Information report for AT3G19440
Gene Details
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Functional Descriptions
- GO:0001522 — involved in — pseudouridine synthesis
- GO:0005739 — located in — mitochondrion
- GO:0009982 — enables — pseudouridine synthase activity
- GO:0000455 — involved in — enzyme-directed rRNA pseudouridine synthesis
- GO:0009507 — located in — chloroplast
- CS72464 — elevated transient nonphotochemical quenching (NPQ) under nonsaturating light conditions, photosystem II damage and decreased biomass under long-term fluctuating light stress; reduced sodium tolerance
- SALK_008491 — Transient high NPQ in SALK_008491 is caused by loss of PGDH3.
Functional Keywords
Literature and News
- Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis. DOI: 10.1105/tpc.107.054965 ; PMID: 18599582
- In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. DOI: 10.1104/pp.111.183129 ; PMID: 21908688
- Genome-Wide Identification and Expression Analysis of Pseudouridine Synthase Family in Arabidopsis and Maize. DOI: 10.3390/ijms23052680 ; PMID: 35269820
- Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis. DOI: 10.1105/tpc.107.054965 ; PMID: 18599582
Gene Resources
- UniProt: A0A5S9XE24
- EMBL: CACSHJ010000089
- AlphaFoldDB: A0A5S9XE24
- EnsemblPlants: AT3G19440.1
- Gramene: AT3G19440.1
- KEGG: ath:AT3G19440
- Orthologous matrix: GRQAHQK
- ExpressionAtlas: AT3G19440
- InterPro: IPR006145, IPR020103, IPR050188
- PANTHER: PTHR21600, PTHR21600:SF81
- SUPFAM: SSF55120
- Gene3D: 3.30.2350.10
- OrthoDB: A0A5S9XE24
- SWISS-MODEL: A0A5S9XE24
- Conserved Domain Database: cd02869
Homologs
- Gossypium barbadense Gobar.D05G192500
Sequences
cDNA Sequence
- >AT3G19440.1
AATGACTATCGGTTCCATCTTTCCCAAGTTCCTCTGCTCCAAAACCTCTTAAACCCTAATTCGAATTTAGCCTAAACCCTAAAATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTCATCGCCAACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTACTCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCCTTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTCTGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCGTCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGAAATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGCTAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATACGCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATTCGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGGTTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTGCTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAGTGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCGAGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAGAAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCCACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGGAGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACATGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACACTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCATAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCCTTTTGGATTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCCATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTTCAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATATGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAGATTTTTTTTCTTACCGAGCTTTCTTCTTTGTGTTCATTGAGGCCCAAGTATTTGTGTATTTGGACCTGAATATTCTCATACAAAGATAAATAATTATAATTAAATGATTTTTCGCATATAATCATTATTGTGGTATGATTAACACAGTTGGTGTGATGACTGATTG - >AT3G19440.2
AATGACTATCGGTTCCATCTTTCCCAAGTTCCTCTGCTCCAAAACCTCTTAAACCCTAATTCGAATTTAGCCTAAACCCTAAAATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTCATCGCCAACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTACTCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCCTTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTCTGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCGTCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGAAATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGCTAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATACGCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATTCGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGGTTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTGCTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAGTGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCGAGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAGAAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCCACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGGAGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACATGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACACTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCATAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCCTTTTGGATTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCCATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTTCAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATATGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAGATTTTTTTTCTTACCGAGCTTTCTTCTTTGTGTTCATTGAGGCCCAAGTATTTGTGTATTTGGACCTGAATATTCTCATACAAAGATAAATAATTATAATTAAATGATTTTTCGCATATAATCATTATTGTGGTATGATTAACACAGTTGGTGTGATGACTGATTG
CDS Sequence
- >AT3G19440.1
ATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTCATCGCCAACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTACTCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCCTTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTCTGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCGTCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGAAATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGCTAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATACGCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATTCGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGGTTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTGCTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAGTGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCGAGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAGAAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCCACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGGAGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACATGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACACTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCATAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCCTTTTGGATTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCCATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTTCAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATATGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAG - >AT3G19440.2
ATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTCATCGCCAACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTACTCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCCTTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTCTGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCGTCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGAAATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGCTAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATACGCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATTCGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGGTTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTGCTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAGTGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCGAGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAGAAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCCACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGGAGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACATGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACACTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCATAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCCTTTTGGATTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCCATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTTCAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATATGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAG
Protein Sequence
- >AT3G19440.1
MAKWRLATATLRRQLQSSSPTISTFKNPTKALSAAAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFRLRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKSRVETCDKN - >AT3G19440.2
MAKWRLATATLRRQLQSSSPTISTFKNPTKALSAAAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFRLRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKSRVETCDKN