Gene Details:
- Gene ID: AT3G20420
- Gene Symbol: ATRTL2, RTL2
- Gene Name: RNASEIII-LIKE 2, RNAse THREE-like protein 2
- Description: RNAse THREE-like protein 2;(source:Araport11)
- TAIR Accession: locus:2092409
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0003723 — enables — RNA binding
- GO:0004525 — enables — ribonuclease III activity
- GO:0005737 — is active in — cytoplasm
- GO:0005634 — is active in — nucleus
- GO:0030422 — involved in — siRNA processing
- GO:0005737 — located in — cytoplasm
- GO:0005634 — located in — nucleus
- GO:0009507 — located in — chloroplast
Germplasm Phenotype:
- AtRtl2 — Inhibits cleavage of the 3’ETS from rRNA precursor
Literature:
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. DOI: 10.1007/s11103-004-6853-5 ; PMID: 15821876
- Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. DOI: 10.1016/j.cub.2010.01.051 ; PMID: 20226671
- ribonucleases are key players in the control of plastid gene expression. DOI: 10.1093/jxb/err401 ; PMID: 22140236
- A complex of Arabidopsis DRB proteins can impair dsRNA processing. DOI: 10.1261/rna.059519.116 ; PMID: 28232389
Sequences:
cDNA Sequence
- >AT3G20420.1
CTTTCCTTATTTGTCCTGAGGACTATAGTCAATGAAAAAGTCAAAACTAATAGAATTAGGAAAACAAAAAGAATTAAAAGGAAAATTGAAACAGAGAAGACTTGGCGTCTCTTTAGATTCTCTCTACCATGGATCACTCTATCTCACCGGAGTACAATTTCCCGGCCATCACTCGCTGTAGTTTATCCAATTCACTTCCTCACCGTCCACCATCACCACTGCCGTCTTCGGCCGATATCCACCGCTTCTACAATTCTCTTTCCCCATCAGCACCAAGCGTTCCGGTTTCGTCGGAGATGGAGTCTATGGAAGCAGTAGAGAAGATACTCAACTACAAATTCAGTAACAAGAGTCTTCTCAAGGAAGCGATTACACACACCTCGTGTACAGACTTTCCTTCTTACGAGCGGCTAGAGTTCATAGGCGATAGTGCTATTGGTTTAGCAATCTCAAATTACCTATACCTAACGTACCCTAGCCTTGAGCCACACGACTTGTCTCTGTTGAGAGCAGCTAATGTTAGTACTGAGAAACTCGCTCGTGTCTCTCTTAATCATGGTCTCTATTCATTTCTTCGACGCAATGCTCCTTCTTTAGATGAAAAGGTTAAAGAGTTCTCAGAGGCGGTGGGGAAAGAAGATGATTTGTCAGTGTCATATGGTGGATTAGTCAAAGCCCCTAAAGTTCTAGCTGATCTTTTTGAGTCTTTAGCTGGAGCTGTGTATGTTGATGTCAACTTTGATCTACAAAGACTATGGGTGATCTTTAGGGGTCTTTTGGAACCGATAGTTACATTGGACGATTTGCAGAAGCAACCTCAACCTGTGTCTATGCTTTTTAAATTATGTCATAAACATAAGAAGCGAATCGACATCAAGAATTGGAAAGATGGTAATGTCAGTATTGCTGTTATATATCTTGATGATGAGCTTTTGGCTTCAGGCCGAGCTGAGAATAAAGATATCGCAAGGCTGATCGCTGCTAAAGAAGCGTTACGGAAGTTGTCAGAAGTTTTTCCCGTTGAAATGGTTATTGATGAAGATAGTGTAGAGATTCAACTTACACATGCTAAAACGAAGTTGAACGAGATTTGCTTAAAGAAAAAGTGGCCTAAGCCTATCTACAGCGTTGAGGAAGATAGAAGCTCGGTACAGGGAAAGAGATTTGTTTGCTCTGCTAAGATTAAGATAACAGAAGAAAAAACATTATATATGAAGGGAGATGAACAGTCCAAGATAAAGAAAGCAGAAAGCTCCTCGGCGTATCACATGATTAGAGCCTTGAGAAAATCTCATTATCTCTAATGGTCTTGTATCATTTGTAAAATTAAAAATTGTATTTACCCTTGAACCAAAAACACCCTCTAATGAATCACTTTCGAATTTTATGTTTTTCTTTGAACCTACTAGCCTGGGGTTAATTAGTCTCTTGTACCCCCACTACGGAGAATTTGTAGGCGAACCAAGCCATTTGCCAAAGATACT
CDS Sequence
- >AT3G20420.1
ATGGATCACTCTATCTCACCGGAGTACAATTTCCCGGCCATCACTCGCTGTAGTTTATCCAATTCACTTCCTCACCGTCCACCATCACCACTGCCGTCTTCGGCCGATATCCACCGCTTCTACAATTCTCTTTCCCCATCAGCACCAAGCGTTCCGGTTTCGTCGGAGATGGAGTCTATGGAAGCAGTAGAGAAGATACTCAACTACAAATTCAGTAACAAGAGTCTTCTCAAGGAAGCGATTACACACACCTCGTGTACAGACTTTCCTTCTTACGAGCGGCTAGAGTTCATAGGCGATAGTGCTATTGGTTTAGCAATCTCAAATTACCTATACCTAACGTACCCTAGCCTTGAGCCACACGACTTGTCTCTGTTGAGAGCAGCTAATGTTAGTACTGAGAAACTCGCTCGTGTCTCTCTTAATCATGGTCTCTATTCATTTCTTCGACGCAATGCTCCTTCTTTAGATGAAAAGGTTAAAGAGTTCTCAGAGGCGGTGGGGAAAGAAGATGATTTGTCAGTGTCATATGGTGGATTAGTCAAAGCCCCTAAAGTTCTAGCTGATCTTTTTGAGTCTTTAGCTGGAGCTGTGTATGTTGATGTCAACTTTGATCTACAAAGACTATGGGTGATCTTTAGGGGTCTTTTGGAACCGATAGTTACATTGGACGATTTGCAGAAGCAACCTCAACCTGTGTCTATGCTTTTTAAATTATGTCATAAACATAAGAAGCGAATCGACATCAAGAATTGGAAAGATGGTAATGTCAGTATTGCTGTTATATATCTTGATGATGAGCTTTTGGCTTCAGGCCGAGCTGAGAATAAAGATATCGCAAGGCTGATCGCTGCTAAAGAAGCGTTACGGAAGTTGTCAGAAGTTTTTCCCGTTGAAATGGTTATTGATGAAGATAGTGTAGAGATTCAACTTACACATGCTAAAACGAAGTTGAACGAGATTTGCTTAAAGAAAAAGTGGCCTAAGCCTATCTACAGCGTTGAGGAAGATAGAAGCTCGGTACAGGGAAAGAGATTTGTTTGCTCTGCTAAGATTAAGATAACAGAAGAAAAAACATTATATATGAAGGGAGATGAACAGTCCAAGATAAAGAAAGCAGAAAGCTCCTCGGCGTATCACATGATTAGAGCCTTGAGAAAATCTCATTATCTCTAA
Protein Sequence
- >AT3G20420.1
MDHSISPEYNFPAITRCSLSNSLPHRPPSPLPSSADIHRFYNSLSPSAPSVPVSSEMESMEAVEKILNYKFSNKSLLKEAITHTSCTDFPSYERLEFIGDSAIGLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEVFPVEMVIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSVQGKRFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRALRKSHYL