Gene Details:
- Gene ID: AT3G21820
- Gene Symbol: ATXR2, SDG36
- Gene Name: histone-lysine N-methyltransferase ATXR2, SET DOMAIN PROTEIN 36
- Description: histone-lysine N-methyltransferase ATXR2;(source:Araport11)
- TAIR Accession: locus:2093059
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0040029 — acts upstream of or within positive effect — epigenetic regulation of gene expression
- GO:0046975 — enables — histone H3K36 methyltransferase activity
- GO:0062211 — acts upstream of or within positive effect — root regeneration
- GO:0005634 — located in — nucleus
- GO:0010311 — acts upstream of or within positive effect — lateral root formation
- GO:0005515 — enables — protein binding
- GO:1990110 — acts upstream of or within — callus formation
- GO:0005634 — is active in — nucleus
Literature:
- Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. DOI: 10.1104/pp.102.013722 ; PMID: 12805620
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation. DOI: 10.1126/scisignal.aan0316 ; PMID: 29184030
- JMJ30-mediated demethylation of H3K9me3 drives tissue identity changes to promote callus formation in Arabidopsis. DOI: 10.1111/tpj.14002 ; PMID: 29923261
- Arabidopsis ATXR2 represses de novo shoot organogenesis in the transition from callus to shoot formation. DOI: 10.1016/j.celrep.2021.109980 ; PMID: 34758306
Sequences:
cDNA Sequence
- >AT3G21820.1
GGATCCGGCTCGGGTCATCCATCTCAACTCCAAAGAGTCTATCTGGTCCTTCCGGACCCAAACAGTCAAAATAGCACCAAATTAAAAACACAGACGCGCCGCCGTACGAGAAAATCTCCGGCTATGGATTCCGTTTACAAAACCGACGAAAACTTCGCCGCGGATGTCGCCGCTCTTCTTGCTCCGCTTCCAACTCCCCAACTTCAGGAGTATTTCAACAAGCTTATAACTAGTAGAAGATGCAATGGAATTGAAGTGAAAAACAATGGAACCATTGGAAAAGGTGTTTATGCAAATTCAGAGTTTGACGAAGATGAACTCATTTTGAAAGATGAGATTCTTGTTGGTATCCAACATTCTTCCAACAAGGTGGATTGTTTAGTTTGCAGTTTTTGTTTCCGGTTCATTGGATCAATCGAGAAACAAATCGGCAGGAAACTCTATTTCAAGAATCTCGGTGTCTCTGGTTGTTGTGACGACGATTCATCCGAAGAAGATGAATGTGTGAAGTACAATGGAAATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCAGAAGGAGTTGTTAGTTCTTTGATGAATGGTGAAATGGCATTGCCGCATACTGATAAGTTTCCTTTGCCGTCGCCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGCAGTGAATCATGCGCAGCGGCAGATTGGGAGAGTTCTCATTCCTTACTTTGTACTGGTGAGAGGTCTGAATCAATATCTAGAGAGGCGCTTGGAGAGTTTATTAAACATGCTAATGATACCAATGATATTTTTCTCCTGGCTGCGAAGGCAATCGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGTGGACAAAAAAGCGAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGAAGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACGTCTTTGGAGCTCCTGAAGATAGCCATATTTGACAAAGAATGTGAAGCCCTGTTCTCCCTCGAAATCTATGGGAATATCATCGGCATGTTTGAGCTGAATAACCTAGACTTGGTGGTAGCATCACCAGTAGAGGACTATTTCTTGTATATTGATGATCTTCCTGATGCAGAAAAGGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGACTGTTGCCAAGGAACGGCCTTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCCTAATGCAAAAGCCTTCAAAAGAGAAGAGGACAGAGACGGACAAGCAGTGATAATTGCATTAAGACGCATCAGCAAGAACGAAGAGGTGACGATTTCATATATCGACGAGGAGCTTCCATACAAAGAGAGACAAGCATTACTTGCAGACTATGGTTTCAGCTGCAAGTGCTCTAAGTGTCTTGAAGATTCTTCATCAATTTGAAGCATAATTTTTGTTTTCAAAAGAACAGAAATTTTCAATTTTGCCTATATAGTGATTACACTGGAAATCACTACTGAAATAAAGAGTATGGCGTTAGTTTCTCTACGCAACATTGAAACAATAAAAGGACATCTTCGTTTGAAGATCAAGCTTTAGTTCTTTTTCAATATATATCTAAAGATGATGAACAAAGCA
CDS Sequence
- >AT3G21820.1
ATGGATTCCGTTTACAAAACCGACGAAAACTTCGCCGCGGATGTCGCCGCTCTTCTTGCTCCGCTTCCAACTCCCCAACTTCAGGAGTATTTCAACAAGCTTATAACTAGTAGAAGATGCAATGGAATTGAAGTGAAAAACAATGGAACCATTGGAAAAGGTGTTTATGCAAATTCAGAGTTTGACGAAGATGAACTCATTTTGAAAGATGAGATTCTTGTTGGTATCCAACATTCTTCCAACAAGGTGGATTGTTTAGTTTGCAGTTTTTGTTTCCGGTTCATTGGATCAATCGAGAAACAAATCGGCAGGAAACTCTATTTCAAGAATCTCGGTGTCTCTGGTTGTTGTGACGACGATTCATCCGAAGAAGATGAATGTGTGAAGTACAATGGAAATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCAGAAGGAGTTGTTAGTTCTTTGATGAATGGTGAAATGGCATTGCCGCATACTGATAAGTTTCCTTTGCCGTCGCCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGCAGTGAATCATGCGCAGCGGCAGATTGGGAGAGTTCTCATTCCTTACTTTGTACTGGTGAGAGGTCTGAATCAATATCTAGAGAGGCGCTTGGAGAGTTTATTAAACATGCTAATGATACCAATGATATTTTTCTCCTGGCTGCGAAGGCAATCGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGTGGACAAAAAAGCGAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGAAGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACGTCTTTGGAGCTCCTGAAGATAGCCATATTTGACAAAGAATGTGAAGCCCTGTTCTCCCTCGAAATCTATGGGAATATCATCGGCATGTTTGAGCTGAATAACCTAGACTTGGTGGTAGCATCACCAGTAGAGGACTATTTCTTGTATATTGATGATCTTCCTGATGCAGAAAAGGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGACTGTTGCCAAGGAACGGCCTTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCCTAATGCAAAAGCCTTCAAAAGAGAAGAGGACAGAGACGGACAAGCAGTGATAATTGCATTAAGACGCATCAGCAAGAACGAAGAGGTGACGATTTCATATATCGACGAGGAGCTTCCATACAAAGAGAGACAAGCATTACTTGCAGACTATGGTTTCAGCTGCAAGTGCTCTAAGTGTCTTGAAGATTCTTCATCAATTTGA
Protein Sequence
- >AT3G21820.1
MDSVYKTDENFAADVAALLAPLPTPQLQEYFNKLITSRRCNGIEVKNNGTIGKGVYANSEFDEDELILKDEILVGIQHSSNKVDCLVCSFCFRFIGSIEKQIGRKLYFKNLGVSGCCDDDSSEEDECVKYNGNEEQCGGSSSSHNTLPEGVVSSLMNGEMALPHTDKFPLPSPLSCPGGCQEAFYCSESCAAADWESSHSLLCTGERSESISREALGEFIKHANDTNDIFLLAAKAIAFTILRYRKLKAEHVDKKAKQSEPKQSLLLEAWKPVSIGYKRRWWDCIALPDDVDPTDEGAFRMQIKNLACTSLELLKIAIFDKECEALFSLEIYGNIIGMFELNNLDLVVASPVEDYFLYIDDLPDAEKEETEEITRPFLDALGDEYSDCCQGTAFFPLQSCMNHSCCPNAKAFKREEDRDGQAVIIALRRISKNEEVTISYIDEELPYKERQALLADYGFSCKCSKCLEDSSSI