Information report for AT3G21280
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- CS860088 — No visible phenotype.
Functional Keywords
Literature and News
- The ubiquitin-specific protease family from Arabidopsis. AtUBP1 and 2 are required for the resistance to the amino acid analog canavanine. DOI: 10.1104/pp.124.4.1828 ; PMID: 11115897
- Genetic interactions of a putative Arabidopsis thaliana ubiquitin-ligase with components of the Saccharomyces cerevisiae ubiquitination machinery. DOI: 10.1007/s00294-006-0093-y ; PMID: 16897085
- ATR and ATM play both distinct and additive roles in response to ionizing radiation. DOI: 10.1111/j.1365-313X.2006.02931.x ; PMID: 17227549
- Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development. DOI: 10.1111/j.1365-313X.2008.03557.x ; PMID: 18485060
- UBIQUITIN-SPECIFIC PROTEASES function in plant development and stress responses. DOI: 10.1007/s11103-017-0633-5 ; PMID: 28695315
- Detection of Genes in Arabidopsis thaliana L. Responding to DNA Damage from Radiation and Other Stressors in Spaceflight. DOI: 10.3390/genes12060938 ; PMID: 34205326
Gene Resources
- UniProt: A0A178VLU8
- EMBL: CACRSJ010000106, LUHQ01000003
- AlphaFoldDB: A0A178VLU8
- EnsemblPlants: AT3G21280.1
- Gramene: AT3G21280.1
- KEGG: ath:AT3G21280
- ExpressionAtlas: AT3G21280
- InterPro: IPR000626, IPR001394, IPR018200
- PANTHER: PTHR43982, PTHR43982:SF1
- SUPFAM: SSF54001, SSF54236
- PROSITE: PS00299, PS00972, PS00973
- Gene3D: 3.10.20.90, 3.90.70.10
- Conserved Domain Database: cd02657, cd16104
Homologs
- Brassica oleracea Bol019508, Bo8g077900
- Citrullus lanatus Cla97C08G156060
- Gossypium hirsutum Gohir.A13G181900
- Oryza sativa OsUBP6
- Zea mays GRMZM2G376074
Sequences
cDNA Sequence
- >AT3G21280.1
TTTTTTTTTCCTTTAATTTTAGATTTATTTTTATGTCAGCAAAACGCTGCCGTATTGGGTTTTAGGTCTGTTGTCTTTCTGAAGCAAGATGGTGATCAAACCCGACCCGAATCAACCCGGATCGACCCACCCGGTTCGGATACTGGCATATATAGAGACGAAGAAAGAAGAAGAAGGCAAGTTTTTTTTTTTTGATATAGCTTGCCTTGGCTTCAAGAAAGAAATCAATCTCGTTTCTCTTCAGCATCAAACAATGTTAACAGTGAGCGTGAAGTGGCAAAAGAAGGTGTTTGAGAGTATCGAGATTGATACTAGCCAGCCTCCTTTTGTTTTCAAGGCTCAGTTGTATGATTTGAGTGGAGTTCCGCCTGAGCGGCAAAAGATCATGGTCAAAGGTGGCCTTTTGAAGGATGATGCAGATTGGTCTACGTTGGGACTGAAAAATGGTCAAAAATTGATGATGATGGGAACTGCAGATGAAATAGTGAAGGCTCCAGAGAAGGGTCCTGTTTTTATGGAGGATCTTCCTGAAGAACAGCAGGCTGCTAATCTGGGCTACAGTGCTGGCCTAGTCAATCTTGGAAACACCTGTTACATGAACTCAACGATGCAGTGTTTAATATCTGTCCCAGAGTTGAAATCTGAATTATCCAATTACCAATCTGCTCGAACCAAGGATGTGGATCAGACTTCTCACATGCTCACTGTTGCAACACGTGAGTTATTTAGTGAGCTTGATAAAAGTGTCAAGGCTGTTGCGCCTATGCCGTTCTGGATGGTGTTACAAAAAAAATATCCTCAGTTTGCTCAGTTGCATAACGGAAATCACATGCAACAGGATGCTGAAGAATGTTGGACACAAATGTTGTACACTCTTTCCCAGTCCCTAAAACTGCCATCGCCTAGTGAAGATCCTGATGCTGTGAAGGCTCTTTTTGGTCTCAACCTTCTAAACAGGTTGCATTGCCAAGAAAGTAGCGAAGAAAGCTCAGAGACAGAATCTGTCTTTTCTCTGAAATGTCACATATCACATGAGGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGAGAACTTGAAAAAACATCTCCTTCTCTGGGTCGTACAGCGGTTTACGTAAAGGAGTCTCTTATAGATTCATTGCCAAGGTACTTGACTGTTCAGTTTGTGAGATTCTTCTGGAAACGGGAGAGTAATCAGAAAGCAAAAATTCTCCGGAAAGTGGATTATCCGTTGGAGTTGGATATATATGACCTTTGTTCTGAGGATCTTCGAAAGAAACTGGAAGCTCCTCGACAGAAACTGAGAGATATTGAAGGTCAAAAGCTTGGTCTGCAAGCCAGTGCAAAGAGCAGCTCAAAGGGTGATGATGTGAAAATGACTGATGCTGAGGGATCATCAAACCAAAGTGGCGAATCATCAACTGGTGACCAACAGGAAGGTGCTTCGCCTCACATGACCGGAATTTATGACCTGGTATCGGTGTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTATGTTGCATGGGTCAAGCAAGAGAGTGGTAAGTGGGTTCAATACGACGATGCCAACACTAGTCTTCAACGGGGAGAAGATATCATTAAACTCTCTGGAGGAGGTGATTGGCATATGGCATACATCGTAATGTACAAGGCCCGTCTCATCTCCATGTAATCGAATCTCTCCTTTTTTATTTTCTCAGTTCTTGAAACATTTAGATCGTTTAATCTTTTCTCAGTTCTTCATGCTCCTCTTTATAGAATTTCCATATTATTTTTTGTTGTTGTCATTAAAATGTTATAAATCAGAAAACTATAAAGAAAAAAGTGTGTTTTTGTAGAGGTCCCAATCTGGATATCGTGAATCCACCAATAGATATGTTATAAGTTTATCAAAGAGATCATAAGAAA - >AT3G21280.2
TTTTTTTTTCCTTTAATTTTAGATTTATTTTTATGTCAGCAAAACGCTGCCGTATTGGGTTTTAGGTCTGTTGTCTTTCTGAAGCAAGATGGTGATCAAACCCGACCCGAATCAACCCGGATCGACCCACCCGGTTCGGATACTGGCATATATAGAGACGAAGAAAGAAGAAGAAGGCAAGTTTTTTTTTTTTGATATAGCTTGCCTTGGCTTCAAGAAAGAAATCAATCTCGTTTCTCTTCAGCATCAAACAATGTTAACAGTGAGCGTGAAGTGGCAAAAGAAGGTGTTTGAGAGTATCGAGATTGATACTAGCCAGCCTCCTTTTGTTTTCAAGGCTCAGTTGTATGATTTGAGTGGAGTTCCGCCTGAGCGGCAAAAGATCATGGTCAAAGGTGGCCTTTTGAAGGATGATGCAGATTGGTCTACGTTGGGACTGAAAAATGGTCAAAAATTGATGATGATGGGAACTGCAGATGAAATAGTGAAGGCTCCAGAGAAGGGTCCTGTTTTTATGGAGGATCTTCCTGAAGAACAGCAGGCTGCTAATCTGGGCTACAGTGCTGGCCTAGTCAATCTTGGAAACACCTGTTACATGAACTCAACGATGCAGTGTTTAATATCTGTCCCAGAGTTGAAATCTGAATTATCCAATTACCAATCTGCTCGAACCAAGGATGTGGATCAGACTTCTCACATGCTCACTGTTGCAACACGTGAGTTATTTAGTGAGCTTGATAAAAGTGTCAAGGCTGTTGCGCCTATGCCGTTCTGGATGGTGTTACAAAAAAAATATCCTCAGTTTGCTCAGTTGCATAACGGAAATCACATGCAACAGGATGCTGAAGAATGTTGGACACAAATGTTGTACACTCTTTCCCAGTCCCTAAAACTGCCATCGCCTAGTGAAGATCCTGATGCTGTGAAGGCTCTTTTTGGTCTCAACCTTCTAAACAGGTTGCATTGCCAAGAAAGTAGCGAAGAAAGCTCAGAGACAGAATCTGTCTTTTCTCTGAAATGTCACATATCACATGAGGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGAGAACTTGAAAAAACATCTCCTTCTCTGGGTCGTACAGCGGTTTACGTAAAGGAGTCTCTTATAGATTCATTGCCAAGGTACTTGACTGTTCAGTTTGTGAGATTCTTCTGGAAACGGGAGAGTAATCAGAAAGCAAAAATTCTCCGGAAAGTGGATTATCCGTTGGAGTTGGATATATATGACCTTTGTTCTGAGGATCTTCGAAAGAAACTGGAAGCTCCTCGACAGAAACTGAGAGATATTGAAGGTCAAAAGCTTGGTCTGCAAGCCAGTGCAAAGAGCAGCTCAAAGGGTGATGATGTGAAAATGACTGATGCTGAGGGATCATCAAACCAAAGTGGCGAATCATCAACTGGTGACCAACAGGAAGGTGCTTCGCCTCACATGACCGGAATTTATGACCTGGTATCGGTGTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTATGTTGCATGGGTCAAGCAAGAGAGTGGTAAGTGGGTTCAATACGACGATGCCAACACTAGTCTTCAACGGGGAGAAGATATCATTAAACTCTCTGGAGGAGGTGATTGGCATATGGCATACATCGTAATGTACAAGGCCCGTCTCATCTCCATGTAATCGAATCTCTCCTTTTTTATTTTCTCAGTTCTTGAAACATTTAGATCGTTTAATCTTTTCTCAGTTCTTCATGCTCCTCTTTATAGAATTTCCATATTATTTTTTGTTGTTGTCATTAAAATGTTATAAATCAGAAAACTATAAAGAAAAAAGTGTGTTTTTGTAGAGGTCCCAATCTGGATATCGTGAATCCACCAATAGATATGTTATAAGTTTATCAAAGAGATCATAAGAAA
CDS Sequence
- >AT3G21280.1
ATGGTGATCAAACCCGACCCGAATCAACCCGGATCGACCCACCCGGTTCGGATACTGGCATATATAGAGACGAAGAAAGAAGAAGAAGGCAAGTTTTTTTTTTTTGATATAGCTTGCCTTGGCTTCAAGAAAGAAATCAATCTCGTTTCTCTTCAGCATCAAACAATGTTAACAGTGAGCGTGAAGTGGCAAAAGAAGGTGTTTGAGAGTATCGAGATTGATACTAGCCAGCCTCCTTTTGTTTTCAAGGCTCAGTTGTATGATTTGAGTGGAGTTCCGCCTGAGCGGCAAAAGATCATGGTCAAAGGTGGCCTTTTGAAGGATGATGCAGATTGGTCTACGTTGGGACTGAAAAATGGTCAAAAATTGATGATGATGGGAACTGCAGATGAAATAGTGAAGGCTCCAGAGAAGGGTCCTGTTTTTATGGAGGATCTTCCTGAAGAACAGCAGGCTGCTAATCTGGGCTACAGTGCTGGCCTAGTCAATCTTGGAAACACCTGTTACATGAACTCAACGATGCAGTGTTTAATATCTGTCCCAGAGTTGAAATCTGAATTATCCAATTACCAATCTGCTCGAACCAAGGATGTGGATCAGACTTCTCACATGCTCACTGTTGCAACACGTGAGTTATTTAGTGAGCTTGATAAAAGTGTCAAGGCTGTTGCGCCTATGCCGTTCTGGATGGTGTTACAAAAAAAATATCCTCAGTTTGCTCAGTTGCATAACGGAAATCACATGCAACAGGATGCTGAAGAATGTTGGACACAAATGTTGTACACTCTTTCCCAGTCCCTAAAACTGCCATCGCCTAGTGAAGATCCTGATGCTGTGAAGGCTCTTTTTGGTCTCAACCTTCTAAACAGGTTGCATTGCCAAGAAAGTAGCGAAGAAAGCTCAGAGACAGAATCTGTCTTTTCTCTGAAATGTCACATATCACATGAGGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGAGAACTTGAAAAAACATCTCCTTCTCTGGGTCGTACAGCGGTTTACGTAAAGGAGTCTCTTATAGATTCATTGCCAAGGTACTTGACTGTTCAGTTTGTGAGATTCTTCTGGAAACGGGAGAGTAATCAGAAAGCAAAAATTCTCCGGAAAGTGGATTATCCGTTGGAGTTGGATATATATGACCTTTGTTCTGAGGATCTTCGAAAGAAACTGGAAGCTCCTCGACAGAAACTGAGAGATATTGAAGGTCAAAAGCTTGGTCTGCAAGCCAGTGCAAAGAGCAGCTCAAAGGGTGATGATGTGAAAATGACTGATGCTGAGGGATCATCAAACCAAAGTGGCGAATCATCAACTGGTGACCAACAGGAAGGTGCTTCGCCTCACATGACCGGAATTTATGACCTGGTATCGGTGTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTATGTTGCATGGGTCAAGCAAGAGAGTGGTAAGTGGGTTCAATACGACGATGCCAACACTAGTCTTCAACGGGGAGAAGATATCATTAAACTCTCTGGAGGAGGTGATTGGCATATGGCATACATCGTAATGTACAAGGCCCGTCTCATCTCCATGTAA - >AT3G21280.2
ATGGTGATCAAACCCGACCCGAATCAACCCGGATCGACCCACCCGGTTCGGATACTGGCATATATAGAGACGAAGAAAGAAGAAGAAGGCAAGTTTTTTTTTTTTGATATAGCTTGCCTTGGCTTCAAGAAAGAAATCAATCTCGTTTCTCTTCAGCATCAAACAATGTTAACAGTGAGCGTGAAGTGGCAAAAGAAGGTGTTTGAGAGTATCGAGATTGATACTAGCCAGCCTCCTTTTGTTTTCAAGGCTCAGTTGTATGATTTGAGTGGAGTTCCGCCTGAGCGGCAAAAGATCATGGTCAAAGGTGGCCTTTTGAAGGATGATGCAGATTGGTCTACGTTGGGACTGAAAAATGGTCAAAAATTGATGATGATGGGAACTGCAGATGAAATAGTGAAGGCTCCAGAGAAGGGTCCTGTTTTTATGGAGGATCTTCCTGAAGAACAGCAGGCTGCTAATCTGGGCTACAGTGCTGGCCTAGTCAATCTTGGAAACACCTGTTACATGAACTCAACGATGCAGTGTTTAATATCTGTCCCAGAGTTGAAATCTGAATTATCCAATTACCAATCTGCTCGAACCAAGGATGTGGATCAGACTTCTCACATGCTCACTGTTGCAACACGTGAGTTATTTAGTGAGCTTGATAAAAGTGTCAAGGCTGTTGCGCCTATGCCGTTCTGGATGGTGTTACAAAAAAAATATCCTCAGTTTGCTCAGTTGCATAACGGAAATCACATGCAACAGGATGCTGAAGAATGTTGGACACAAATGTTGTACACTCTTTCCCAGTCCCTAAAACTGCCATCGCCTAGTGAAGATCCTGATGCTGTGAAGGCTCTTTTTGGTCTCAACCTTCTAAACAGGTTGCATTGCCAAGAAAGTAGCGAAGAAAGCTCAGAGACAGAATCTGTCTTTTCTCTGAAATGTCACATATCACATGAGGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGAGAACTTGAAAAAACATCTCCTTCTCTGGGTCGTACAGCGGTTTACGTAAAGGAGTCTCTTATAGATTCATTGCCAAGGTACTTGACTGTTCAGTTTGTGAGATTCTTCTGGAAACGGGAGAGTAATCAGAAAGCAAAAATTCTCCGGAAAGTGGATTATCCGTTGGAGTTGGATATATATGACCTTTGTTCTGAGGATCTTCGAAAGAAACTGGAAGCTCCTCGACAGAAACTGAGAGATATTGAAGGTCAAAAGCTTGGTCTGCAAGCCAGTGCAAAGAGCAGCTCAAAGGGTGATGATGTGAAAATGACTGATGCTGAGGGATCATCAAACCAAAGTGGCGAATCATCAACTGGTGACCAACAGGAAGGTGCTTCGCCTCACATGACCGGAATTTATGACCTGGTATCGGTGTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTATGTTGCATGGGTCAAGCAAGAGAGTGGTAAGTGGGTTCAATACGACGATGCCAACACTAGTCTTCAACGGGGAGAAGATATCATTAAACTCTCTGGAGGAGGTGATTGGCATATGGCATACATCGTAATGTACAAGGCCCGTCTCATCTCCATGTAA
Protein Sequence
- >AT3G21280.1
MVIKPDPNQPGSTHPVRILAYIETKKEEEGKFFFFDIACLGFKKEINLVSLQHQTMLTVSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLKDDADWSTLGLKNGQKLMMMGTADEIVKAPEKGPVFMEDLPEEQQAANLGYSAGLVNLGNTCYMNSTMQCLISVPELKSELSNYQSARTKDVDQTSHMLTVATRELFSELDKSVKAVAPMPFWMVLQKKYPQFAQLHNGNHMQQDAEECWTQMLYTLSQSLKLPSPSEDPDAVKALFGLNLLNRLHCQESSEESSETESVFSLKCHISHEVNHLHEGLKHGLKGELEKTSPSLGRTAVYVKESLIDSLPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDIYDLCSEDLRKKLEAPRQKLRDIEGQKLGLQASAKSSSKGDDVKMTDAEGSSNQSGESSTGDQQEGASPHMTGIYDLVSVLTHKGRSADSGHYVAWVKQESGKWVQYDDANTSLQRGEDIIKLSGGGDWHMAYIVMYKARLISM - >AT3G21280.2
MVIKPDPNQPGSTHPVRILAYIETKKEEEGKFFFFDIACLGFKKEINLVSLQHQTMLTVSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLKDDADWSTLGLKNGQKLMMMGTADEIVKAPEKGPVFMEDLPEEQQAANLGYSAGLVNLGNTCYMNSTMQCLISVPELKSELSNYQSARTKDVDQTSHMLTVATRELFSELDKSVKAVAPMPFWMVLQKKYPQFAQLHNGNHMQQDAEECWTQMLYTLSQSLKLPSPSEDPDAVKALFGLNLLNRLHCQESSEESSETESVFSLKCHISHEVNHLHEGLKHGLKGELEKTSPSLGRTAVYVKESLIDSLPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDIYDLCSEDLRKKLEAPRQKLRDIEGQKLGLQASAKSSSKGDDVKMTDAEGSSNQSGESSTGDQQEGASPHMTGIYDLVSVLTHKGRSADSGHYVAWVKQESGKWVQYDDANTSLQRGEDIIKLSGGGDWHMAYIVMYKARLISM