Information report for AT3G21300
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Functional Keywords
Literature and News
- Arabidopsis SAMT1 defines a plastid transporter regulating plastid biogenesis and plant development. DOI: 10.1105/tpc.105.040741 ; PMID: 17098813
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis. DOI: 10.1371/journal.pgen.1006027 ; PMID: 27138552
- Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. DOI: 10.1186/s12870-017-1206-0 ; PMID: 29268705
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Pyrimidine catabolism is required to prevent the accumulation of 5-methyluridine in RNA. DOI: 10.1093/nar/gkad529 ; PMID: 37334828
Gene Resources
- UniProt: Q9LU28
- EMBL: AB023045, CP002686
- AlphaFoldDB: Q9LU28
- EnsemblPlants: AT3G21300.1
- Gramene: AT3G21300.1
- KEGG: ath:AT3G21300
- Orthologous matrix: GGCKWQH
- ExpressionAtlas: AT3G21300
- InterPro: IPR002792, IPR010280, IPR012340
- PANTHER: PTHR11061, PTHR11061:SF30
- SUPFAM: SSF50249, SSF53335
- PROSITE: PS01231, PS50926, PS51687
- Gene3D: 2.40.50.1070, 2.40.50.140, 3.40.50.150
- SWISS-MODEL: Q9LU28
- Conserved Domain Database: cd02440
Homologs
- Brachypodium distachyon Bradi5g02300.2.p
- Brassica napus GSBRNA2T00118752001, GSBRNA2T00089987001
- Brassica oleracea XP_013635862.1
- Brassica rapa XP_009103688.1
- Glycine max Glyma.11G147200.2.p, Glyma.11G147200.1.p
- Nicotiana tabacum XP_016454660.1
- Panicum virgatum Pavir.7KG106700.1.p, Pavir.7KG106700.2.p
- Petunia inflata Peinf101Scf09533g00004.1
- Raphanus raphanistrum RrC523_p5
- Ricinus communis 28076.m000420
- Setaria italica Seita.7G006100.1.p
- Setaria viridis Sevir.7G032500.1.p
- Zea mays GRMZM2G147623_P02, GRMZM2G147623_P01
Sequences
cDNA Sequence
- >AT3G21300.1
TACAAGACGAAGAAGATAGGTCGACGCAAACACGATGTCGTTTTGAAATCTATTCACACTGTTCTCTCTTATCAACAGATTCAGAAATTAGCACCCGACTCGGGCTCCGTTTCAATGTTGGCCGCGACGCCTGCTCATGGACTCAGGTACGTGGTGGTGCCCACACGCTCATGGCTTCATAGGTTTCGATGCTGCTCGTCTTCTCTCGCTCCTCTCTCCCCTTCTGAATTCTCGGGCGGTAATAAAGCCCAGAAGAAGCTCAACGACGAGAACAACACCAACGTAAGCAATGAGAAAACGGCGCCGTATTATCCGAAACGAGGAGAAACAGTGGAGCTTGTGTGCGAGAGTTTAGGATTCAAAGGCAAAGGAATCTGTAAAGTTGATGGAACTGGCTACGTCGTTATGTGTGACCGAGCTCTTCCCGGCGAACGTTTTCTTGGCCGTGTCACTCGCCGCAAAGGCAGCTATGCTGAAGTGACAAAAATGAAGACAATATCTCCACATAAGGACTTAGTAGAAGCTCCATGTGAGTATGCATCTTACTGTGGTGGTTGCAAAACTCAGAATCTCTCTTATGAAGCTCAGCTTAGAGCTAAAGAAGAGCAAGTTCATGAGCTTATCAGACATGTTGGAAGGTTTTCTGATAACAATCCTGGCCTTGAGATTGTCTTGAAGCCTATTGTTGCTTGCGATATTCAATTCCATTATCGGAATAAGATGGAGTTTTCATTTGGTCCACAAAGATGGCTTCCGATTGAAATGTTAAACGAGAGACAAGATGGTCCTAAGAACTTTGCATTGGGGCTCCATGCACCTGGATTTTTTGATAAGGTTTTAAATGTTGATAAGTGCTTATTACAGAGCGAGCCAGGAAACTTGGTTCTTGCTGCTGTCCAAGATTGCTGGAGAGATCCTGAATTAAGTCTTTCACCATATGATTGTCGTTCACATGTTGGGTTTCTTAAACATTTGATGCTGAGAACTGGAAGGAATGTGGAGACTGGTTCACTAGAACTTATGGTCAATTTTGTGACATCGTCTTATAAGCCAGAGCTGTTGAAACCCCTGGTTGATAGGATTTCATCAATTCCTCAAGTGGTAAGCATTATGAATAATGTAAATTCTTCGGTAGGAAACACATCCGTTGGCGAAAAGGAATATACTCTTTATGGGAAGGATACAATCACAGAGGTCTTAAGAGGGCTTACATTTCAAATTTCAGCCAACTCTTTCTTTCAGACTAACACTCATCAGGCTGAAGTTTTATATAAGCTTATTGAGGAATCTGCTGGACTTAAAGGAGATGGCTCAGAAGTCGTGCTCGATCTTTTCTGTGGAACTGGTACCATAGGCCTTACACTTGCCAGAAGGGCGAAACACGTGTATGGTTATGAAGTAGTACCACAAGCAATAACAGATGCACACAAGAATGCCCAAATAAACGGCATAGAGAATGCAACATTCATCCAAGGGGATCTAAACAAAATAGGAGAAGATTTTGGGAACAATTTCCCTAAGCCTGATATCGTTATTTCTGATCCCAATCGACCTGGTATGCACATGAAGTTGATCAAGTTTCTGCTAAAGCTTAAATCTCCACGGATCATTTATGTTTCCTGTAATCCTGCAACCTGCGCCAGGGATCTCGATTACCTCTGTCACGGCGTGGAGGAGAAGAATCTAAAAGGTTGCTACAAACTGATGAGTGTTCAGCCAGTGGATATGTTCCCTCACACTCCTCACATCGAATGTGTCTGCTTGTTAGAGCTTGCTTGAGCTCTATTGTCACCATGGCTGCTTCATTTGGTCTCTAATCAGATGAGAGACAAATGAAAACAGAGATTTTTTTAGATTGAGGGAGTTTTGGTTTTCCATTAGAGTTAAGTATCTGTAATCTTTTTCATCGAGTTCTTTAATAGCATTCATAGACAAGAATGTAAACGTTTTTTAAAAAGTTAAAATCCCACCAAGGCAAGTGGTCTTTAAGAGTTAAGATCCTGATAAGAGAATTTTATTAAAAACAATCACTAAATGGATCTGCTTGTACAAGTTTCATGACTTCTCAACATCTTTTGAAATAAGACAATTTCACTATGAATGATTAAACGAATGTGGACCTAAATCAATGTAAAATGAGTGCATATCAATCTTCCCATAAGCTTTCTTCATCTATGTCTTAATCTTGTTTTCTCGAGCTAAGTTGACGAGCATAAGCCGCGACACGCTTTGCCCACTTAACGATCTCTGCCTTGAGTATTTTGGAATCCATACGGTTCAACGATGATGGTTTCTTCTTCTCTCCCGTTGATGACTCCAAGAACGAGAATGACAAGCATCGATTATAATGACTCGACTTGGGGCTTCCATTGTTCTTGCTCTCCAAAGCCCGTTTCTTTACAGACATGTCAAAAAGATCTCCCAAGTTTTGTAAAGTATGAGTTAGAAAGAGACTTTTAATAGAGACAGACGCAGACAAAAGAAAGCGAGTCTTACAAGTTATTAGACTTCATGTTAGTTAGGGTAAAAGACGTGCAACCTAAGCATGTTGGTTTCGTTGACGTTTGACTTTGTCAACGCATATTCTTCTCTTCTCTTTTCTTCGTAAATGGTATCTTTGTTTTCATTCTCTTTTCAATTAAAACTTGTGTCATTTGACTTTTCTTTGATCTGTACCATTTGGACCGAGTTTGG
CDS Sequence
- >AT3G21300.1
ATGTTGGCCGCGACGCCTGCTCATGGACTCAGGTACGTGGTGGTGCCCACACGCTCATGGCTTCATAGGTTTCGATGCTGCTCGTCTTCTCTCGCTCCTCTCTCCCCTTCTGAATTCTCGGGCGGTAATAAAGCCCAGAAGAAGCTCAACGACGAGAACAACACCAACGTAAGCAATGAGAAAACGGCGCCGTATTATCCGAAACGAGGAGAAACAGTGGAGCTTGTGTGCGAGAGTTTAGGATTCAAAGGCAAAGGAATCTGTAAAGTTGATGGAACTGGCTACGTCGTTATGTGTGACCGAGCTCTTCCCGGCGAACGTTTTCTTGGCCGTGTCACTCGCCGCAAAGGCAGCTATGCTGAAGTGACAAAAATGAAGACAATATCTCCACATAAGGACTTAGTAGAAGCTCCATGTGAGTATGCATCTTACTGTGGTGGTTGCAAAACTCAGAATCTCTCTTATGAAGCTCAGCTTAGAGCTAAAGAAGAGCAAGTTCATGAGCTTATCAGACATGTTGGAAGGTTTTCTGATAACAATCCTGGCCTTGAGATTGTCTTGAAGCCTATTGTTGCTTGCGATATTCAATTCCATTATCGGAATAAGATGGAGTTTTCATTTGGTCCACAAAGATGGCTTCCGATTGAAATGTTAAACGAGAGACAAGATGGTCCTAAGAACTTTGCATTGGGGCTCCATGCACCTGGATTTTTTGATAAGGTTTTAAATGTTGATAAGTGCTTATTACAGAGCGAGCCAGGAAACTTGGTTCTTGCTGCTGTCCAAGATTGCTGGAGAGATCCTGAATTAAGTCTTTCACCATATGATTGTCGTTCACATGTTGGGTTTCTTAAACATTTGATGCTGAGAACTGGAAGGAATGTGGAGACTGGTTCACTAGAACTTATGGTCAATTTTGTGACATCGTCTTATAAGCCAGAGCTGTTGAAACCCCTGGTTGATAGGATTTCATCAATTCCTCAAGTGGTAAGCATTATGAATAATGTAAATTCTTCGGTAGGAAACACATCCGTTGGCGAAAAGGAATATACTCTTTATGGGAAGGATACAATCACAGAGGTCTTAAGAGGGCTTACATTTCAAATTTCAGCCAACTCTTTCTTTCAGACTAACACTCATCAGGCTGAAGTTTTATATAAGCTTATTGAGGAATCTGCTGGACTTAAAGGAGATGGCTCAGAAGTCGTGCTCGATCTTTTCTGTGGAACTGGTACCATAGGCCTTACACTTGCCAGAAGGGCGAAACACGTGTATGGTTATGAAGTAGTACCACAAGCAATAACAGATGCACACAAGAATGCCCAAATAAACGGCATAGAGAATGCAACATTCATCCAAGGGGATCTAAACAAAATAGGAGAAGATTTTGGGAACAATTTCCCTAAGCCTGATATCGTTATTTCTGATCCCAATCGACCTGGTATGCACATGAAGTTGATCAAGTTTCTGCTAAAGCTTAAATCTCCACGGATCATTTATGTTTCCTGTAATCCTGCAACCTGCGCCAGGGATCTCGATTACCTCTGTCACGGCGTGGAGGAGAAGAATCTAAAAGGTTGCTACAAACTGATGAGTGTTCAGCCAGTGGATATGTTCCCTCACACTCCTCACATCGAATGTGTCTGCTTGTTAGAGCTTGCTTGA
Protein Sequence
- >AT3G21300.1
MLAATPAHGLRYVVVPTRSWLHRFRCCSSSLAPLSPSEFSGGNKAQKKLNDENNTNVSNEKTAPYYPKRGETVELVCESLGFKGKGICKVDGTGYVVMCDRALPGERFLGRVTRRKGSYAEVTKMKTISPHKDLVEAPCEYASYCGGCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFHYRNKMEFSFGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAVQDCWRDPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVDRISSIPQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLLELA