCTTTATGGTCAGCCTCTACATTACCTCACGAATGTTCTCTTACAACGATGGGATCAATCACGATTCGGTACTGATTCTGAAGAACAGAGGTTGGATTCTATCATTCATCCTACTAAAGCTGAAGCTACTATCTGGCTTGTTGAAGAGATTCATCGACTCACTCCTTCTCATCTTCACATGGCTCTTCTTTGGAGATCTGATCCTATGTATCACTCTTTCATTGACCCAATCTTTCCTGAGAAATGA
Protein Sequence
- >AT3G22680.1
MQSSMTMELRPSGDSGSSDVDAEISDGFSPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPEK