Information report for AT3G19950
Gene Details
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Functional Descriptions
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0061630 — enables — ubiquitin protein ligase activity
- GO:0005634 — located in — nucleus
- GO:0005737 — is active in — cytoplasm
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Gene Resources
- UniProt: A0A178VDZ4
- EMBL: LUHQ01000003
- AlphaFoldDB: A0A178VDZ4
- EnsemblPlants: AT3G19950.1
- Gramene: AT3G19950.1
- KEGG: ath:AT3G19950
- Orthologous matrix: ERGWESW
- ExpressionAtlas: AT3G19950
- InterPro: IPR001841, IPR013083, IPR039525
- PANTHER: PTHR15710, PTHR15710:SF208
- SUPFAM: SSF57850
- PROSITE: PS50089
- Gene3D: 3.30.40.10
- SWISS-MODEL: A0A178VDZ4
- Conserved Domain Database: cd16667
Homologs
- Brachypodium distachyon BRADI_3g51980v3
- Daucus carota DCAR_024960
- Musa acuminata Ma05_g07420
- Oryza sativa OsSIRP1, OsDSG1, OsCLR1;DSNP1, LOC_Os02g46100
- Petunia inflata Peinf101Scf01969g06011.1
- Prunus avium Pav_sc0000661.1_g010.1.br
- Sesamum indicum SIN_1007440
Sequences
cDNA Sequence
- >AT3G19950.1
GTTGGAGTCGGCCACATATGACATAACTGAGAATTACTTTTCTCTCTCCTCTGACGGTTCTTTTCTTCCTTCGTCCTCTCGTTTTTTTTGTTTCGTCGTCTCTCTCTCGCGCTCTGAAAAATTCGCAGAATCCGTCATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCAGCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCAAACAGTCACAATCTCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAATACGAAGACCCTAACCCTAATCAATCCCTCAATTTCAACCCTAACTCTTCTGATTCCTTTTTCCCCATGGCCGATCCTTTCTCCACCTTGCTCCCGCTCATATTCGGCTCTTCCGCTGCCGCTCCTTCCGGCATGGACTTCATGAGCTTATTCGGTCCTTCGATGCAACCACAGGCTCGTTCCACTCAGCAGAATCCTCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTCAGAATCATCTCCAGACTTTGCGATCTAGCGGTACGCACTTTGAGTTCGTGATCGAGAATCATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGATTACTTCTTTGGTCCAGGTCTTGAGCAGTTGATTCAGCAACTAGCTGAGAATGATCCTAATCGTTACGGAACTCCTCCTGCTTCCAAATCCGCCATTGATGCTCTTCCTACTGTTAAGGTAACGAAGGATATGTTGAAATCGGAGATGAACCAATGCGCGGTGTGTATGGATGAGTTTGAGGATGGTAGCGATGTTAAGCAGATGCCTTGTAAGCACGTCTTTCATCAGGACTGTTTGCTCCCTTGGCTGGAGTTGCATAATTCGTGTCCTGTTTGTCGATTCGAGTTGCCTACGGATGATCCTGATTATGAGAACAGGAGTCAAGGAAGTCAGGGGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGCCGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCAGGCTCGGGAGCACCTGGTACTGGTGGAGGTAATCTTGAGACCAGGGGTGAAGATTTGGATTGAGAATGTGTTGGCCAGTCATTGCTTGGAAACTGGATCAGAAGGATATCTATCCCAAGTTCTCCAACAAAAAATGAAAAAACAGTTTTATTAGGGAAACAAAAGTGACATTGAGGTCTTACCATATTTTGTACATTTAAAAAAAGTTATTTTTTTCGTTGTTATTTTGGGATTATATAACGAATGTGAAAGTTTTTAAAAATCGCAAATTTTCAATTGAGTGTTGTTTATTTTTCTCATAAACA - >AT3G19950.3
GTTGGAGTCGGCCACATATGACATAACTGAGAATTACTTTTCTCTCTCCTCTGACGGTTCTTTTCTTCCTTCGTCCTCTCGTTTTTTTTGTTTCGTCGTCTCTCTCTCGCGCTCTGAAAAATTCGCAGAATCCGTCATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCAGCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCAAACAGTCACAATCTCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAATACGAAGACCCTAACCCTAATCAATCCCTCAATTTCAACCCTAACTCTTCTGATTCCTTTTTCCCCATGGCCGATCCTTTCTCCACCTTGCTCCCGCTCATATTCGGCTCTTCCGCTGCCGCTCCTTCCGGCATGGACTTCATGAGCTTATTCGGTCCTTCGATGCAACCACAGGCTCGTTCCACTCAGCAGAATCCTCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTCAGAATCATCTCCAGACTTTGCGATCTAGCGGTACGCACTTTGAGTTCGTGATCGAGAATCATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGATTACTTCTTTGGTCCAGGTCTTGAGCAGTTGATTCAGCAACTAGCTGAGAATGATCCTAATCGTTACGGAACTCCTCCTGCTTCCAAATCCGCCATTGATGCTCTTCCTACTGTTAAGGTAACGAAGGATATGTTGAAATCGGAGATGAACCAATGCGCGGTGTGTATGGATGAGTTTGAGGATGGTAGCGATGTTAAGCAGATGCCTTGTAAGCACGTCTTTCATCAGGACTGTTTGCTCCCTTGGCTGGAGTTGCATAATTCGTGTCCTGTTTGTCGATTCGAGTTGCCTACGGATGATCCTGATTATGAGAACAGGAGTCAAGGAAGTCAGGGGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGCCGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCAGGCTCGGGAGCACCTGGTACTGGTGGAGGTAATCTTGAGACCAGGGGTGAAGATTTGGATTGAGAATGTGTTGGCCAGTCATTGCTTGGAAACTGGATCAGAAGGATATCTATCCCAAGTTCTCCAACAAAAAATGAAAAAACAGTTTTATTAGGGAAACAAAAGTGACATTGAGGTCTTACCATATTTTGTACATTTAAAAAAAGTTATTTTTTTCGTTGTTATTTTGGGATTATATAACGAATGTGAAAGTTTTTAAAAATCGCAAATTTTCAATTGAGTGTTGTTTATTTTTCTCATAAACA - >AT3G19950.2
GTTGGAGTCGGCCACATATGACATAACTGAGAATTACTTTTCTCTCTCCTCTGACGGTTCTTTTCTTCCTTCGTCCTCTCGTTTTTTTTGTTTCGTCGTCTCTCTCTCGCGCTCTGAAAAATTCGCAGAATCCGTCATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCAGCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCAAACAGTCACAATCTCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAATACGAAGACCCTAACCCTAATCAATCCCTCAATTTCAACCCTAACTCTTCTGATTCCTTTTTCCCCATGGCCGATCCTTTCTCCACCTTGCTCCCGCTCATATTCGGCTCTTCCGCTGCCGCTCCTTCCGGCATGGACTTCATGAGCTTATTCGGTCCTTCGATGCAACCACAGGCTCGTTCCACTCAGCAGAATCCTCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTCAGAATCATCTCCAGACTTTGCGATCTAGCGGTACGCACTTTGAGTTCGTGATCGAGAATCATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGATTACTTCTTTGGTCCAGGTCTTGAGCAGTTGATTCAGCAACTAGCTGAGAATGATCCTAATCGTTACGGAACTCCTCCTGCTTCCAAATCCGCCATTGATGCTCTTCCTACTGTTAAGGTAACGAAGGATATGTTGAAATCGGAGATGAACCAATGCGCGGTGTGTATGGATGAGTTTGAGGATGGTAGCGATGTTAAGCAGATGCCTTGTAAGCACGTCTTTCATCAGGACTGTTTGCTCCCTTGGCTGGAGTTGCATAATTCGTGTCCTGTTTGTCGATTCGAGTTGCCTACGGATGATCCTGATTATGAGAACAGGAGTCAAGGAAGTCAGGGGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGCCGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCAGGCTCGGGAGCACCTGGTACTGGTGGAGGTAATCTTGAGACCAGGGGTGAAGATTTGGATTGAGAATGTGTTGGCCAGTCATTGCTTGGAAACTGGATCAGAAGGATATCTATCCCAAGTTCTCCAACAAAAAATGAAAAAACAGTTTTATTAGGGAAACAAAAGTGACATTGAGGTCTTACCATATTTTGTACATTTAAAAAAAGTTATTTTTTTCGTTGTTATTTTGGGATTATATAACGAATGTGAAAGTTTTTAAAAATCGCAAATTTTCAATTGAGTGTTGTTTATTTTTCTCATAAACA
CDS Sequence
- >AT3G19950.1
ATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCAGCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCAAACAGTCACAATCTCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAATACGAAGACCCTAACCCTAATCAATCCCTCAATTTCAACCCTAACTCTTCTGATTCCTTTTTCCCCATGGCCGATCCTTTCTCCACCTTGCTCCCGCTCATATTCGGCTCTTCCGCTGCCGCTCCTTCCGGCATGGACTTCATGAGCTTATTCGGTCCTTCGATGCAACCACAGGCTCGTTCCACTCAGCAGAATCCTCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTCAGAATCATCTCCAGACTTTGCGATCTAGCGGTACGCACTTTGAGTTCGTGATCGAGAATCATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGATTACTTCTTTGGTCCAGGTCTTGAGCAGTTGATTCAGCAACTAGCTGAGAATGATCCTAATCGTTACGGAACTCCTCCTGCTTCCAAATCCGCCATTGATGCTCTTCCTACTGTTAAGGTAACGAAGGATATGTTGAAATCGGAGATGAACCAATGCGCGGTGTGTATGGATGAGTTTGAGGATGGTAGCGATGTTAAGCAGATGCCTTGTAAGCACGTCTTTCATCAGGACTGTTTGCTCCCTTGGCTGGAGTTGCATAATTCGTGTCCTGTTTGTCGATTCGAGTTGCCTACGGATGATCCTGATTATGAGAACAGGAGTCAAGGAAGTCAGGGGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGCCGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCAGGCTCGGGAGCACCTGGTACTGGTGGAGGTAATCTTGAGACCAGGGGTGAAGATTTGGATTGA - >AT3G19950.3
ATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCAGCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCAAACAGTCACAATCTCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAATACGAAGACCCTAACCCTAATCAATCCCTCAATTTCAACCCTAACTCTTCTGATTCCTTTTTCCCCATGGCCGATCCTTTCTCCACCTTGCTCCCGCTCATATTCGGCTCTTCCGCTGCCGCTCCTTCCGGCATGGACTTCATGAGCTTATTCGGTCCTTCGATGCAACCACAGGCTCGTTCCACTCAGCAGAATCCTCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTCAGAATCATCTCCAGACTTTGCGATCTAGCGGTACGCACTTTGAGTTCGTGATCGAGAATCATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGATTACTTCTTTGGTCCAGGTCTTGAGCAGTTGATTCAGCAACTAGCTGAGAATGATCCTAATCGTTACGGAACTCCTCCTGCTTCCAAATCCGCCATTGATGCTCTTCCTACTGTTAAGGTAACGAAGGATATGTTGAAATCGGAGATGAACCAATGCGCGGTGTGTATGGATGAGTTTGAGGATGGTAGCGATGTTAAGCAGATGCCTTGTAAGCACGTCTTTCATCAGGACTGTTTGCTCCCTTGGCTGGAGTTGCATAATTCGTGTCCTGTTTGTCGATTCGAGTTGCCTACGGATGATCCTGATTATGAGAACAGGAGTCAAGGAAGTCAGGGGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGCCGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCAGGCTCGGGAGCACCTGGTACTGGTGGAGGTAATCTTGAGACCAGGGGTGAAGATTTGGATTGA - >AT3G19950.2
ATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCAGCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCAAACAGTCACAATCTCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAATACGAAGACCCTAACCCTAATCAATCCCTCAATTTCAACCCTAACTCTTCTGATTCCTTTTTCCCCATGGCCGATCCTTTCTCCACCTTGCTCCCGCTCATATTCGGCTCTTCCGCTGCCGCTCCTTCCGGCATGGACTTCATGAGCTTATTCGGTCCTTCGATGCAACCACAGGCTCGTTCCACTCAGCAGAATCCTCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTCAGAATCATCTCCAGACTTTGCGATCTAGCGGTACGCACTTTGAGTTCGTGATCGAGAATCATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGATTACTTCTTTGGTCCAGGTCTTGAGCAGTTGATTCAGCAACTAGCTGAGAATGATCCTAATCGTTACGGAACTCCTCCTGCTTCCAAATCCGCCATTGATGCTCTTCCTACTGTTAAGGTAACGAAGGATATGTTGAAATCGGAGATGAACCAATGCGCGGTGTGTATGGATGAGTTTGAGGATGGTAGCGATGTTAAGCAGATGCCTTGTAAGCACGTCTTTCATCAGGACTGTTTGCTCCCTTGGCTGGAGTTGCATAATTCGTGTCCTGTTTGTCGATTCGAGTTGCCTACGGATGATCCTGATTATGAGAACAGGAGTCAAGGAAGTCAGGGGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGCCGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCAGGCTCGGGAGCACCTGGTACTGGTGGAGGTAATCTTGAGACCAGGGGTGAAGATTTGGATTGA
Protein Sequence
- >AT3G19950.1
MSSGVNSTGSAAAAPEVDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYENRSQGSQGSGDGQGSVEGQQTPRFSIQLPWPFRRQDGSGSGSGAPGTGGGNLETRGEDLD - >AT3G19950.3
MSSGVNSTGSAAAAPEVDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYENRSQGSQGSGDGQGSVEGQQTPRFSIQLPWPFRRQDGSGSGSGAPGTGGGNLETRGEDLD - >AT3G19950.2
MSSGVNSTGSAAAAPEVDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYENRSQGSQGSGDGQGSVEGQQTPRFSIQLPWPFRRQDGSGSGSGAPGTGGGNLETRGEDLD