Information report for AT3G22300
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Functional Keywords
Literature and News
- Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome. DOI: 10.1105/tpc.010009 ; PMID: 12837951
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. DOI: 10.1104/pp.103.033910 ; PMID: 14730085
- Comparative analysis of bacterial-origin genes for plant mitochondrial ribosomal proteins. DOI: 10.1093/molbev/msj080 ; PMID: 16368778
- Chromosomal clustering of nuclear genes encoding mitochondrial and chloroplast proteins in Arabidopsis. DOI: 10.1016/j.tig.2006.09.002 ; PMID: 16979780
- DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus. DOI: 10.1186/1471-2229-12-157 ; PMID: 22937923
- Deficiency of mitoribosomal S10 protein affects translation and splicing in Arabidopsis mitochondria. DOI: 10.1093/nar/gkz1069 ; PMID: 31732734
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
Gene Resources
- UniProt: A0A178V7J4
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178V7J4
- EnsemblPlants: AT3G22300.1
- Gramene: AT3G22300.1
- KEGG: ath:AT3G22300
- Orthologous matrix: QAWCLPP
- ExpressionAtlas: AT3G22300
- InterPro: IPR001848, IPR027486, IPR036838
- PANTHER: PTHR11700
- SUPFAM: SSF54999
- Gene3D: 3.30.70.600
- OrthoDB: A0A178V7J4
- SWISS-MODEL: A0A178V7J4
Sequences
cDNA Sequence
- >AT3G22300.1
CTGATTTCGCTTACTCTTTCACTGAAACCCTAATTTGGGGTTTTTCAGATTTCCTTCAATCTCTCGTCGTCATTTCTTCGTCTCACCGTTGAATCTGAAAATGATCGCCGGAGTATTGCGCCGATCTTCACTCCCGTCGAGGCAGACTCTCTCCGCCGCGTTAGCCTCCTTCAATTCGTGTATTTCGCACAATCTCACTCCAGCCACCACCGGAGCTTCCGTCAGCTCTCGATTCACTCTCGCGTCGTCTCCTAACTCGTTTGGCATCAGAGCGAGGAACATCCACATTAGATCTGAGCCGTCGATGATTGTTCCCGCAGGAATCGCGTCACAAGGTTACGCCACTGTCACAAAGGATCGCAAAAACGAGATTAAGAAAGCTAAGATTAAAATTTCTCCAGACAATGTCAGACCATTGAGTAGGAAGGAGATCGCTCTCCAGAAAGAGGCAGCAGAAGAAAGCACATCAAAGATAAAAGGAACAAAGATTTGTATAGCGATTCGGTCTTTTGTTAACCCGGAAAAGCAAGCTTGGTGTCTTCCTCCTCACACTCGTAAAGTCGCAATGCCCGATACACGAACTCTGTACACGGTGCTAAGATCGCCTCACGTCGATAAGAAGTCTAGAGAACAGTTTGAGATGAGGTTCAAGAAACGGTTTCTTGTCATCAAAGCTCAGAGTCATGAGTTGAGCAAGAAGCTGTTTTGGTTAAAACGTTATCGTATTCTTGGAGCTCAATATGAACTCCAGTTCCATTGCAAGACCCGTTTGGATATGACTCAAGTGTTAGGCAACATCAATGGCTCCACCACCAATGCTTACTGAGATGGCTAAAGACATCATTTTGTAGAAGTTTCAAGACCCAACCGGGTACTATGCAATAATTTCGAACCTTACGGATCCATGAAACCAGCTTTGCTTCACATCAGATCAAGTAGTTATTTTCTTGCTTAGTATAAACATGTGTTTTTGGACGATTTTGAAAGATACAATTGAGTTTCAGTTACAGTGCTTTCCATTTATTCATTAGCCAATCAAAGTCTTTATACATCACCAAGGATTGAGACACATTTAGACTGCTAAAGGTG
CDS Sequence
- >AT3G22300.1
ATGATCGCCGGAGTATTGCGCCGATCTTCACTCCCGTCGAGGCAGACTCTCTCCGCCGCGTTAGCCTCCTTCAATTCGTGTATTTCGCACAATCTCACTCCAGCCACCACCGGAGCTTCCGTCAGCTCTCGATTCACTCTCGCGTCGTCTCCTAACTCGTTTGGCATCAGAGCGAGGAACATCCACATTAGATCTGAGCCGTCGATGATTGTTCCCGCAGGAATCGCGTCACAAGGTTACGCCACTGTCACAAAGGATCGCAAAAACGAGATTAAGAAAGCTAAGATTAAAATTTCTCCAGACAATGTCAGACCATTGAGTAGGAAGGAGATCGCTCTCCAGAAAGAGGCAGCAGAAGAAAGCACATCAAAGATAAAAGGAACAAAGATTTGTATAGCGATTCGGTCTTTTGTTAACCCGGAAAAGCAAGCTTGGTGTCTTCCTCCTCACACTCGTAAAGTCGCAATGCCCGATACACGAACTCTGTACACGGTGCTAAGATCGCCTCACGTCGATAAGAAGTCTAGAGAACAGTTTGAGATGAGGTTCAAGAAACGGTTTCTTGTCATCAAAGCTCAGAGTCATGAGTTGAGCAAGAAGCTGTTTTGGTTAAAACGTTATCGTATTCTTGGAGCTCAATATGAACTCCAGTTCCATTGCAAGACCCGTTTGGATATGACTCAAGTGTTAGGCAACATCAATGGCTCCACCACCAATGCTTACTGA
Protein Sequence
- >AT3G22300.1
MIAGVLRRSSLPSRQTLSAALASFNSCISHNLTPATTGASVSSRFTLASSPNSFGIRARNIHIRSEPSMIVPAGIASQGYATVTKDRKNEIKKAKIKISPDNVRPLSRKEIALQKEAAEESTSKIKGTKICIAIRSFVNPEKQAWCLPPHTRKVAMPDTRTLYTVLRSPHVDKKSREQFEMRFKKRFLVIKAQSHELSKKLFWLKRYRILGAQYELQFHCKTRLDMTQVLGNINGSTTNAY