Information report for AT3G20670
Gene Details
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Functional Descriptions
- PO:0000016 — lateral root primordium — portion of lateral root primordium tissue (exact), primordio de raíz lateral (Spanish, exact), 側根原基 (Japanese, exact)
- PO:0000229 — flower meristem — floral meristem (exact), mersitema floral (Spanish, exact), 花芽分裂組織 (Japanese, exact), floral apical meristem (related), Poaceae floret meristem (narrow), ear floret meristem (narrow), floret meristem (narrow), tassel floret meristem (narrow)
- PO:0006020 — lateral root apical meristem — meristema apical de la raíz lateral (Spanish, exact), 側根頂端分裂組織 (Japanese, exact), apical meristem of lateral root (related), lateral root meristem (related)
- PO:0006085 — root meristem — meristema de la raíz (Spanish, exact), 根分裂組織 (Japanese, exact), meristematic zone (related)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. DOI: 10.1105/tpc.106.041400 ; PMID: 16582009
- Constitutive expression exposes functional redundancy between the Arabidopsis histone H2A gene HTA1 and other H2A gene family members. DOI: 10.1105/tpc.105.039719 ; PMID: 16751347
- Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z. DOI: 10.1105/tpc.106.048447 ; PMID: 17220196
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- A unified phylogeny-based nomenclature for histone variants. DOI: 10.1186/1756-8935-5-7 ; PMID: 22650316
Gene Resources
- UniProt: A0A178VAZ1
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A178VAZ1
- EnsemblPlants: AT3G20670.1
- Gramene: AT3G20670.1
- KEGG: ath:AT3G20670
- Orthologous matrix: KANSGRD
- ExpressionAtlas: AT3G20670
- InterPro: IPR002119, IPR007125, IPR009072
- PANTHER: PTHR23430
- SUPFAM: SSF47113
- PROSITE: PS00046
- Gene3D: 1.10.20.10
- OrthoDB: A0A178VAZ1
- SWISS-MODEL: A0A178VAZ1
- Conserved Domain Database: cd00074
Homologs
- Juglans regia Jr11_28990
- Malus domestica MDP0000276921, MDP0000271556
- Manihot esculenta MANES_14G128100
- Nicotiana attenuata A4A49_31668
- Oryza sativa H2AX
- Populus trichocarpa POPTR_018G032000v3
- Raphanus raphanistrum RrC770_p4
- Saccharum spontaneum Sspon.01G0014350-1A
- Salvia miltiorrhiza SMil_00027204-RA_Salv
- Sesamum indicum XP_011082513.1
- Solanum lycopersicum Solyc05g014800.1.1, Solyc05g014830.1.1
- Solanum melongena Sme2.5_02949.1_g00006.1
- Solanum tuberosum PGSC0003DMP400061155
Sequences
cDNA Sequence
- >AT3G20670.1
AAAGAGCGTCCTCTTACGCTTATCTTAATTTCCCTCGCATTGAGAATTTTCAACTTTTTCTATCTCTCTTCCCAAATCACAAATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGTTGCTAAGAAATCAACATCGAGAAGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTCGTTTTCTAAAGAACGGCAAGTACGCAACACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCTAGGGATAACAAGAAGACTAGGATTGTGCCACGTCACATTCAGCTCGCGGTGAGAAACGATGAGGAGCTGAGTAAACTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTCTTCCCAAGAAAGCTGGTGCTTCAAAACCTTCCGCTGATGAAGATTAGATTAGGGATTTGTGTTGTGGTTGTTTAGCTAATTAATGTGTAGCTTAGTCTTTCATTAGATTAGATCTGAATTAGTTTTCATTAATGGTGTTGTGTAGTCTCTCTTTTGCTTCAAAAACAAGTATTAAAATCTTATTATTTTGAATTGAATCCACAATCAATACACATTGAAGTCCTAACAAA
CDS Sequence
- >AT3G20670.1
ATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGTTGCTAAGAAATCAACATCGAGAAGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTCGTTTTCTAAAGAACGGCAAGTACGCAACACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCTAGGGATAACAAGAAGACTAGGATTGTGCCACGTCACATTCAGCTCGCGGTGAGAAACGATGAGGAGCTGAGTAAACTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTCTTCCCAAGAAAGCTGGTGCTTCAAAACCTTCCGCTGATGAAGATTAG
Protein Sequence
- >AT3G20670.1
MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASKPSADED