Information report for AT3G19380
Gene Details
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Functional Descriptions
- GO:0098542 — acts upstream of or within — defense response to other organism
- GO:0061630 — enables — ubiquitin protein ligase activity
- GO:0005515 — enables — protein binding
- pub25-1 — Smaller lesions when inoculated with B.cinerea, and reduced bacterial population when inoculated with Pto DC3000.
Functional Keywords
Literature and News
- Armadillo repeat proteins: beyond the animal kingdom. DOI: 10.1016/s0962-8924(03)00167-3 ; PMID: 12946625
- Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. DOI: 10.1094/MPMI-20-8-0900 ; PMID: 17722694
- Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA. DOI: 10.1007/s11103-007-9241-0 ; PMID: 17885809
- Arabidopsis PUB22 and PUB23 are homologous U-Box E3 ubiquitin ligases that play combinatory roles in response to drought stress. DOI: 10.1105/tpc.108.060699 ; PMID: 18664614
- A Regulatory Module Controlling Homeostasis of a Plant Immune Kinase. DOI: 10.1016/j.molcel.2017.12.026 ; PMID: 29358080
- PUB25 and PUB26 Promote Plant Freezing Tolerance by Degrading the Cold Signaling Negative Regulator MYB15. DOI: 10.1016/j.devcel.2019.08.008 ; PMID: 31543444
- Plant U-box E3 ligases PUB25 and PUB26 control organ growth in Arabidopsis. DOI: 10.1111/nph.16885 ; PMID: 32810874
- News from the PUB: plant U-box type E3 ubiquitin ligases. DOI: 10.1093/jxb/erx411 ; PMID: 29237060
- Verticillium dahliae effector VDAL protects MYB6 from degradation by interacting with PUB25 and PUB26 E3 ligases to enhance Verticillium wilt resistance. DOI: 10.1093/plcell/koab221 ; PMID: 34469582
- An antisense intragenic lncRNA SEAIRa mediates transcriptional and epigenetic repression of SERRATE in Arabidopsis. DOI: 10.1073/pnas.2216062120 ; PMID: 36857348
- PUB25 and PUB26 dynamically modulate ICE1 stability via differential ubiquitination during cold stress in Arabidopsis. DOI: 10.1093/plcell/koad159 ; PMID: 37279565
- Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. DOI: 10.1094/MPMI-20-8-0900 ; PMID: 17722694
Gene Resources
- UniProt: A0A178VQ48
- EMBL: CACRSJ010000106, LR881468, LUHQ01000003
- AlphaFoldDB: A0A178VQ48
- EnsemblPlants: AT3G19380.1
- Gramene: AT3G19380.1
- KEGG: ath:AT3G19380
- Orthologous matrix: ICSHEAR
- ExpressionAtlas: AT3G19380
- InterPro: IPR003613, IPR011989, IPR013083
- PANTHER: PTHR22849, PTHR22849:SF116
- SUPFAM: SSF48371, SSF57850
- PROSITE: PS51698
- Gene3D: 1.25.10.10, 3.30.40.10
- SWISS-MODEL: A0A178VQ48
- Conserved Domain Database: cd16664
Homologs
- Cucumis melo MELO3C027221
- Glycine max GmPUB21
- Gossypium hirsutum Gohir.D07G101600, Gohir.A07G097101
- Lactuca sativa gene-LSAT_8X76040
- Malus domestica MdPUB23, MdPUB29
- Manihot esculenta MANES_11G131500
- Medicago truncatula Medtr4g063800
- Musa acuminata Ma10_g22720
- Oryza sativa OsPUB43, OsUPS;OsPUB41
- Sesamum indicum SIN_1024201
- Setaria italica SETIT_034883mg
- Setaria viridis SEVIR_9G456100v2
Sequences
cDNA Sequence
- >AT3G19380.1
AAAAATTATCATAAAGAGATGTATAATTGTATATCATTCATATAAATCTTAAGCTTCACTTCAAAGATGCGACTTTCTCCCACAAAACATATTTACGTATATATCATCTCATGATGTTCACTTGATTAAAAATTAACATCACGAATTTAACAGAATATATTATTAAATAATCCAGCAGGTAACAAAGTTATAAATGGCACACGTGTGGGCTCATACCCAGATAAGCTCTCGTTCCTCATACTCTTAACGCTCACAACAAACAATCTCACCTTTCTTCTTCTTCTTCTTCTCTCTGTTTCTCAAGTTTCTTAATGCCTAGGAATATAGAACCATTGGATCTTGGAATCCAAATACCATATCATTTCAGATGTCCAATATCACTCGAACTTATGCAAGACCCAGTCACCGTCTGCACCGGCCAAACCTACGACCGAGCCAGCATCGAGTCATGGGTCTCCATCGGTAACAACACGACATGTCCAGTCACACGAGCTCCTCTCTCCGACTTCACACTCATCCCTAACCACACTCTCCGTCGTCTCATCCAAGAATGGTGCGTCGCTAACCGCTCCAATGGAGTCGAACGTATCCCTACTCCTAAACAACCAGCTGATCCAACCTCTGTTCGTGCTCTTCTCAGTCAAGCCTCTGCTATAACAGGAACCCACGTCTCTGTTCGTTCACGCGCCGCCGCTCTCCGCCGTTTACGTGGTTTCGCTCGTGATTCTGATAAAAATCGCGTTTTGATCGCAGCTCATAACGCTACAGAGATTTTGATTAAGATTCTGTTCTCTGAAACGACGTCGTCGGAGTTAGTCTCTGAGTCTTTAGCTCTACTTGTTATGTTACCGATAACGGAGCCGAACCAGTTTGTTTCGATATCGTCGGATCCGGGTCGGGTCGAGTTTTTGACCCGGTTGTTATTCGATTCGTCGATTGAAACACGCGTTAACGCCGCCGCGTTGATCGAGATTGTTTCGACGGGAACCAAATCGGCGGACCTGAAAGGTTCGATTTCGAATTCAGAATCTGTATTCGAAGGAGTTCTCGATCTTCTGAGAAATCCGATTTCGTCACGACGAGCTCTCAAAATCGGAATCAAAACTCTGTTCGCGCTCTGTTCAGTGAAATCGACGCGACACATCGCGATCACAGCCGGTGCGCCGGAGATTCTAATAGACAGACTCGCGGCGGATTTCGATAGATGCGATACGGAGCGAGCCTTAGCGACGGTGGAGCTACTCTGCCGAACGCCGGAAGGATGCGCGGCGTTCGGTGAGCACGCTTTAACGGTGCCGTTGTTAGTTAAAACGATATTGAGAGTTTCGGATCGCGCGACGGAGTATGCGGCGGGGGCGTTGTTAGCGCTTTGTACGGCGGAGGAAAGGTGGAGGGAGGAAGCGGCGGGGGCGGGAGTGGTGGTACAGTTGTTGTTGATGGTGCAGAGTGAGTGTACGGAGAGAGCGAAGAAGAAAGCACAGAAGTTATTGAAGCTTCTGAGAGATTCATGGCCTGACTACAATTCCTTCGCTAACTCCGATGACTTTGGTTGCAGCAGCCAAGTGGTCCCTTTTTGATTTCTCGATTTTTTTTTTTCAAAACATTGTTTTTTCACAGTAATTATTAAAAAAATGTTTTTTTTTTAATTAGAAGGAAAAATAATGGTCATTTTTTGTGTGTATTTGATGGAAAGATGTGAAGAAGAAAAGATAATATACAGAAGCTTTTTGATGACCATGAATTAGTTTTTTTTTTTTTCAGTATGTATGTAAAGTAATTATTTTGTTATTTGATTGGCCTTTTGAGTTGGGAAAAGTTGTTAAAGAAGCAAATGGAAGATATGCTTAAAGGCTTTTTAAAGTTTAAAGTCTAAAGGTAAGTCAACTTTTTTCTGCATTTTTACAGGTAAATTTTGGTATCGACATGTTGGCAAATTTGGTATCGACATGTAAGCTTCTAGTGAACGTCATTATGGTAGTTTGTACTTTGTGTTGTAGAGCTCTTGTTAATTTATCTTCTTTTAAGTGTCTCCTTTTTCTATTTTTT
CDS Sequence
- >AT3G19380.1
ATGCCTAGGAATATAGAACCATTGGATCTTGGAATCCAAATACCATATCATTTCAGATGTCCAATATCACTCGAACTTATGCAAGACCCAGTCACCGTCTGCACCGGCCAAACCTACGACCGAGCCAGCATCGAGTCATGGGTCTCCATCGGTAACAACACGACATGTCCAGTCACACGAGCTCCTCTCTCCGACTTCACACTCATCCCTAACCACACTCTCCGTCGTCTCATCCAAGAATGGTGCGTCGCTAACCGCTCCAATGGAGTCGAACGTATCCCTACTCCTAAACAACCAGCTGATCCAACCTCTGTTCGTGCTCTTCTCAGTCAAGCCTCTGCTATAACAGGAACCCACGTCTCTGTTCGTTCACGCGCCGCCGCTCTCCGCCGTTTACGTGGTTTCGCTCGTGATTCTGATAAAAATCGCGTTTTGATCGCAGCTCATAACGCTACAGAGATTTTGATTAAGATTCTGTTCTCTGAAACGACGTCGTCGGAGTTAGTCTCTGAGTCTTTAGCTCTACTTGTTATGTTACCGATAACGGAGCCGAACCAGTTTGTTTCGATATCGTCGGATCCGGGTCGGGTCGAGTTTTTGACCCGGTTGTTATTCGATTCGTCGATTGAAACACGCGTTAACGCCGCCGCGTTGATCGAGATTGTTTCGACGGGAACCAAATCGGCGGACCTGAAAGGTTCGATTTCGAATTCAGAATCTGTATTCGAAGGAGTTCTCGATCTTCTGAGAAATCCGATTTCGTCACGACGAGCTCTCAAAATCGGAATCAAAACTCTGTTCGCGCTCTGTTCAGTGAAATCGACGCGACACATCGCGATCACAGCCGGTGCGCCGGAGATTCTAATAGACAGACTCGCGGCGGATTTCGATAGATGCGATACGGAGCGAGCCTTAGCGACGGTGGAGCTACTCTGCCGAACGCCGGAAGGATGCGCGGCGTTCGGTGAGCACGCTTTAACGGTGCCGTTGTTAGTTAAAACGATATTGAGAGTTTCGGATCGCGCGACGGAGTATGCGGCGGGGGCGTTGTTAGCGCTTTGTACGGCGGAGGAAAGGTGGAGGGAGGAAGCGGCGGGGGCGGGAGTGGTGGTACAGTTGTTGTTGATGGTGCAGAGTGAGTGTACGGAGAGAGCGAAGAAGAAAGCACAGAAGTTATTGAAGCTTCTGAGAGATTCATGGCCTGACTACAATTCCTTCGCTAACTCCGATGACTTTGGTTGCAGCAGCCAAGTGGTCCCTTTTTGA
Protein Sequence
- >AT3G19380.1
MPRNIEPLDLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSESLALLVMLPITEPNQFVSISSDPGRVEFLTRLLFDSSIETRVNAAALIEIVSTGTKSADLKGSISNSESVFEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWREEAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPDYNSFANSDDFGCSSQVVPF