Gene Details:

• Gene ID: AT3G21230
• Gene Symbol: 4CL5
• Gene Name: 4-coumarate:CoA ligase 5
• Description: 4-coumarate:CoA ligase 5;(source:Araport11)
• TAIR Accession:
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G21230.1     AT3G21230.4     AT3G21230.3     AT3G21230.2

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)

Germplasm Phenotype:

• CS65793  — No visible phenotype.
• CS65794  — No visible phenotype.

Function-related keywords:

• root ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen

Literature:

• The substrate specificity-determining amino acid code of 4-coumarate:CoA ligase.   DOI:  10.1073/pnas.1430550100 ;  PMID:  12819348
• Arabidopsis contains a large superfamily of acyl-activating enzymes. Phylogenetic and biochemical analysis reveals a new class of acyl-coenzyme a synthetases.   DOI:  10.1104/pp.103.020552 ;  PMID:  12805634
• An in silico assessment of gene function and organization of the phenylpropanoid pathway metabolic networks in Arabidopsis thaliana and limitations thereof.   DOI:  10.1016/s0031-9422(03)00517-x ;  PMID:  14568076
• Genome-wide characterization of the lignification toolbox in Arabidopsis.   DOI:  10.1104/pp.103.026484 ;  PMID:  14612585
• The 4-coumarate:CoA ligase gene family in Arabidopsis thaliana comprises one rare, sinapate-activating and three commonly occurring isoenzymes.   DOI:  10.1073/pnas.0307307101 ;  PMID:  14769935
• The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis.   DOI:  10.1038/sj.emboj.7600337 ;  PMID:  15282545
• A new type of peroxisomal acyl-coenzyme A synthetase from Arabidopsis thaliana has the catalytic capacity to activate biosynthetic precursors of jasmonic acid.   DOI:  10.1074/jbc.M413578200 ;  PMID:  15677481
• Genome-wide identification of genes expressed in Arabidopsis pistils specifically along the path of pollen tube growth.   DOI:  10.1104/pp.105.060558 ;  PMID:  15894741
• CINNAMYL ALCOHOL DEHYDROGENASE-C and -D are the primary genes involved in lignin biosynthesis in the floral stem of Arabidopsis.   DOI:  10.1105/tpc.105.030767 ;  PMID:  15937231
• Light, the circadian clock, and sugar perception in the control of lignin biosynthesis.   DOI:  10.1093/jxb/eri162 ;  PMID:  15878986
• Characterization in vitro and in vivo of the putative multigene 4-coumarate:CoA ligase network in Arabidopsis: syringyl lignin and sinapate/sinapyl alcohol derivative formation.   DOI:  10.1016/j.phytochem.2005.06.022 ;  PMID:  16099486
• Identification of a peroxisomal acyl-activating enzyme involved in the biosynthesis of jasmonic acid in Arabidopsis.   DOI:  10.1074/jbc.M607854200 ;  PMID:  16963437
• Phytotoxicity and innate immune responses induced by Nep1-like proteins.   DOI:  10.1105/tpc.106.044180 ;  PMID:  17194768
• Suppression by ABA of salicylic acid and lignin accumulation and the expression of multiple genes, in Arabidopsis infected with Pseudomonas syringae pv. tomato.   DOI:  10.1007/s10142-006-0041-4 ;  PMID:  17149585
• Arabidopsis thaliana plants acclimated to low dose rates of ultraviolet B radiation show specific changes in morphology and gene expression in the absence of stress symptoms.   DOI:  10.1111/j.1469-8137.2007.02092.x ;  PMID:  17587374
• Transcription factor AtDOF4;2 affects phenylpropanoid metabolism in Arabidopsis thaliana.   DOI:  10.1111/j.1469-8137.2007.02129.x ;  PMID:  17635218
• Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function.   DOI:  10.1007/s11103-008-9353-1 ;  PMID:  18523729
• De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae.   DOI:  10.1186/1475-2859-11-155 ;  PMID:  23216753
• Transcript and metabolite network perturbations in lignin biosynthetic mutants of Arabidopsis.   DOI:  10.1093/plphys/kiac344 ;  PMID:  35880844
• Three 4-coumarate:coenzyme A ligases in Arabidopsis thaliana represent two evolutionarily divergent classes in angiosperms.   DOI:  10.1046/j.1365-313x.1999.00491.x ;  PMID:  10417722
• The 4-coumarate:CoA ligase gene family in Arabidopsis thaliana comprises one rare, sinapate-activating and three commonly occurring isoenzymes.   DOI:  10.1073/pnas.0307307101 ;  PMID:  14769935

Sequences: