Information report for AT3G19760
Gene Details
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Functional Descriptions
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0001666 — acts upstream of or within — response to hypoxia
- GO:0003729 — enables — mRNA binding
- GO:0005515 — enables — protein binding
- GO:0005730 — is active in — nucleolus
- GO:0005730 — located in — nucleolus
- GO:0006397 — acts upstream of or within — mRNA processing
- GO:0005634 — located in — nucleus
- GO:0035145 — part of — exon-exon junction complex
- GO:0003724 — enables — RNA helicase activity
- GO:0071013 — part of — catalytic step 2 spliceosome
- GO:0016607 — located in — nuclear speck
- GO:0005829 — located in — cytosol
- GO:0005654 — located in — nucleoplasm
Functional Keywords
Literature and News
- ARC5, a cytosolic dynamin-like protein from plants, is part of the chloroplast division machinery. DOI: 10.1073/pnas.0530206100 ; PMID: 12642673
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
- An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): characterization and microsatellite markers. DOI: 10.1186/1471-2229-6-16 ; PMID: 16928278
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia. DOI: 10.1105/tpc.108.060434 ; PMID: 19435936
- Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. DOI: 10.1104/pp.109.152413 ; PMID: 20118269
- The PRP6-like splicing factor STA1 is involved in RNA-directed DNA methylation by facilitating the production of Pol V-dependent scaffold RNAs. DOI: 10.1093/nar/gkt639 ; PMID: 23877244
- The expanding functions of cellular helicases: the tombusvirus RNA replication enhancer co-opts the plant eIF4AIII-like AtRH2 and the DDX5-like AtRH5 DEAD-box RNA helicases to promote viral asymmetric RNA replication. DOI: 10.1371/journal.ppat.1004051 ; PMID: 24743583
- The RNA Polymerase II C-Terminal Domain Phosphatase-Like Protein FIERY2/CPL1 Interacts with eIF4AIII and Is Essential for Nonsense-Mediated mRNA Decay in Arabidopsis. DOI: 10.1105/tpc.15.00771 ; PMID: 26887918
- MRF Family Genes Are Involved in Translation Control, Especially under Energy-Deficient Conditions, and Their Expression and Functions Are Modulated by the TOR Signaling Pathway. DOI: 10.1105/tpc.17.00563 ; PMID: 29084871
- Protein and metabolite composition of Arabidopsis stress granules. DOI: 10.1111/nph.15690 ; PMID: 30664249
- Pathogen-Associated Molecular Pattern-Triggered Immunity Involves Proteolytic Degradation of Core Nonsense-Mediated mRNA Decay Factors During the Early Defense Response. DOI: 10.1105/tpc.19.00631 ; PMID: 32086363
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- CASC3 Biomolecular Condensates Restrict Turnip Crinkle Virus by Limiting Host Factor Availability. DOI: 10.1016/j.jmb.2023.167956 ; PMID: 36642157
- Analysis of the Arabidopsis nuclear proteome and its response to cold stress. DOI: 10.1046/j.1365-313x.2003.01907.x ; PMID: 14617066
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A5S9XDT0
- EMBL: CACSHJ010000089, LR881468
- AlphaFoldDB: A0A5S9XDT0
- EnsemblPlants: AT3G19760.1
- Gramene: AT3G19760.1
- KEGG: ath:AT3G19760
- Orthologous matrix: TRFHDFK
- ExpressionAtlas: AT3G19760
- InterPro: IPR001650, IPR011545, IPR014001
- PANTHER: PTHR47958
- SUPFAM: SSF52540
- PROSITE: PS51192, PS51194, PS51195
- Gene3D: 3.40.50.300
- OrthoDB: A0A5S9XDT0
- SWISS-MODEL: A0A5S9XDT0
- Conserved Domain Database: cd18045, cd18787
Homologs
- Brassica napus GSBRNA2T00069970001
- Brassica oleracea Bo4g182150
- Manihot esculenta Manes.01G259600.1.p
- Oryza sativa OsRH34, OsRH2, OseIF4A, eIF-4a;EIF4A, OsAIP2, OsAIP1;OsBAT1, PRP5;OsRH42, DDX47;TOGR1, OsRH36, OsABP
- Sesamum indicum SIN_1020948
- Solanum tuberosum Soltu.DM.12G004370
Sequences
cDNA Sequence
- >AT3G19760.1
TTACAATCGTACCCCTATTTTTAAGCCGCGCTTATCTCGAACCTATACCTGTAGAGAGGAAATAAGCATTTGGGGGAAATCAATCGAAAACCCTAGGAGAGATAAAAACAAAAATCTAGACGGAGATTTATGGCGACAGCGAATCCTGGCCGTGGAGGTGGTAGAAGAGGCGGTGGAGCTATGGATGACGATAAGTTGGTCTTCGAGACTACCGATGGAATTGAGCCCATCACGAGCTTCAATGATATGGGCATTAAGGAAGATGTGCTTCGCGGTGTCTACGAATATGGATTCGAGAAGCCTTCCGCGATTCAGCAGAGGGCTGTTATGCCGATTCTTCAAGGACGTGATGTTATTGCTCAAGCTCAGTCCGGTACCGGGAAGACATCTATGATTGCTCTCTCCGTTTGTCAAGTCGTTGATACTTCTTCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACAAACAGAGAAGACGATACAAGCTATTGGATTACATGCCAATATTCAGGCACATGCTTGCATCGGTGGGAATAGTGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTTCATGTTGTGTCTGGGACACCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTATTAAACTTCTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGGTTCAAGGACCAGATCTATGATGTTTACAGATATCTTCCACCAGATCTTCAGGTTTGCTTGGTTTCTGCAACTCTTCCTCACGAGATTTTGGAGATGACATCCAAGTTTATGACAGAACCAGTGAAGATACTTGTGAAGCGTGATGAGTTGACTCTTGAAGGAATCAAACAATTTTTTGTTGCTGTTGAGAAGGAAGAGTGGAAATTTGATACACTCTGTGATCTTTATGACACGCTTACTATCACTCAAGCTGTTATCTTCTGCAATACTAAACGAAAGGTGGATTATCTTAGTGAGAAAATGAGAAGTCACAACTTCACTGTCTCATCAATGCATGGAGACATGCCTCAGAAGGAGAGAGACGCCATCATGAATGAGTTTCGGTCAGGTGATAGTCGTGTTTTGATAACAACAGATGTATGGGCACGTGGGATTGATGTGCAACAAGTTTCTCTTGTTATCAATTATGATCTCCCCAACAACCGTGAGCTCTACATCCATCGTATTGGGCGGTCTGGTCGATTCGGGCGTAAGGGTGTTGCAATCAACTTTGTTAAAAGCGACGACATCAAGATTCTCAGAGACATTGAGCAGTACTACAGTACCCAGATTGATGAGATGCCAATGAATGTAGCTGATCTTATCTAAAAGAGCTTGTCTGAGATTTTTGTGCTTTCAGCGGGGAAGTGTCTGGATGAAAAAGTATTGTTGAGCGCTTCTGTCAAATTATTGCACTATCTTAACGGTGTATTTCCTTTGATGTTTCTGTGGGCTCTTTTGAACAAACTTAAACTCGCGTGTGGTAAATGTTTAATGACTTGAGAAGCGATTTAGGTTTAGGGTTTGGACCGTTTGGTTTTTCGTTTCCTCGTAATTGATTCTGGGGGCTTTGATTGTGGTTTGTGGGTCAAAACTCTCAACTATCACTACTTGTAAGACTTTTGCTCGACAGTTGAAACGGTTCATTGTTATCTTATTTCGTAAAGCTTGGATCATTGCAAAAATCAATCATTTGCAAAAGCAAAGCAAGTTGATGAAATTACTGGACATGA
CDS Sequence
- >AT3G19760.1
ATGGCGACAGCGAATCCTGGCCGTGGAGGTGGTAGAAGAGGCGGTGGAGCTATGGATGACGATAAGTTGGTCTTCGAGACTACCGATGGAATTGAGCCCATCACGAGCTTCAATGATATGGGCATTAAGGAAGATGTGCTTCGCGGTGTCTACGAATATGGATTCGAGAAGCCTTCCGCGATTCAGCAGAGGGCTGTTATGCCGATTCTTCAAGGACGTGATGTTATTGCTCAAGCTCAGTCCGGTACCGGGAAGACATCTATGATTGCTCTCTCCGTTTGTCAAGTCGTTGATACTTCTTCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACAAACAGAGAAGACGATACAAGCTATTGGATTACATGCCAATATTCAGGCACATGCTTGCATCGGTGGGAATAGTGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTTCATGTTGTGTCTGGGACACCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTATTAAACTTCTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGGTTCAAGGACCAGATCTATGATGTTTACAGATATCTTCCACCAGATCTTCAGGTTTGCTTGGTTTCTGCAACTCTTCCTCACGAGATTTTGGAGATGACATCCAAGTTTATGACAGAACCAGTGAAGATACTTGTGAAGCGTGATGAGTTGACTCTTGAAGGAATCAAACAATTTTTTGTTGCTGTTGAGAAGGAAGAGTGGAAATTTGATACACTCTGTGATCTTTATGACACGCTTACTATCACTCAAGCTGTTATCTTCTGCAATACTAAACGAAAGGTGGATTATCTTAGTGAGAAAATGAGAAGTCACAACTTCACTGTCTCATCAATGCATGGAGACATGCCTCAGAAGGAGAGAGACGCCATCATGAATGAGTTTCGGTCAGGTGATAGTCGTGTTTTGATAACAACAGATGTATGGGCACGTGGGATTGATGTGCAACAAGTTTCTCTTGTTATCAATTATGATCTCCCCAACAACCGTGAGCTCTACATCCATCGTATTGGGCGGTCTGGTCGATTCGGGCGTAAGGGTGTTGCAATCAACTTTGTTAAAAGCGACGACATCAAGATTCTCAGAGACATTGAGCAGTACTACAGTACCCAGATTGATGAGATGCCAATGAATGTAGCTGATCTTATCTAA
Protein Sequence
- >AT3G19760.1
MATANPGRGGGRRGGGAMDDDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI