Gene Details:
- Gene ID: AT3G21850
- Gene Symbol: ASK9, SK9
- Gene Name: SKP1-like 9, SKP1-like 9
- Description: SKP1-like 9;(source:Araport11)
- TAIR Accession: locus:2093084
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000033 — fruit valve — valva de fruto (Spanish, exact), 果実の弁 (Japanese, exact)
- PO:0000223 — shoot axis cortex — cortex del eje del epiblasto (epiblastema) del tallo (Spanish, exact), portion of shoot axis cortex tissue (exact), シュート軸皮層 (Japanese, exact), branch cortex (narrow)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0009088 — seed coat — cubierta de la semilla (Spanish, exact), portion of seed coat tissue (exact), 種子種皮 (Japanese, exact)
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000014 — rosette leaf — hoja en roseta (Spanish, exact), ロゼット葉 (Japanese, exact)
- PO:0009001 — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0020121 — lateral root — raíz lateral (Spanish, exact), 側根 (Japanese, exact)
- PO:0020127 — primary root — raíz primaria (Spanish, exact), tap root (exact), 一次根 (Japanese, exact)
- PO:0020144 — apical meristem — AM (exact), meristema apical (Spanish, exact), 頂端分裂組織 (Japanese, exact), primary meristem (related), promeristem (broad)
- PO:0020148 — shoot apical meristem — SAM (exact), meristema apical del epiblasto (epiblastema) (Spanish, exact), 茎頂分裂組織 (Japanese, exact), primary shoot meristem (related), promeristem (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Gene Ontology:
- GO:0031146 — involved in — SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
- GO:0097602 — enables — cullin family protein binding
- GO:0007346 — acts upstream of or within — regulation of mitotic cell cycle
- GO:0005634 — located in — nucleus
- GO:0005737 — is active in — cytoplasm
- GO:0005634 — is active in — nucleus
- GO:0005515 — enables — protein binding
Function-related keywords:
- fruit valve , shoot axis cortex , vascular leaf , inflorescence flower pedicel , seed coat , cauline leaf , rosette leaf , fruit , vascular leaf , flower , stem , lateral root , primary root , apical meristem , shoot apical meristem , pollen , pollen
Literature:
- The Arabidopsis SKP1-LIKE1 gene is essential for male meiosis and may control homologue separation. DOI: 10.1073/pnas.96.20.11416 ; PMID: 10500191
- SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase. DOI: 10.1093/emboj/20.11.2742 ; PMID: 11387208
- Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. DOI: 10.1046/j.1365-313x.2003.01768.x ; PMID: 12795696
- The Arabidopsis SKP1-like genes present a spectrum of expression profiles. DOI: 10.1023/a:1025056008926 ; PMID: 13677462
- Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. DOI: 10.1104/pp.103.024703 ; PMID: 12970487
- Expression and interaction analysis of Arabidopsis Skp1-related genes. DOI: 10.1093/pcp/pch009 ; PMID: 14749489
- Molecular evolution and selection patterns of plant F-box proteins with C-terminal kelch repeats. DOI: 10.1104/pp.110.166579 ; PMID: 21119043
- A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. DOI: 10.1371/journal.pone.0050009 ; PMID: 23166809
- The SKP1-like gene family of Arabidopsis exhibits a high degree of differential gene expression and gene product interaction during development. DOI: 10.1371/journal.pone.0050984 ; PMID: 23226441
Sequences:
cDNA Sequence
- >AT3G21850.1
TATTACTCAATCATTTACTCAATTCTTCAATCTTCCAGAGAAAAAATCTCCCCCACTGAAAAAATAATGTCGACGAAGAAGATCATATTGAAGAGCTCCGATGGTCACTCATTCGAGGTCGAAGAAGAGGCCGCACGCCAATGCCAGATTATCATAGCTCATATGAGTGAAAATGATTGTACCGATAATGGAATCCCTCTTCCAAACGTGACAGGCAAGATTCTTGCGATGGTGATCGAGTACTGCAACAAGCACCACGTCGATGCCGCTAATCCTTGCTCCGACGATGATCTCAAGAAGTGGGACAAGGAGTTCATGGAAAAAGATACATCCACGATCTTTGATCTCATCAAGGCTGCGAATTACCTAAACATCAAAAGCCTTTTTGATCTAGCATGCCAAACCGTCGCGGAAATCATCAAAGGCAACACTCCTGAGCAGATTCGCGAATTCTTCAACATTGAGAATGATTTAACACCTGAGGAAGAAGCAGCGATTCGTAGGGAGAATAAATGGGCTTTTGAATGAGCGGATTATCAAAACCTAAACAGCTTTCTTTCTTTTCTTTTCTTTCTTATTTAGTG
CDS Sequence
- >AT3G21850.1
ATGTCGACGAAGAAGATCATATTGAAGAGCTCCGATGGTCACTCATTCGAGGTCGAAGAAGAGGCCGCACGCCAATGCCAGATTATCATAGCTCATATGAGTGAAAATGATTGTACCGATAATGGAATCCCTCTTCCAAACGTGACAGGCAAGATTCTTGCGATGGTGATCGAGTACTGCAACAAGCACCACGTCGATGCCGCTAATCCTTGCTCCGACGATGATCTCAAGAAGTGGGACAAGGAGTTCATGGAAAAAGATACATCCACGATCTTTGATCTCATCAAGGCTGCGAATTACCTAAACATCAAAAGCCTTTTTGATCTAGCATGCCAAACCGTCGCGGAAATCATCAAAGGCAACACTCCTGAGCAGATTCGCGAATTCTTCAACATTGAGAATGATTTAACACCTGAGGAAGAAGCAGCGATTCGTAGGGAGAATAAATGGGCTTTTGAATGA
Protein Sequence
- >AT3G21850.1
MSTKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKHHVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE