Information report for AT3G20630
Gene Details
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Functional Descriptions
- CS16078 — embryo defective; enlarged endosperm nuclei, immature seeds are filled with a watery endosperm and have a glassy appearance.
- CS16079 — embryo defective; enlarged endosperm nuclei, immature seeds are filled with a watery endosperm and have a glassy appearance.
- CS860099 — Embryo defective, lethal.
- CS860100 — Embryo defective, lethal.
- da3-1 — Large cotyledons and flowers, showed higher ploidy levels than wt.
- da3-1 sud6-1 — sud6-1 partially suppresses the large cotyle- don and growth retardation phenotypes of da3-1(single mutant produces large cotyledons and flowers with increased cell size and endoreduplication.)
- elh — Elongated hypocotyl when grown at 28C. Increased cell size in leaves and other tissues due to cell elongation vs increase in cell number.
- per1 — per1 plants show normal root hair development under control conditions but displayed an inhibited root hair elongation phenotype upon Pi deficiency. The per1 mutant exhibits a pleiotropic phenotype under control conditions, resembling Pi-deficient plants in several aspects.
- tni-1 — Decreased auxin responsiveness. Polymorphic phenotype with many developmental defects including tricotyledon,increased floral organ number, reduced lateral roots, abnormal leaf venation. Also resembles some auxin transport mutants.
- tni-1 — Leaves are larger, rounder and curve upward compared to wild type. Leaf lamina are cup shaped. Increased branding of trichomes.
Functional Keywords
Literature and News
- The ubiquitin-specific protease family from Arabidopsis. AtUBP1 and 2 are required for the resistance to the amino acid analog canavanine. DOI: 10.1104/pp.124.4.1828 ; PMID: 11115897
- Diversity of TITAN functions in Arabidopsis seed development. DOI: 7048 ; PMID: 11788751
- Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development. DOI: 10.1111/j.1365-313X.2008.03557.x ; PMID: 18485060
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Insights into the localization and function of the membrane trafficking regulator GNOM ARF-GEF at the Golgi apparatus in Arabidopsis. DOI: 10.1105/tpc.114.125880 ; PMID: 25012191
- The Arabidopsis thaliana RNA-binding protein FCA regulates thermotolerance by modulating the detoxification of reactive oxygen species. DOI: 10.1111/nph.13079 ; PMID: 25266977
- UBIQUITIN-SPECIFIC PROTEASE14 Interacts with ULTRAVIOLET-B INSENSITIVE4 to Regulate Endoreduplication and Cell and Organ Growth in Arabidopsis. DOI: 10.1105/tpc.16.00007 ; PMID: 27099260
- UBIQUITIN-SPECIFIC PROTEASES function in plant development and stress responses. DOI: 10.1007/s11103-017-0633-5 ; PMID: 28695315
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- The Ubiquitin-Specific Protease TNI/UBP14 Functions in Ubiquitin Recycling and Affects Auxin Response. DOI: 10.1104/pp.20.00689 ; PMID: 32859753
- The UBP14-CDKB1;1-CDKG2 cascade controls endoreduplication and cell growth in Arabidopsis. DOI: 10.1093/plcell/koac002 ; PMID: 34999895
- An SNW/SKI-INTERACTING PROTEIN influences endoreduplication and cell growth in Arabidopsis. DOI: 10.1093/plphys/kiac415 ; PMID: 36063458
- Control of lateral root initiation by DA3 in Arabidopsis. DOI: 10.1016/j.celrep.2022.111913 ; PMID: 36640335
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A654FB00
- EMBL: CACRSJ010000106
- AlphaFoldDB: A0A654FB00
- EnsemblPlants: AT3G20630.1
- Gramene: AT3G20630.1
- KEGG: ath:AT3G20630
- Orthologous matrix: FVPCEHT
- ExpressionAtlas: AT3G20630
- InterPro: IPR001394, IPR001607, IPR009060
- PANTHER: PTHR21646, PTHR21646:SF10
- SUPFAM: SSF46934, SSF54001, SSF57850
- PROSITE: PS00972, PS00973, PS50030
- Gene3D: 1.10.8.10, 3.30.40.10, 3.90.70.10
- SWISS-MODEL: A0A654FB00
- Conserved Domain Database: cd02658, cd14295, cd14388
Sequences
cDNA Sequence
- >AT3G20630.1
TTTCCCCAAATTGACAACAACTTTTGCTTTATTGCAATTCTCCCCAAAACCTCAGGCAATAAGAAAGGAATTTAGAAGGACGACGACGTTTCTCATCATCCGTACCTTCCTTGTTAAGTTGTAACGGAGACGTGTGATATCACTCAACAACACATATCTGTCTCTCCGTCGTCAGAGAGTTTCTTTCGCCGATTTCGCAAAAACCCTATGGAGCTCCTCCGATCCAACTTGTCTAGGGTTCAGATCCCTGAACCTACTCATCGCATCTACAAGCATGAGTGTTGCATCTCCTTCGATACTCCGAGATCCGAAGGAGGATTGTTCGTTGATATGAATAGTTTTCTTGCTTTCGGGAAGGATTATGTTTCTTGGAACTATGAGAAGACTGGAAACCCTGTTTATCTTCATATTAAGCAGACTAGGAAGTCTATTCCCGAGGATCGGCCTCTCAAGAAACCGACTCTGCTCGCTATAGGTGTTGATGGAGGCTTTGATAACAATGAGCCAGAGTACGAGGAGTCTTATAGCATAGTCATACTTCCGGATTTTGTTTCACTCCCGTTTCCTTCTGTTGAGCTACCAGAGAAGGTGAGGATTGCTGTCGATACTGTAGTGAATGCCGTTGGTGCTGAGCGGAAAGAGCAAGTTGCAGCTTGGACAGCTGAGAAAAAGTTAATTAGTGAACATGCATTGACACTGCAGCAAATCAAGAGTGGCATTGTCATTCCTCCCTCTGGTTGGAAATGTTCTAAGTGTGATAAGACGGAGAATCTCTGGCTTAATCTTACCGATGGAATGATTCTCTGTGGAAGAAAAAACTGGGATGGAACTGGTGGAAACAACCATGCTGTTGAGCACTACAAAGAGACAGCCTACCCTCTTGCTGTAAAGCTTGGAACTATCACTGCTGACTTAGAAGCAGCAGATGTTTATTCCTATCCGGAAGATGACAGTGTTTTGGACCCGCTCCTGGCTGAGCATCTGGCCCATTTTGGAATTGACTTCTCGTCGATGCAGAAGACTGAAATGACAACTGCTGAAAGAGAACTTGATCAAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGACCTGGATATACCGGACTTGTCAATCTTGGGAACAGTTGCTACTTGGCAGCTACGATGCAGATTGTTTTCTCTACCCATTCATTTATTTCAAGATACTTTTCACATCAGAGCTTAAAGATGGCTTTTGAGATGGCTCCTGCTGATCCAACTTTGGACCTCAATATGCAATTAACAAAGCTTGGACACGGCTTACTATCTGGGAAGTACTCAATGCCTGCAACTCAGAAGGATGCTACAACTGGAGATCCTAGACAAGAAGGAATACCTCCTCGCATGTTCAAAAACGTAATTGCCGCGAGCCACGCAGAATTCTCTTCTATGAGACAGCAGGATGCTCTCGACTTTTTCCTCCATCTGGTAGGCAAGGTTGAGCGTGCTAGCAACACGACACCAGATTTAGACCCCTCGAGGAGCTTCAAGTTTGGAATAGAAGAGAAGATCCTTTGTCCGTCTGGAAAGGTTGGATATAATAAGAGGGAAGACTGTATTCTTTCTTTGAACATTCCGCTACATGAGGCAACTAATAAAGATGAATTAGAAGCCTTTCACAAGCAAAAAGCAGGAAAAGGATTGGAAGAGAATGATATGAGGTCAAGTGATGAAATAGTACGCCCACGAGTTCCTTTAGAAGCCTGTCTAGCAAATTTTGCATCATCAGAGCCGATTGAAGACTACTATAGCTCTGCTTTGAAGGGAATGACAACAGCTATCAAGACAACTGGTTTGACATCTTTCCCAGATTATTTGGTCTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAGAAACTTGATGTATACATTGATGTTCCGGATGTTATTGATATCAGCCACATGCGTAGCAAAGGACTCCAACCTGGGGAAGAACTGTTGCCAGATGGCGTTCCAGAAGAAGTGATGGAATCAGCGCAGCCCGTGGCAAATGAGGAGATAGTTGCACAGCTAGTCTCAATGGGATTTAGCCAGCTTCACTGCCAGAAAGCTGCCATAAATACTTCCAATGCTGGGGTTGAAGAGGCAATGAACTGGTTACTTTCTCACATGGATGATCCAGACATCGATGCACCAATCTCCCACCAGACATCTGACATTGATCAATCAAGCGTTGATACCTTACTCTCCTTTGGTTTTGCTGAAGATGTTGCTCGGAAGGCACTAAAAGCCTCGGGAGGAGACATTGAGAAAGCAACAGACTGGGTATTCAACAACCCTAATGCATCTGTTTCAGACATGGATGTATCCTCTAGCAATTCAGCGCAGACTCCGGCTCAAAGTGGATTACCAGATGGAGGAGGGAAATACAAGCTGTTTGGAATAGTAAGTCACATGGGAACATCAGTGCACTGTGGTCATTACGTGGCTCACATATTGAAAGAAGGCCGCTGGGTAATTTTCAATGACGACAAAGTTGGTATCTCGACTGATCCTCCTAAAGACATGGGTTATGTCTACTTCTTTCAGCGGCTTGATTGATTCGATGGAGCCAGTTACAGAGACAAAAACTAATCCTTTTTTTTTTAAATAGAAACTTTTAAGGTCGATAGGGTTTTTAACATTTGGATTGAGGTGACCCATGTGACTAGTTTCGGTTCCAAAATCTTACATGTGGATTAGTAAATTTGGTTCACTTGATGATTTTATCTGTGGAACTTCGTCACAAATTTTAAGACCCGTTTAGAAGCTAAACATCATTCGCTGTCTTTTTAATTTGCCTCCTCAGTTCTCA
CDS Sequence
- >AT3G20630.1
ATGGAGCTCCTCCGATCCAACTTGTCTAGGGTTCAGATCCCTGAACCTACTCATCGCATCTACAAGCATGAGTGTTGCATCTCCTTCGATACTCCGAGATCCGAAGGAGGATTGTTCGTTGATATGAATAGTTTTCTTGCTTTCGGGAAGGATTATGTTTCTTGGAACTATGAGAAGACTGGAAACCCTGTTTATCTTCATATTAAGCAGACTAGGAAGTCTATTCCCGAGGATCGGCCTCTCAAGAAACCGACTCTGCTCGCTATAGGTGTTGATGGAGGCTTTGATAACAATGAGCCAGAGTACGAGGAGTCTTATAGCATAGTCATACTTCCGGATTTTGTTTCACTCCCGTTTCCTTCTGTTGAGCTACCAGAGAAGGTGAGGATTGCTGTCGATACTGTAGTGAATGCCGTTGGTGCTGAGCGGAAAGAGCAAGTTGCAGCTTGGACAGCTGAGAAAAAGTTAATTAGTGAACATGCATTGACACTGCAGCAAATCAAGAGTGGCATTGTCATTCCTCCCTCTGGTTGGAAATGTTCTAAGTGTGATAAGACGGAGAATCTCTGGCTTAATCTTACCGATGGAATGATTCTCTGTGGAAGAAAAAACTGGGATGGAACTGGTGGAAACAACCATGCTGTTGAGCACTACAAAGAGACAGCCTACCCTCTTGCTGTAAAGCTTGGAACTATCACTGCTGACTTAGAAGCAGCAGATGTTTATTCCTATCCGGAAGATGACAGTGTTTTGGACCCGCTCCTGGCTGAGCATCTGGCCCATTTTGGAATTGACTTCTCGTCGATGCAGAAGACTGAAATGACAACTGCTGAAAGAGAACTTGATCAAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGACCTGGATATACCGGACTTGTCAATCTTGGGAACAGTTGCTACTTGGCAGCTACGATGCAGATTGTTTTCTCTACCCATTCATTTATTTCAAGATACTTTTCACATCAGAGCTTAAAGATGGCTTTTGAGATGGCTCCTGCTGATCCAACTTTGGACCTCAATATGCAATTAACAAAGCTTGGACACGGCTTACTATCTGGGAAGTACTCAATGCCTGCAACTCAGAAGGATGCTACAACTGGAGATCCTAGACAAGAAGGAATACCTCCTCGCATGTTCAAAAACGTAATTGCCGCGAGCCACGCAGAATTCTCTTCTATGAGACAGCAGGATGCTCTCGACTTTTTCCTCCATCTGGTAGGCAAGGTTGAGCGTGCTAGCAACACGACACCAGATTTAGACCCCTCGAGGAGCTTCAAGTTTGGAATAGAAGAGAAGATCCTTTGTCCGTCTGGAAAGGTTGGATATAATAAGAGGGAAGACTGTATTCTTTCTTTGAACATTCCGCTACATGAGGCAACTAATAAAGATGAATTAGAAGCCTTTCACAAGCAAAAAGCAGGAAAAGGATTGGAAGAGAATGATATGAGGTCAAGTGATGAAATAGTACGCCCACGAGTTCCTTTAGAAGCCTGTCTAGCAAATTTTGCATCATCAGAGCCGATTGAAGACTACTATAGCTCTGCTTTGAAGGGAATGACAACAGCTATCAAGACAACTGGTTTGACATCTTTCCCAGATTATTTGGTCTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAGAAACTTGATGTATACATTGATGTTCCGGATGTTATTGATATCAGCCACATGCGTAGCAAAGGACTCCAACCTGGGGAAGAACTGTTGCCAGATGGCGTTCCAGAAGAAGTGATGGAATCAGCGCAGCCCGTGGCAAATGAGGAGATAGTTGCACAGCTAGTCTCAATGGGATTTAGCCAGCTTCACTGCCAGAAAGCTGCCATAAATACTTCCAATGCTGGGGTTGAAGAGGCAATGAACTGGTTACTTTCTCACATGGATGATCCAGACATCGATGCACCAATCTCCCACCAGACATCTGACATTGATCAATCAAGCGTTGATACCTTACTCTCCTTTGGTTTTGCTGAAGATGTTGCTCGGAAGGCACTAAAAGCCTCGGGAGGAGACATTGAGAAAGCAACAGACTGGGTATTCAACAACCCTAATGCATCTGTTTCAGACATGGATGTATCCTCTAGCAATTCAGCGCAGACTCCGGCTCAAAGTGGATTACCAGATGGAGGAGGGAAATACAAGCTGTTTGGAATAGTAAGTCACATGGGAACATCAGTGCACTGTGGTCATTACGTGGCTCACATATTGAAAGAAGGCCGCTGGGTAATTTTCAATGACGACAAAGTTGGTATCTCGACTGATCCTCCTAAAGACATGGGTTATGTCTACTTCTTTCAGCGGCTTGATTGA
Protein Sequence
- >AT3G20630.1
MELLRSNLSRVQIPEPTHRIYKHECCISFDTPRSEGGLFVDMNSFLAFGKDYVSWNYEKTGNPVYLHIKQTRKSIPEDRPLKKPTLLAIGVDGGFDNNEPEYEESYSIVILPDFVSLPFPSVELPEKVRIAVDTVVNAVGAERKEQVAAWTAEKKLISEHALTLQQIKSGIVIPPSGWKCSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETAYPLAVKLGTITADLEAADVYSYPEDDSVLDPLLAEHLAHFGIDFSSMQKTEMTTAERELDQNTNFDWNRIQESGKELVPVFGPGYTGLVNLGNSCYLAATMQIVFSTHSFISRYFSHQSLKMAFEMAPADPTLDLNMQLTKLGHGLLSGKYSMPATQKDATTGDPRQEGIPPRMFKNVIAASHAEFSSMRQQDALDFFLHLVGKVERASNTTPDLDPSRSFKFGIEEKILCPSGKVGYNKREDCILSLNIPLHEATNKDELEAFHKQKAGKGLEENDMRSSDEIVRPRVPLEACLANFASSEPIEDYYSSALKGMTTAIKTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKGLQPGEELLPDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPISHQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNPNASVSDMDVSSSNSAQTPAQSGLPDGGGKYKLFGIVSHMGTSVHCGHYVAHILKEGRWVIFNDDKVGISTDPPKDMGYVYFFQRLD